[824] | 1 | // |
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| 2 | // C++ Interface: Scantable |
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| 3 | // |
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| 4 | // Description: |
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| 5 | // |
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| 6 | // |
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| 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2005 |
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| 8 | // |
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| 9 | // Copyright: See COPYING file that comes with this distribution |
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| 10 | // |
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| 11 | // |
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| 12 | #ifndef ASAPSCANTABLE_H |
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| 13 | #define ASAPSCANTABLE_H |
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[2] | 14 | |
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| 15 | // STL |
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[2186] | 16 | #include <fstream> |
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| 17 | #include <iostream> |
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| 18 | #include <sstream> |
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[2] | 19 | #include <string> |
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| 20 | #include <vector> |
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| 21 | // AIPS++ |
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[455] | 22 | #include <casa/aips.h> |
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[322] | 23 | #include <casa/Arrays/MaskedArray.h> |
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[2186] | 24 | #include <casa/Arrays/Vector.h> |
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[80] | 25 | #include <casa/BasicSL/String.h> |
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[2186] | 26 | #include <casa/Containers/Record.h> |
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| 27 | #include <casa/Exceptions/Error.h> |
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| 28 | #include <casa/Quanta/Quantum.h> |
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[824] | 29 | #include <casa/Utilities/CountedPtr.h> |
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[2186] | 30 | #include <coordinates/Coordinates/SpectralCoordinate.h> |
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[824] | 31 | #include <measures/TableMeasures/ScalarMeasColumn.h> |
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[2186] | 32 | #include <scimath/Mathematics/FFTServer.h> |
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| 33 | #include <tables/Tables/ArrayColumn.h> |
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| 34 | #include <tables/Tables/ScalarColumn.h> |
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| 35 | #include <tables/Tables/Table.h> |
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[1819] | 36 | |
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[2186] | 37 | #include "MathUtils.h" |
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[2767] | 38 | #include "STBaselineEnum.h" |
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[2186] | 39 | #include "STFit.h" |
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| 40 | #include "STFitEntry.h" |
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| 41 | #include "STFocus.h" |
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| 42 | #include "STFrequencies.h" |
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[901] | 43 | #include "STHeader.h" |
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[2186] | 44 | #include "STHistory.h" |
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[824] | 45 | #include "STMolecules.h" |
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[2186] | 46 | #include "STPol.h" |
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[824] | 47 | #include "STSelector.h" |
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[2186] | 48 | #include "STTcal.h" |
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| 49 | #include "STWeather.h" |
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[2] | 50 | |
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[824] | 51 | namespace asap { |
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[2] | 52 | |
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[2666] | 53 | class Fitter; |
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[2773] | 54 | class STLineFinder; |
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| 55 | class STBaselineTable; |
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[2666] | 56 | |
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[824] | 57 | /** |
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| 58 | * This class contains and wraps a casa::Table, which is used to store |
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| 59 | * all the information. This can be either a MemoryTable or a |
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| 60 | * disk based Table. |
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| 61 | * It provides access functions to the underlying table |
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| 62 | * It contains n subtables: |
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| 63 | * @li weather |
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| 64 | * @li frequencies |
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| 65 | * @li molecules |
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| 66 | * @li tcal |
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| 67 | * @li focus |
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| 68 | * @li fits |
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| 69 | * |
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| 70 | * @brief The main ASAP data container |
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| 71 | * @author Malte Marquarding |
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| 72 | * @date |
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| 73 | * @version |
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| 74 | */ |
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[2658] | 75 | class Scantable |
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[824] | 76 | { |
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[902] | 77 | |
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| 78 | friend class STMath; |
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| 79 | |
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[2] | 80 | public: |
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[824] | 81 | /** |
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| 82 | * Default constructor |
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| 83 | */ |
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[1350] | 84 | explicit Scantable(casa::Table::TableType ttype = casa::Table::Memory); |
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[19] | 85 | |
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[824] | 86 | /** |
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[2321] | 87 | * Create a Scantable object from an existing table on disk |
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[824] | 88 | * @param[in] name the name of the existing Scantable |
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| 89 | */ |
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[2321] | 90 | explicit Scantable(const std::string& name, |
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| 91 | casa::Table::TableType ttype = casa::Table::Memory); |
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[2] | 92 | |
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[824] | 93 | /// @fixme this is only sensible for MemoryTables.... |
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| 94 | Scantable(const Scantable& other, bool clear=true); |
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[161] | 95 | |
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[824] | 96 | /** |
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| 97 | * Destructor |
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| 98 | */ |
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| 99 | virtual ~Scantable(); |
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[745] | 100 | |
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[824] | 101 | /** |
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| 102 | * get a const reference to the underlying casa::Table |
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[1104] | 103 | * @return const \ref casa::Table reference |
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[824] | 104 | */ |
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| 105 | const casa::Table& table() const; |
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[19] | 106 | |
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[824] | 107 | /** |
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| 108 | * get a reference to the underlying casa::Table with the Selection |
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| 109 | * object applied if set |
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| 110 | * @return casa::Table reference |
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| 111 | */ |
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| 112 | casa::Table& table(); |
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[21] | 113 | |
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[845] | 114 | |
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| 115 | /** |
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| 116 | * Get a handle to the selection object |
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| 117 | * @return constant STSelector reference |
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| 118 | */ |
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| 119 | const STSelector& getSelection() const { return selector_; } |
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| 120 | |
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| 121 | /** |
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| 122 | * Set the data to be a subset as defined by the STSelector |
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| 123 | * @param selection a STSelector object |
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| 124 | */ |
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[824] | 125 | void setSelection(const STSelector& selection); |
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[845] | 126 | |
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| 127 | /** |
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| 128 | * unset the selection of the data |
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| 129 | */ |
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[824] | 130 | void unsetSelection(); |
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| 131 | /** |
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| 132 | * set the header |
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[1295] | 133 | * @param[in] sth an STHeader object |
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[824] | 134 | */ |
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[901] | 135 | void setHeader( const STHeader& sth ); |
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[386] | 136 | |
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[824] | 137 | /** |
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| 138 | * get the header information |
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[901] | 139 | * @return an STHeader object |
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[824] | 140 | */ |
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[901] | 141 | STHeader getHeader( ) const; |
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[1068] | 142 | |
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[824] | 143 | /** |
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| 144 | * Checks if the "other" Scantable is conformant with this, |
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| 145 | * i.e. if header values are the same. |
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| 146 | * @param[in] other another Scantable |
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| 147 | * @return true or false |
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| 148 | */ |
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| 149 | bool conformant( const Scantable& other); |
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[430] | 150 | |
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[824] | 151 | /** |
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[1068] | 152 | * |
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| 153 | * @param stype The type of the source, 0 = on, 1 = off |
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| 154 | */ |
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| 155 | void setSourceType(int stype); |
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| 156 | |
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[2818] | 157 | /** |
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| 158 | * |
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| 159 | * @param stype The name of the source |
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| 160 | */ |
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| 161 | void setSourceName(const std::string& name); |
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[1068] | 162 | |
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[2818] | 163 | |
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[1068] | 164 | /** |
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[1104] | 165 | * The number of scans in the table |
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[824] | 166 | * @return number of scans in the table |
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| 167 | */ |
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[845] | 168 | int nscan() const; |
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[490] | 169 | |
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[915] | 170 | casa::MEpoch::Types getTimeReference() const; |
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[21] | 171 | |
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[1411] | 172 | |
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| 173 | casa::MEpoch getEpoch(int whichrow) const; |
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| 174 | |
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[824] | 175 | /** |
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| 176 | * Get global antenna position |
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[845] | 177 | * @return casa::MPosition |
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[824] | 178 | */ |
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| 179 | casa::MPosition getAntennaPosition() const; |
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[490] | 180 | |
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[1441] | 181 | /** |
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| 182 | * the @ref casa::MDirection for a specific row |
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| 183 | * @param[in] whichrow the row number |
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| 184 | * return casa::MDirection |
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| 185 | */ |
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[987] | 186 | casa::MDirection getDirection( int whichrow ) const; |
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[1598] | 187 | |
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[1441] | 188 | /** |
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| 189 | * get the direction type as a string, e.g. "J2000" |
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| 190 | * @param[in] whichrow the row number |
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| 191 | * return the direction string |
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| 192 | */ |
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[1068] | 193 | std::string getDirectionString( int whichrow ) const; |
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| 194 | |
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[1441] | 195 | /** |
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| 196 | * set the direction type as a string, e.g. "J2000" |
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| 197 | * @param[in] refstr the direction type |
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| 198 | */ |
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[987] | 199 | void setDirectionRefString(const std::string& refstr=""); |
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[1441] | 200 | |
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[1104] | 201 | /** |
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| 202 | * get the direction reference string |
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| 203 | * @return a string describing the direction reference |
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| 204 | */ |
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[1598] | 205 | std::string getDirectionRefString() const; |
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[987] | 206 | |
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[824] | 207 | /** |
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[845] | 208 | * Return the Flux unit of the data, e.g. "Jy" or "K" |
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| 209 | * @return string |
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[824] | 210 | */ |
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| 211 | std::string getFluxUnit() const; |
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[472] | 212 | |
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[824] | 213 | /** |
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[845] | 214 | * Set the Flux unit of the data |
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| 215 | * @param unit a string representing the unit, e.g "Jy" or "K" |
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[824] | 216 | */ |
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| 217 | void setFluxUnit( const std::string& unit ); |
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[472] | 218 | |
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[824] | 219 | /** |
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[1189] | 220 | * Set the Stokes type of the data |
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[1295] | 221 | * @param feedtype a string representing the type, e.g "circular" or "linear" |
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[1189] | 222 | */ |
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| 223 | void setFeedType( const std::string& feedtype ); |
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| 224 | |
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| 225 | /** |
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[824] | 226 | * |
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[845] | 227 | * @param instrument a string representing an insturment. see xxx |
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[824] | 228 | */ |
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| 229 | void setInstrument( const std::string& instrument ); |
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[2] | 230 | |
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[845] | 231 | /** |
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| 232 | * (Re)calculate the azimuth and elevationnfor all rows |
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| 233 | */ |
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[824] | 234 | void calculateAZEL(); |
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[745] | 235 | |
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[824] | 236 | /** |
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[845] | 237 | * "hard" flag the data, this flags everything selected in setSelection() |
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[1104] | 238 | * param[in] msk a boolean mask of length nchan describing the points to |
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| 239 | * to be flagged |
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[824] | 240 | */ |
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[1430] | 241 | //void flag( const std::vector<bool>& msk = std::vector<bool>()); |
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[1994] | 242 | //void flag( const std::vector<bool>& msk = std::vector<bool>(), bool unflag=false); |
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[455] | 243 | |
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[1994] | 244 | void flag( int whichrow = -1, const std::vector<bool>& msk = std::vector<bool>(), bool unflag=false); |
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| 245 | |
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[852] | 246 | /** |
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[1819] | 247 | * Flag the data in a row-based manner. (CAS-1433 Wataru Kawasaki) |
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| 248 | * param[in] rows list of row numbers to be flagged |
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| 249 | */ |
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| 250 | void flagRow( const std::vector<casa::uInt>& rows = std::vector<casa::uInt>(), bool unflag=false); |
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| 251 | |
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| 252 | /** |
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| 253 | * Get flagRow info at the specified row. If true, the whole data |
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| 254 | * at the row should be flagged. |
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| 255 | */ |
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| 256 | bool getFlagRow(int whichrow) const |
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| 257 | { return (flagrowCol_(whichrow) > 0); } |
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| 258 | |
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| 259 | /** |
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| 260 | * Flag the data outside a specified range (in a channel-based manner). |
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| 261 | * (CAS-1807 Wataru Kawasaki) |
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| 262 | */ |
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| 263 | void clip(const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag); |
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| 264 | |
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| 265 | /** |
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| 266 | * Return a list of booleans with the size of nchan for a specified row, to get info |
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| 267 | * about which channel is clipped. |
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| 268 | */ |
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| 269 | std::vector<bool> getClipMask(int whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag); |
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| 270 | void srchChannelsToClip(casa::uInt whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag, |
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| 271 | casa::Vector<casa::uChar> flgs); |
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| 272 | |
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| 273 | /** |
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[852] | 274 | * Return a list of row numbers with respect to the original table. |
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[902] | 275 | * @return a list of unsigned ints |
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[852] | 276 | */ |
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| 277 | std::vector<unsigned int> rownumbers() const; |
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[845] | 278 | |
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[852] | 279 | |
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[845] | 280 | /** |
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| 281 | * Get the number of beams in the data or a specific scan |
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| 282 | * @param scanno the scan number to get the number of beams for. |
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| 283 | * If scanno<0 the number is retrieved from the header. |
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| 284 | * @return an integer number |
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| 285 | */ |
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[824] | 286 | int nbeam(int scanno=-1) const; |
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[845] | 287 | /** |
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| 288 | * Get the number of IFs in the data or a specific scan |
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| 289 | * @param scanno the scan number to get the number of IFs for. |
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| 290 | * If scanno<0 the number is retrieved from the header. |
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| 291 | * @return an integer number |
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| 292 | */ |
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[824] | 293 | int nif(int scanno=-1) const; |
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[845] | 294 | /** |
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| 295 | * Get the number of polarizations in the data or a specific scan |
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| 296 | * @param scanno the scan number to get the number of polarizations for. |
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| 297 | * If scanno<0 the number is retrieved from the header. |
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| 298 | * @return an integer number |
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| 299 | */ |
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[824] | 300 | int npol(int scanno=-1) const; |
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[794] | 301 | |
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[896] | 302 | std::string getPolType() const; |
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| 303 | |
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[845] | 304 | |
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| 305 | /** |
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| 306 | * Get the number of integartion cycles |
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| 307 | * @param scanno the scan number to get the number of rows for. |
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| 308 | * If scanno<0 the number is retrieved from the header. |
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[1104] | 309 | * @return the number of rows (for the specified scanno) |
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[845] | 310 | */ |
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[824] | 311 | int nrow(int scanno=-1) const; |
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[794] | 312 | |
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[1111] | 313 | int getBeam(int whichrow) const; |
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[1694] | 314 | std::vector<uint> getBeamNos() const { return getNumbers(beamCol_); } |
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[50] | 315 | |
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[847] | 316 | int getIF(int whichrow) const; |
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[1694] | 317 | std::vector<uint> getIFNos() const { return getNumbers(ifCol_); } |
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[1111] | 318 | |
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[847] | 319 | int getPol(int whichrow) const; |
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[1694] | 320 | std::vector<uint> getPolNos() const { return getNumbers(polCol_); } |
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[1111] | 321 | |
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[1694] | 322 | std::vector<uint> getScanNos() const { return getNumbers(scanCol_); } |
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[865] | 323 | int getScan(int whichrow) const { return scanCol_(whichrow); } |
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[1111] | 324 | |
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[2667] | 325 | std::vector<uint> getCycleNos() const { return getNumbers(cycleCol_); } |
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| 326 | int getCycle(int whichrow) const { return cycleCol_(whichrow); } |
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| 327 | |
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[1819] | 328 | //TT addition |
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| 329 | std::vector<uint> getMolNos() {return getNumbers(mmolidCol_); } |
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| 330 | |
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[1111] | 331 | /** |
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| 332 | * Get the number of channels in the data or a specific IF. This currently |
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| 333 | * varies only with IF number |
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| 334 | * @param ifno the IF number to get the number of channels for. |
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| 335 | * If ifno<0 the number is retrieved from the header. |
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| 336 | * @return an integer number |
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| 337 | */ |
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| 338 | int nchan(int ifno=-1) const; |
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[923] | 339 | int getChannels(int whichrow) const; |
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[206] | 340 | |
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[1111] | 341 | int ncycle(int scanno=-1) const; |
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| 342 | |
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[2667] | 343 | |
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[847] | 344 | double getInterval(int whichrow) const |
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| 345 | { return integrCol_(whichrow); } |
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[845] | 346 | |
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[865] | 347 | float getTsys(int whichrow) const |
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| 348 | { return casa::Vector<casa::Float>(tsysCol_(whichrow))(0); } |
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[2161] | 349 | std::vector<float> getTsysSpectrum(int whichrow) const ; |
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[2791] | 350 | |
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| 351 | void setTsys(const std::vector<float>& newvals, int whichrow); |
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| 352 | |
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[847] | 353 | float getElevation(int whichrow) const |
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| 354 | { return elCol_(whichrow); } |
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| 355 | float getAzimuth(int whichrow) const |
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| 356 | { return azCol_(whichrow); } |
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[865] | 357 | float getParAngle(int whichrow) const |
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[1819] | 358 | { return focus().getParAngle(mfocusidCol_(whichrow)); } |
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| 359 | int getTcalId(int whichrow) const |
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| 360 | { return mtcalidCol_(whichrow); } |
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[386] | 361 | |
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[865] | 362 | std::string getSourceName(int whichrow) const |
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| 363 | { return srcnCol_(whichrow); } |
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| 364 | |
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[847] | 365 | std::vector<bool> getMask(int whichrow) const; |
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[896] | 366 | std::vector<float> getSpectrum(int whichrow, |
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[905] | 367 | const std::string& poltype = "" ) const; |
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[847] | 368 | |
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[884] | 369 | void setSpectrum(const std::vector<float>& spec, int whichrow); |
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| 370 | |
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[902] | 371 | std::string getPolarizationLabel(int index, const std::string& ptype) const |
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| 372 | { return STPol::getPolLabel(index, ptype ); } |
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[401] | 373 | |
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[845] | 374 | /** |
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| 375 | * Write the Scantable to disk |
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| 376 | * @param filename the output file name |
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| 377 | */ |
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[824] | 378 | void makePersistent(const std::string& filename); |
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[745] | 379 | |
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[2820] | 380 | std::vector<std::string> getHistory(int nrow=-1, int start=0) const |
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| 381 | { return historyTable_.getHistory(nrow, start); } |
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[483] | 382 | |
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[2820] | 383 | uint historyLength() |
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| 384 | { return historyTable_.nrow(); } |
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| 385 | |
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| 386 | void dropHistory() { historyTable_.drop(); } |
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| 387 | |
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[860] | 388 | void addHistory(const std::string& hist) { historyTable_.addEntry(hist); } |
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[488] | 389 | |
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[860] | 390 | void appendToHistoryTable(const STHistory& otherhist) |
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| 391 | { historyTable_.append(otherhist); } |
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| 392 | |
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[2163] | 393 | std::string headerSummary(); |
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[2290] | 394 | void summary(const std::string& filename=""); |
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| 395 | std::string oldheaderSummary(); |
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[2286] | 396 | // std::string summary(); |
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[2290] | 397 | void oldsummary(const std::string& filename=""); |
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| 398 | |
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[1947] | 399 | //std::string getTime(int whichrow=-1, bool showdate=true) const; |
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[2818] | 400 | std::string getTime(int whichrow=-1, bool showdate=true, |
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| 401 | casa::uInt prec=0) const; |
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[1350] | 402 | double getIntTime(int whichrow) const { return integrCol_(whichrow); } |
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[19] | 403 | |
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[847] | 404 | // returns unit, conversion frame, doppler, base-frame |
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[18] | 405 | |
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[847] | 406 | /** |
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| 407 | * Get the frequency set up |
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| 408 | * This is forwarded to the STFrequencies subtable |
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| 409 | * @return unit, frame, doppler |
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| 410 | */ |
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| 411 | std::vector<std::string> getCoordInfo() const |
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| 412 | { return freqTable_.getInfo(); }; |
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| 413 | |
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| 414 | void setCoordInfo(std::vector<string> theinfo) |
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| 415 | { return freqTable_.setInfo(theinfo); }; |
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| 416 | |
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[865] | 417 | |
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| 418 | std::vector<double> getAbcissa(int whichrow) const; |
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| 419 | |
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[1730] | 420 | std::vector<float> getWeather(int whichrow) const; |
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| 421 | |
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[847] | 422 | std::string getAbcissaLabel(int whichrow) const; |
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| 423 | std::vector<double> getRestFrequencies() const |
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| 424 | { return moleculeTable_.getRestFrequencies(); } |
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[1819] | 425 | std::vector<double> getRestFrequency(int id) const |
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| 426 | { return moleculeTable_.getRestFrequency(id); } |
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[847] | 427 | |
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[1819] | 428 | /** |
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[1170] | 429 | void setRestFrequencies(double rf, const std::string& name = "", |
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| 430 | const std::string& = "Hz"); |
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[1819] | 431 | **/ |
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| 432 | // Modified by Takeshi Nakazato 05/09/2008 |
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| 433 | /*** |
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| 434 | void setRestFrequencies(vector<double> rf, const vector<std::string>& name = "", |
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| 435 | const std::string& = "Hz"); |
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| 436 | ***/ |
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| 437 | void setRestFrequencies(vector<double> rf, |
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| 438 | const vector<std::string>& name = vector<std::string>(1,""), |
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| 439 | const std::string& = "Hz"); |
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[847] | 440 | |
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[1819] | 441 | //void setRestFrequencies(const std::string& name); |
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| 442 | void setRestFrequencies(const vector<std::string>& name); |
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| 443 | |
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[1360] | 444 | void shift(int npix); |
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| 445 | |
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[1598] | 446 | casa::SpectralCoordinate getSpectralCoordinate(int whichrow) const; |
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| 447 | |
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[987] | 448 | void convertDirection(const std::string& newframe); |
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| 449 | |
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[824] | 450 | STFrequencies& frequencies() { return freqTable_; } |
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[1375] | 451 | const STFrequencies& frequencies() const { return freqTable_; } |
---|
[824] | 452 | STWeather& weather() { return weatherTable_; } |
---|
[1375] | 453 | const STWeather& weather() const { return weatherTable_; } |
---|
[824] | 454 | STFocus& focus() { return focusTable_; } |
---|
[1375] | 455 | const STFocus& focus() const { return focusTable_; } |
---|
[824] | 456 | STTcal& tcal() { return tcalTable_; } |
---|
[1375] | 457 | const STTcal& tcal() const { return tcalTable_; } |
---|
[824] | 458 | STMolecules& molecules() { return moleculeTable_; } |
---|
[1375] | 459 | const STMolecules& molecules() const { return moleculeTable_; } |
---|
[860] | 460 | STHistory& history() { return historyTable_; } |
---|
[1375] | 461 | const STHistory& history() const { return historyTable_; } |
---|
[972] | 462 | STFit& fit() { return fitTable_; } |
---|
[1375] | 463 | const STFit& fit() const { return fitTable_; } |
---|
[2] | 464 | |
---|
[902] | 465 | std::vector<std::string> columnNames() const; |
---|
[896] | 466 | |
---|
[972] | 467 | void addFit(const STFitEntry& fit, int row); |
---|
| 468 | STFitEntry getFit(int row) const |
---|
| 469 | { STFitEntry fe; fitTable_.getEntry(fe, mfitidCol_(row)); return fe; } |
---|
| 470 | |
---|
[1391] | 471 | //Added by TT |
---|
| 472 | /** |
---|
| 473 | * Get the antenna name |
---|
| 474 | * @return antenna name string |
---|
| 475 | */ |
---|
[1819] | 476 | casa::String getAntennaName() const; |
---|
[1391] | 477 | |
---|
| 478 | /** |
---|
| 479 | * For GBT MS data only. check a scan list |
---|
| 480 | * against the information found in GBT_GO table for |
---|
| 481 | * scan number orders to get correct pairs. |
---|
| 482 | * @param[in] scan list |
---|
| 483 | * @return status |
---|
| 484 | */ |
---|
| 485 | int checkScanInfo(const std::vector<int>& scanlist) const; |
---|
| 486 | |
---|
| 487 | /** |
---|
| 488 | * Get the direction as a vector, for a specific row |
---|
| 489 | * @param[in] whichrow the row numbyyer |
---|
| 490 | * @return the direction in a vector |
---|
| 491 | */ |
---|
| 492 | std::vector<double> getDirectionVector(int whichrow) const; |
---|
| 493 | |
---|
[1586] | 494 | /** |
---|
| 495 | * Set a flag indicating whether the data was parallactified |
---|
| 496 | * @param[in] flag true or false |
---|
| 497 | */ |
---|
[1598] | 498 | void parallactify(bool flag) |
---|
[2357] | 499 | { focusTable_.setParallactify(flag); } |
---|
[1727] | 500 | |
---|
[1819] | 501 | /** |
---|
| 502 | * Reshape spectrum |
---|
| 503 | * @param[in] nmin, nmax minimum and maximum channel |
---|
| 504 | * @param[in] irow row number |
---|
| 505 | * |
---|
| 506 | * 30/07/2008 Takeshi Nakazato |
---|
| 507 | **/ |
---|
| 508 | void reshapeSpectrum( int nmin, int nmax ) throw( casa::AipsError ); |
---|
| 509 | void reshapeSpectrum( int nmin, int nmax, int irow ) ; |
---|
| 510 | |
---|
| 511 | /** |
---|
| 512 | * Change channel number under fixed bandwidth |
---|
| 513 | * @param[in] nchan, dnu new channel number and spectral resolution |
---|
| 514 | * @param[in] irow row number |
---|
| 515 | * |
---|
| 516 | * 27/08/2008 Takeshi Nakazato |
---|
| 517 | **/ |
---|
| 518 | void regridChannel( int nchan, double dnu ) ; |
---|
| 519 | void regridChannel( int nchan, double dnu, int irow ) ; |
---|
[2595] | 520 | void regridChannel( int nchan, double dnu, double fmin, int irow ) ; |
---|
[2435] | 521 | void regridSpecChannel( double dnu, int nchan=-1 ) ; |
---|
| 522 | |
---|
[2047] | 523 | bool getFlagtraFast(casa::uInt whichrow); |
---|
[1819] | 524 | |
---|
[2811] | 525 | std::vector<std::string> applyBaselineTable(const std::string& bltable, |
---|
| 526 | const bool returnfitresult, |
---|
| 527 | const std::string& outbltable, |
---|
| 528 | const bool outbltableexists, |
---|
| 529 | const bool overwrite); |
---|
| 530 | std::vector<std::string> subBaseline(const std::vector<std::string>& blInfoList, |
---|
| 531 | const bool returnfitresult, |
---|
| 532 | const std::string& outbltable, |
---|
| 533 | const bool outbltableexists, |
---|
| 534 | const bool overwrite); |
---|
[2767] | 535 | void polyBaseline(const std::vector<bool>& mask, |
---|
| 536 | int order, |
---|
| 537 | float thresClip, |
---|
| 538 | int nIterClip, |
---|
[2094] | 539 | bool getResidual=true, |
---|
[2189] | 540 | const std::string& progressInfo="true,1000", |
---|
[2767] | 541 | const bool outLogger=false, |
---|
| 542 | const std::string& blfile="", |
---|
| 543 | const std::string& bltable=""); |
---|
[2012] | 544 | void autoPolyBaseline(const std::vector<bool>& mask, |
---|
[2767] | 545 | int order, |
---|
| 546 | float thresClip, |
---|
| 547 | int nIterClip, |
---|
| 548 | const std::vector<int>& edge, |
---|
| 549 | float threshold=3.0, |
---|
| 550 | int chanAvgLimit=1, |
---|
| 551 | bool getResidual=true, |
---|
| 552 | const std::string& progressInfo="true,1000", |
---|
| 553 | const bool outLogger=false, |
---|
| 554 | const std::string& blfile="", |
---|
| 555 | const std::string& bltable=""); |
---|
[2645] | 556 | void chebyshevBaseline(const std::vector<bool>& mask, |
---|
| 557 | int order, |
---|
| 558 | float thresClip, |
---|
| 559 | int nIterClip, |
---|
| 560 | bool getResidual=true, |
---|
| 561 | const std::string& progressInfo="true,1000", |
---|
| 562 | const bool outLogger=false, |
---|
[2767] | 563 | const std::string& blfile="", |
---|
| 564 | const std::string& bltable=""); |
---|
[2645] | 565 | void autoChebyshevBaseline(const std::vector<bool>& mask, |
---|
| 566 | int order, |
---|
| 567 | float thresClip, |
---|
| 568 | int nIterClip, |
---|
| 569 | const std::vector<int>& edge, |
---|
| 570 | float threshold=3.0, |
---|
| 571 | int chanAvgLimit=1, |
---|
| 572 | bool getResidual=true, |
---|
| 573 | const std::string& progressInfo="true,1000", |
---|
| 574 | const bool outLogger=false, |
---|
[2767] | 575 | const std::string& blfile="", |
---|
| 576 | const std::string& bltable=""); |
---|
[2012] | 577 | void cubicSplineBaseline(const std::vector<bool>& mask, |
---|
| 578 | int nPiece, |
---|
| 579 | float thresClip, |
---|
| 580 | int nIterClip, |
---|
[2094] | 581 | bool getResidual=true, |
---|
[2189] | 582 | const std::string& progressInfo="true,1000", |
---|
| 583 | const bool outLogger=false, |
---|
[2767] | 584 | const std::string& blfile="", |
---|
| 585 | const std::string& bltable=""); |
---|
[2012] | 586 | void autoCubicSplineBaseline(const std::vector<bool>& mask, |
---|
| 587 | int nPiece, |
---|
| 588 | float thresClip, |
---|
| 589 | int nIterClip, |
---|
| 590 | const std::vector<int>& edge, |
---|
| 591 | float threshold=3.0, |
---|
| 592 | int chanAvgLimit=1, |
---|
[2094] | 593 | bool getResidual=true, |
---|
[2189] | 594 | const std::string& progressInfo="true,1000", |
---|
| 595 | const bool outLogger=false, |
---|
[2767] | 596 | const std::string& blfile="", |
---|
| 597 | const std::string& bltable=""); |
---|
[2047] | 598 | void sinusoidBaseline(const std::vector<bool>& mask, |
---|
[2767] | 599 | const std::string& fftInfo, |
---|
[2186] | 600 | const std::vector<int>& addNWaves, |
---|
| 601 | const std::vector<int>& rejectNWaves, |
---|
[2047] | 602 | float thresClip, |
---|
| 603 | int nIterClip, |
---|
[2081] | 604 | bool getResidual=true, |
---|
[2189] | 605 | const std::string& progressInfo="true,1000", |
---|
| 606 | const bool outLogger=false, |
---|
[2767] | 607 | const std::string& blfile="", |
---|
| 608 | const std::string& bltable=""); |
---|
[2047] | 609 | void autoSinusoidBaseline(const std::vector<bool>& mask, |
---|
[2767] | 610 | const std::string& fftInfo, |
---|
[2186] | 611 | const std::vector<int>& addNWaves, |
---|
| 612 | const std::vector<int>& rejectNWaves, |
---|
[2047] | 613 | float thresClip, |
---|
| 614 | int nIterClip, |
---|
| 615 | const std::vector<int>& edge, |
---|
| 616 | float threshold=3.0, |
---|
| 617 | int chanAvgLimit=1, |
---|
[2081] | 618 | bool getResidual=true, |
---|
[2189] | 619 | const std::string& progressInfo="true,1000", |
---|
| 620 | const bool outLogger=false, |
---|
[2767] | 621 | const std::string& blfile="", |
---|
| 622 | const std::string& bltable=""); |
---|
[2186] | 623 | std::vector<float> execFFT(const int whichrow, |
---|
| 624 | const std::vector<bool>& inMask, |
---|
| 625 | bool getRealImag=false, |
---|
| 626 | bool getAmplitudeOnly=false); |
---|
[2012] | 627 | float getRms(const std::vector<bool>& mask, int whichrow); |
---|
| 628 | std::string formatBaselineParams(const std::vector<float>& params, |
---|
| 629 | const std::vector<bool>& fixed, |
---|
| 630 | float rms, |
---|
[2193] | 631 | int nClipped, |
---|
[2012] | 632 | const std::string& masklist, |
---|
| 633 | int whichrow, |
---|
[2064] | 634 | bool verbose=false, |
---|
[2641] | 635 | bool csvformat=false, |
---|
[2064] | 636 | int start=-1, |
---|
| 637 | int count=-1, |
---|
| 638 | bool resetparamid=false) const; |
---|
[2012] | 639 | std::string formatPiecewiseBaselineParams(const std::vector<int>& ranges, |
---|
| 640 | const std::vector<float>& params, |
---|
| 641 | const std::vector<bool>& fixed, |
---|
| 642 | float rms, |
---|
[2193] | 643 | int nClipped, |
---|
[2012] | 644 | const std::string& masklist, |
---|
| 645 | int whichrow, |
---|
[2641] | 646 | bool verbose=false, |
---|
| 647 | bool csvformat=false) const; |
---|
[2591] | 648 | std::vector<uint> getMoleculeIdColumnData() const; |
---|
| 649 | void setMoleculeIdColumnData(const std::vector<uint>& molids); |
---|
[2713] | 650 | double calculateModelSelectionCriteria(const std::string& valname, |
---|
| 651 | const std::string& blfunc, |
---|
| 652 | int order, |
---|
| 653 | const std::vector<bool>& inMask, |
---|
| 654 | int whichrow, |
---|
| 655 | bool useLineFinder, |
---|
| 656 | const std::vector<int>& edge, |
---|
| 657 | float threshold, |
---|
| 658 | int chanAvgLimit); |
---|
[2767] | 659 | static std::vector<bool> getMaskFromMaskList(const int nchan, |
---|
[2789] | 660 | const std::vector<int>& masklist); |
---|
| 661 | static casa::Vector<casa::uInt> getMaskListFromMask( |
---|
| 662 | const std::vector<bool>& mask); |
---|
| 663 | static std::vector<int> splitToIntList(const std::string& str, |
---|
| 664 | const char delim); |
---|
| 665 | static std::vector<string> splitToStringList(const std::string& str, |
---|
| 666 | const char delim); |
---|
[1907] | 667 | |
---|
[2789] | 668 | void dropXPol(); |
---|
[2012] | 669 | |
---|
[824] | 670 | private: |
---|
[896] | 671 | |
---|
| 672 | casa::Matrix<casa::Float> getPolMatrix( casa::uInt whichrow ) const; |
---|
| 673 | |
---|
[824] | 674 | /** |
---|
[2005] | 675 | * Turns a time value into a formatted string |
---|
[824] | 676 | * @param x |
---|
| 677 | * @return |
---|
| 678 | */ |
---|
| 679 | std::string formatSec(casa::Double x) const; |
---|
[18] | 680 | |
---|
[824] | 681 | std::string formatTime(const casa::MEpoch& me, bool showdate)const; |
---|
[2818] | 682 | std::string formatTime(const casa::MEpoch& me, bool showdate, |
---|
| 683 | casa::uInt prec)const; |
---|
[22] | 684 | |
---|
[824] | 685 | /** |
---|
| 686 | * Turns a casa::MDirection into a nicely formatted string |
---|
| 687 | * @param md an casa::MDirection |
---|
| 688 | * @return |
---|
| 689 | */ |
---|
| 690 | std::string formatDirection(const casa::MDirection& md) const; |
---|
[19] | 691 | |
---|
[824] | 692 | /** |
---|
| 693 | * Create a unique file name for the paged (temporary) table |
---|
| 694 | * @return just the name |
---|
| 695 | */ |
---|
| 696 | static casa::String generateName(); |
---|
[286] | 697 | |
---|
[824] | 698 | /** |
---|
| 699 | * attach to cached columns |
---|
| 700 | */ |
---|
| 701 | void attach(); |
---|
[50] | 702 | |
---|
[824] | 703 | /** |
---|
| 704 | * Set up the main casa::Table |
---|
| 705 | */ |
---|
| 706 | void setupMainTable(); |
---|
[88] | 707 | |
---|
[859] | 708 | void attachSubtables(); |
---|
[865] | 709 | void copySubtables(const Scantable& other); |
---|
| 710 | |
---|
[824] | 711 | /** |
---|
| 712 | * Convert an "old" asap1 style row index into a new index |
---|
| 713 | * @param[in] therow |
---|
| 714 | * @return and index into @table_ |
---|
| 715 | */ |
---|
| 716 | int rowToScanIndex(int therow); |
---|
[212] | 717 | |
---|
[1694] | 718 | std::vector<uint> getNumbers(const casa::ScalarColumn<casa::uInt>& col) const; |
---|
[1111] | 719 | |
---|
[2321] | 720 | static const casa::uInt version_ = 4; |
---|
[286] | 721 | |
---|
[824] | 722 | STSelector selector_; |
---|
[236] | 723 | |
---|
[824] | 724 | casa::Table::TableType type_; |
---|
[465] | 725 | |
---|
[824] | 726 | // the actual data |
---|
| 727 | casa::Table table_; |
---|
| 728 | casa::Table originalTable_; |
---|
[745] | 729 | |
---|
[824] | 730 | STTcal tcalTable_; |
---|
| 731 | STFrequencies freqTable_; |
---|
| 732 | STWeather weatherTable_; |
---|
| 733 | STFocus focusTable_; |
---|
| 734 | STMolecules moleculeTable_; |
---|
[860] | 735 | STHistory historyTable_; |
---|
[960] | 736 | STFit fitTable_; |
---|
[860] | 737 | |
---|
[824] | 738 | // Cached Columns to avoid reconstructing them for each row get/put |
---|
[847] | 739 | casa::ScalarColumn<casa::Double> integrCol_; |
---|
[824] | 740 | casa::MDirection::ScalarColumn dirCol_; |
---|
[847] | 741 | casa::MEpoch::ScalarColumn timeCol_; |
---|
[923] | 742 | casa::ScalarColumn<casa::Float> azCol_; |
---|
| 743 | casa::ScalarColumn<casa::Float> elCol_; |
---|
[824] | 744 | casa::ScalarColumn<casa::String> srcnCol_, fldnCol_; |
---|
[1819] | 745 | casa::ScalarColumn<casa::uInt> scanCol_, beamCol_, ifCol_, polCol_, cycleCol_, flagrowCol_; |
---|
[1068] | 746 | casa::ScalarColumn<casa::Int> rbeamCol_, srctCol_; |
---|
[865] | 747 | casa::ArrayColumn<casa::Float> specCol_, tsysCol_; |
---|
[824] | 748 | casa::ArrayColumn<casa::uChar> flagsCol_; |
---|
[430] | 749 | |
---|
[824] | 750 | // id in frequencies table |
---|
| 751 | casa::ScalarColumn<casa::uInt> mfreqidCol_; |
---|
| 752 | // id in tcal table |
---|
| 753 | casa::ScalarColumn<casa::uInt> mtcalidCol_; |
---|
[430] | 754 | |
---|
[824] | 755 | casa::ArrayColumn<casa::String> histitemCol_; |
---|
[972] | 756 | casa::ScalarColumn<casa::Int> mfitidCol_; |
---|
[824] | 757 | casa::ScalarColumn<casa::uInt> mweatheridCol_; |
---|
[322] | 758 | |
---|
[824] | 759 | casa::ScalarColumn<casa::uInt> mfocusidCol_; |
---|
| 760 | |
---|
| 761 | casa::ScalarColumn<casa::uInt> mmolidCol_; |
---|
| 762 | |
---|
[896] | 763 | static std::map<std::string, STPol::STPolFactory *> factories_; |
---|
| 764 | void initFactories(); |
---|
| 765 | |
---|
[1819] | 766 | /** |
---|
| 767 | * Add an auxiliary column to the main table and attach it to a |
---|
| 768 | * cached column. Use for adding new columns that the original asap2 |
---|
| 769 | * tables do not have. |
---|
| 770 | * @param[in] col reference to the cached column to be attached |
---|
| 771 | * @param[in] colName column name in asap table |
---|
| 772 | * @param[in] defValue default value to fill in the column |
---|
| 773 | * |
---|
| 774 | * 25/10/2009 Wataru Kawasaki |
---|
| 775 | */ |
---|
| 776 | template<class T, class T2> void attachAuxColumnDef(casa::ScalarColumn<T>&, |
---|
| 777 | const casa::String&, |
---|
| 778 | const T2&); |
---|
| 779 | template<class T, class T2> void attachAuxColumnDef(casa::ArrayColumn<T>&, |
---|
| 780 | const casa::String&, |
---|
| 781 | const casa::Array<T2>&); |
---|
[1907] | 782 | |
---|
[2767] | 783 | double getNormalPolynomial(int n, double x); |
---|
[2645] | 784 | double getChebyshevPolynomial(int n, double x); |
---|
[2773] | 785 | std::vector<std::vector<double> > getPolynomialModel(int order, |
---|
| 786 | int nchan, |
---|
| 787 | double (Scantable::*pfunc)(int, double)); |
---|
| 788 | std::vector<std::vector<std::vector<double> > > getPolynomialModelReservoir(int order, |
---|
| 789 | double (Scantable::*pfunc)(int, double), |
---|
| 790 | std::vector<int>& nChanNos); |
---|
[2767] | 791 | std::vector<float> doPolynomialFitting(const std::vector<float>& data, |
---|
| 792 | const std::vector<bool>& mask, |
---|
| 793 | int order, |
---|
| 794 | std::vector<float>& params, |
---|
| 795 | float& rms, |
---|
| 796 | std::vector<bool>& finalMask, |
---|
| 797 | float clipth, |
---|
| 798 | int clipn); |
---|
| 799 | std::vector<float> doPolynomialFitting(const std::vector<float>& data, |
---|
| 800 | const std::vector<bool>& mask, |
---|
| 801 | int order, |
---|
| 802 | std::vector<float>& params, |
---|
| 803 | float& rms, |
---|
| 804 | std::vector<bool>& finalMask, |
---|
| 805 | int& nClipped, |
---|
| 806 | float thresClip=3.0, |
---|
| 807 | int nIterClip=0, |
---|
| 808 | bool getResidual=true); |
---|
[2645] | 809 | std::vector<float> doChebyshevFitting(const std::vector<float>& data, |
---|
[2767] | 810 | const std::vector<bool>& mask, |
---|
| 811 | int order, |
---|
| 812 | std::vector<float>& params, |
---|
| 813 | float& rms, |
---|
| 814 | std::vector<bool>& finalMask, |
---|
| 815 | float clipth, |
---|
| 816 | int clipn); |
---|
| 817 | std::vector<float> doChebyshevFitting(const std::vector<float>& data, |
---|
| 818 | const std::vector<bool>& mask, |
---|
| 819 | int order, |
---|
| 820 | std::vector<float>& params, |
---|
| 821 | float& rms, |
---|
| 822 | std::vector<bool>& finalMask, |
---|
| 823 | int& nClipped, |
---|
| 824 | float thresClip=3.0, |
---|
| 825 | int nIterClip=0, |
---|
| 826 | bool getResidual=true); |
---|
| 827 | std::vector<float> doLeastSquareFitting(const std::vector<float>& data, |
---|
| 828 | const std::vector<bool>& mask, |
---|
[2773] | 829 | const std::vector<std::vector<double> >& model, |
---|
[2767] | 830 | std::vector<float>& params, |
---|
| 831 | float& rms, |
---|
| 832 | std::vector<bool>& finalMask, |
---|
| 833 | int& nClipped, |
---|
| 834 | float thresClip=3.0, |
---|
| 835 | int nIterClip=0, |
---|
| 836 | bool getResidual=true); |
---|
| 837 | std::vector<float> doCubicSplineFitting(const std::vector<float>& data, |
---|
[2645] | 838 | const std::vector<bool>& mask, |
---|
[2767] | 839 | std::vector<int>& idxEdge, |
---|
[2645] | 840 | std::vector<float>& params, |
---|
[2767] | 841 | float& rms, |
---|
[2737] | 842 | std::vector<bool>& finalMask, |
---|
[2767] | 843 | float clipth, |
---|
| 844 | int clipn); |
---|
| 845 | std::vector<float> doCubicSplineFitting(const std::vector<float>& data, |
---|
| 846 | const std::vector<bool>& mask, |
---|
| 847 | int nPiece, |
---|
| 848 | std::vector<int>& idxEdge, |
---|
| 849 | std::vector<float>& params, |
---|
[2737] | 850 | float& rms, |
---|
[2767] | 851 | std::vector<bool>& finalMask, |
---|
| 852 | float clipth, |
---|
| 853 | int clipn); |
---|
[2012] | 854 | std::vector<float> doCubicSplineFitting(const std::vector<float>& data, |
---|
| 855 | const std::vector<bool>& mask, |
---|
[2081] | 856 | int nPiece, |
---|
[2767] | 857 | bool useGivenPieceBoundary, |
---|
[2064] | 858 | std::vector<int>& idxEdge, |
---|
[2012] | 859 | std::vector<float>& params, |
---|
[2767] | 860 | float& rms, |
---|
| 861 | std::vector<bool>& finalMask, |
---|
[2193] | 862 | int& nClipped, |
---|
[2012] | 863 | float thresClip=3.0, |
---|
[2767] | 864 | int nIterClip=0, |
---|
[2094] | 865 | bool getResidual=true); |
---|
[2773] | 866 | std::vector<float> doCubicSplineLeastSquareFitting(const std::vector<float>& data, |
---|
| 867 | const std::vector<bool>& mask, |
---|
| 868 | const std::vector<std::vector<double> >& model, |
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| 869 | int nPiece, |
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| 870 | bool useGivenPieceBoundary, |
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| 871 | std::vector<int>& idxEdge, |
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| 872 | std::vector<float>& params, |
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| 873 | float& rms, |
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| 874 | std::vector<bool>& finalMask, |
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| 875 | int& nClipped, |
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| 876 | float thresClip=3.0, |
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| 877 | int nIterClip=0, |
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| 878 | bool getResidual=true); |
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[2047] | 879 | std::vector<float> doSinusoidFitting(const std::vector<float>& data, |
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| 880 | const std::vector<bool>& mask, |
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[2081] | 881 | const std::vector<int>& waveNumbers, |
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[2047] | 882 | std::vector<float>& params, |
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[2767] | 883 | float& rms, |
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| 884 | std::vector<bool>& finalMask, |
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| 885 | float clipth, |
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| 886 | int clipn); |
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| 887 | std::vector<float> doSinusoidFitting(const std::vector<float>& data, |
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| 888 | const std::vector<bool>& mask, |
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| 889 | const std::vector<int>& waveNumbers, |
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| 890 | std::vector<float>& params, |
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| 891 | float& rms, |
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| 892 | std::vector<bool>& finalMask, |
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[2193] | 893 | int& nClipped, |
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[2047] | 894 | float thresClip=3.0, |
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[2767] | 895 | int nIterClip=0, |
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[2094] | 896 | bool getResidual=true); |
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[2773] | 897 | std::vector<std::vector<double> > getSinusoidModel(const std::vector<int>& waveNumbers, int nchan); |
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| 898 | std::vector<std::vector<std::vector<double> > > getSinusoidModelReservoir(const std::vector<int>& waveNumbers, |
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| 899 | std::vector<int>& nChanNos); |
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| 900 | std::vector<int> selectWaveNumbers(const std::vector<int>& addNWaves, |
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| 901 | const std::vector<int>& rejectNWaves); |
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| 902 | std::vector<int> selectWaveNumbers(const int whichrow, |
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| 903 | const std::vector<bool>& chanMask, |
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| 904 | //const std::string& fftInfo, |
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| 905 | const bool applyFFT, |
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| 906 | const std::string& fftMethod, |
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| 907 | const std::string& fftThresh, |
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| 908 | const std::vector<int>& addNWaves, |
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| 909 | const std::vector<int>& rejectNWaves); |
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| 910 | int getIdxOfNchan(const int nChan, const std::vector<int>& nChanNos); |
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[2767] | 911 | void parseFFTInfo(const std::string& fftInfo, |
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| 912 | bool& applyFFT, |
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| 913 | std::string& fftMethod, |
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| 914 | std::string& fftThresh); |
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[2773] | 915 | void parseFFTThresholdInfo(const std::string& fftThresh, |
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| 916 | std::string& fftThAttr, |
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| 917 | float& fftThSigma, |
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| 918 | int& fftThTop); |
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[2186] | 919 | void doSelectWaveNumbers(const int whichrow, |
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| 920 | const std::vector<bool>& chanMask, |
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| 921 | const std::string& fftMethod, |
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| 922 | const float fftThSigma, |
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| 923 | const int fftThTop, |
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| 924 | const std::string& fftThAttr, |
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| 925 | std::vector<int>& nWaves); |
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[2411] | 926 | void addAuxWaveNumbers(const int whichrow, |
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| 927 | const std::vector<int>& addNWaves, |
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[2186] | 928 | const std::vector<int>& rejectNWaves, |
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| 929 | std::vector<int>& nWaves); |
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[2411] | 930 | void setWaveNumberListUptoNyquistFreq(const int whichrow, |
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| 931 | std::vector<int>& nWaves); |
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[2773] | 932 | void initialiseBaselining(const std::string& blfile, |
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| 933 | std::ofstream& ofs, |
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| 934 | const bool outLogger, |
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| 935 | bool& outTextFile, |
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| 936 | bool& csvFormat, |
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| 937 | casa::String& coordInfo, |
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| 938 | bool& hasSameNchan, |
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| 939 | const std::string& progressInfo, |
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| 940 | bool& showProgress, |
---|
| 941 | int& minNRow, |
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| 942 | casa::Vector<casa::Double>& timeSecCol); |
---|
| 943 | void finaliseBaselining(const bool outBaselineTable, |
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| 944 | STBaselineTable* pbt, |
---|
| 945 | const string& bltable, |
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| 946 | const bool outTextFile, |
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| 947 | std::ofstream& ofs); |
---|
| 948 | void initLineFinder(const std::vector<int>& edge, |
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| 949 | const float threshold, |
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| 950 | const int chanAvgLimit, |
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| 951 | STLineFinder& lineFinder); |
---|
[2012] | 952 | bool hasSameNchanOverIFs(); |
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| 953 | std::string getMaskRangeList(const std::vector<bool>& mask, |
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| 954 | int whichrow, |
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| 955 | const casa::String& coordInfo, |
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[2047] | 956 | bool hasSameNchan, |
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| 957 | bool verbose=false); |
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| 958 | std::vector<int> getMaskEdgeIndices(const std::vector<bool>& mask); |
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[2641] | 959 | std::string formatBaselineParamsHeader(int whichrow, const std::string& masklist, bool verbose, bool csvformat) const; |
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| 960 | std::string formatBaselineParamsFooter(float rms, int nClipped, bool verbose, bool csvformat) const; |
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[2012] | 961 | std::vector<bool> getCompositeChanMask(int whichrow, const std::vector<bool>& inMask); |
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[2773] | 962 | std::vector<bool> getCompositeChanMask(int whichrow, const std::vector<bool>& inMask, const std::vector<int>& edge, std::vector<int>& currEdge, STLineFinder& lineFinder); |
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[2641] | 963 | void outputFittingResult(bool outLogger, bool outTextFile, bool csvFormat, const std::vector<bool>& chanMask, int whichrow, const casa::String& coordInfo, bool hasSameNchan, std::ofstream& ofs, const casa::String& funcName, const std::vector<int>& edge, const std::vector<float>& params, const int nClipped); |
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| 964 | void outputFittingResult(bool outLogger, bool outTextFile, bool csvFormat, const std::vector<bool>& chanMask, int whichrow, const casa::String& coordInfo, bool hasSameNchan, std::ofstream& ofs, const casa::String& funcName, const std::vector<float>& params, const int nClipped); |
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[2189] | 965 | void parseProgressInfo(const std::string& progressInfo, bool& showProgress, int& minNRow); |
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| 966 | void showProgressOnTerminal(const int nProcessed, const int nTotal, const bool showProgress=true, const int nTotalThreshold=1000); |
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[1994] | 967 | |
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| 968 | void applyChanFlag( casa::uInt whichrow, const std::vector<bool>& msk, casa::uChar flagval); |
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| 969 | |
---|
[2713] | 970 | double doCalculateModelSelectionCriteria(const std::string& valname, |
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| 971 | const std::vector<float>& spec, |
---|
| 972 | const std::vector<bool>& mask, |
---|
| 973 | const std::string& blfunc, |
---|
| 974 | int order); |
---|
[2737] | 975 | double doGetRms(const std::vector<bool>& mask, const casa::Vector<casa::Float>& spec); |
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[2767] | 976 | std::string packFittingResults(const int irow, const std::vector<float>& params, const float rms); |
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| 977 | void parseBlInfo(const std::string& blInfo, int& whichrow, STBaselineFunc::FuncName& ftype, std::vector<int>& fpar, std::vector<bool>& mask, float& thresClip, int& nIterClip, bool& useLineFinder, float& thresLF, std::vector<int>& edgeLF, int& avgLF); |
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| 978 | std::vector<float> doApplyBaselineTable(std::vector<float>& spec, std::vector<bool>& mask, const STBaselineFunc::FuncName ftype, std::vector<int>& fpar, std::vector<float>& params, float&rms); |
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| 979 | std::vector<float> doSubtractBaseline(std::vector<float>& spec, std::vector<bool>& mask, const STBaselineFunc::FuncName ftype, std::vector<int>& fpar, std::vector<float>& params, float&rms, std::vector<bool>& finalmask, float clipth, int clipn, bool uself, int irow, float lfth, std::vector<int>& lfedge, int lfavg); |
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[2713] | 980 | |
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[2] | 981 | }; |
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[824] | 982 | } // namespace |
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| 983 | |
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[2] | 984 | #endif |
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