source: trunk/src/Scantable.h@ 2114

Last change on this file since 2114 was 2111, checked in by Kana Sugimoto, 14 years ago

New Development: No

JIRA Issue: No

Ready for Test: Yes

Interface Changes: Yes

What Interface Changed:

Test Programs: sdlist unit tests

Put in Release Notes: No

Module(s): scantable

Description:

Put header summarizing part of code Scantable::summary to a new function Scantable::headerSummary.
The function is accessible from python level using scantable._list_header()


  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 21.8 KB
RevLine 
[824]1//
2// C++ Interface: Scantable
3//
4// Description:
5//
6//
7// Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2005
8//
9// Copyright: See COPYING file that comes with this distribution
10//
11//
12#ifndef ASAPSCANTABLE_H
13#define ASAPSCANTABLE_H
[2]14
15// STL
16#include <string>
17#include <vector>
[2012]18#include <iostream>
19#include <fstream>
[2]20// AIPS++
[455]21#include <casa/aips.h>
[1931]22#include <casa/Containers/Record.h>
[322]23#include <casa/Arrays/MaskedArray.h>
[80]24#include <casa/BasicSL/String.h>
[824]25#include <casa/Utilities/CountedPtr.h>
26
[80]27#include <tables/Tables/Table.h>
[322]28#include <tables/Tables/ArrayColumn.h>
29#include <tables/Tables/ScalarColumn.h>
30
[824]31#include <measures/TableMeasures/ScalarMeasColumn.h>
32
[1598]33#include <coordinates/Coordinates/SpectralCoordinate.h>
34
[1819]35#include <casa/Arrays/Vector.h>
36#include <casa/Quanta/Quantum.h>
37
38#include <casa/Exceptions/Error.h>
39
[894]40#include "Logger.h"
[901]41#include "STHeader.h"
[824]42#include "STFrequencies.h"
43#include "STWeather.h"
44#include "STFocus.h"
45#include "STTcal.h"
46#include "STMolecules.h"
47#include "STSelector.h"
[860]48#include "STHistory.h"
[896]49#include "STPol.h"
[960]50#include "STFit.h"
[972]51#include "STFitEntry.h"
[1907]52#include "STFitter.h"
[2]53
[824]54namespace asap {
[2]55
[824]56/**
57 * This class contains and wraps a casa::Table, which is used to store
58 * all the information. This can be either a MemoryTable or a
59 * disk based Table.
60 * It provides access functions to the underlying table
61 * It contains n subtables:
62 * @li weather
63 * @li frequencies
64 * @li molecules
65 * @li tcal
66 * @li focus
67 * @li fits
68 *
69 * @brief The main ASAP data container
70 * @author Malte Marquarding
71 * @date
72 * @version
73*/
[890]74class Scantable : private Logger
[824]75{
[902]76
77friend class STMath;
78
[2]79public:
[824]80 /**
81 * Default constructor
82 */
[1350]83 explicit Scantable(casa::Table::TableType ttype = casa::Table::Memory);
[19]84
[824]85 /**
86 * Create a Scantable object form an existing table on disk
87 * @param[in] name the name of the existing Scantable
88 */
[1385]89 explicit Scantable(const std::string& name, casa::Table::TableType ttype = casa::Table::Memory);
[2]90
[824]91 /// @fixme this is only sensible for MemoryTables....
92 Scantable(const Scantable& other, bool clear=true);
[161]93
[824]94 /**
95 * Destructor
96 */
97 virtual ~Scantable();
[745]98
[824]99 /**
100 * get a const reference to the underlying casa::Table
[1104]101 * @return const \ref casa::Table reference
[824]102 */
103 const casa::Table& table() const;
[19]104
[824]105 /**
106 * get a reference to the underlying casa::Table with the Selection
107 * object applied if set
108 * @return casa::Table reference
109 */
110 casa::Table& table();
[21]111
[845]112
113 /**
114 * Get a handle to the selection object
115 * @return constant STSelector reference
116 */
117 const STSelector& getSelection() const { return selector_; }
118
119 /**
120 * Set the data to be a subset as defined by the STSelector
121 * @param selection a STSelector object
122 */
[824]123 void setSelection(const STSelector& selection);
[845]124
125 /**
126 * unset the selection of the data
127 */
[824]128 void unsetSelection();
129 /**
130 * set the header
[1295]131 * @param[in] sth an STHeader object
[824]132 */
[901]133 void setHeader( const STHeader& sth );
[386]134
[824]135 /**
136 * get the header information
[901]137 * @return an STHeader object
[824]138 */
[901]139 STHeader getHeader( ) const;
[1068]140
[824]141 /**
142 * Checks if the "other" Scantable is conformant with this,
143 * i.e. if header values are the same.
144 * @param[in] other another Scantable
145 * @return true or false
146 */
147 bool conformant( const Scantable& other);
[430]148
[824]149 /**
[1068]150 *
151 * @param stype The type of the source, 0 = on, 1 = off
152 */
153 void setSourceType(int stype);
154
155
156 /**
[1104]157 * The number of scans in the table
[824]158 * @return number of scans in the table
159 */
[845]160 int nscan() const;
[490]161
[915]162 casa::MEpoch::Types getTimeReference() const;
[21]163
[1411]164
165 casa::MEpoch getEpoch(int whichrow) const;
166
[824]167 /**
168 * Get global antenna position
[845]169 * @return casa::MPosition
[824]170 */
171 casa::MPosition getAntennaPosition() const;
[490]172
[1441]173 /**
174 * the @ref casa::MDirection for a specific row
175 * @param[in] whichrow the row number
176 * return casa::MDirection
177 */
[987]178 casa::MDirection getDirection( int whichrow ) const;
[1598]179
[1441]180 /**
181 * get the direction type as a string, e.g. "J2000"
182 * @param[in] whichrow the row number
183 * return the direction string
184 */
[1068]185 std::string getDirectionString( int whichrow ) const;
186
[1441]187 /**
188 * set the direction type as a string, e.g. "J2000"
189 * @param[in] refstr the direction type
190 */
[987]191 void setDirectionRefString(const std::string& refstr="");
[1441]192
[1104]193 /**
194 * get the direction reference string
195 * @return a string describing the direction reference
196 */
[1598]197 std::string getDirectionRefString() const;
[987]198
[824]199 /**
[845]200 * Return the Flux unit of the data, e.g. "Jy" or "K"
201 * @return string
[824]202 */
203 std::string getFluxUnit() const;
[472]204
[824]205 /**
[845]206 * Set the Flux unit of the data
207 * @param unit a string representing the unit, e.g "Jy" or "K"
[824]208 */
209 void setFluxUnit( const std::string& unit );
[472]210
[824]211 /**
[1189]212 * Set the Stokes type of the data
[1295]213 * @param feedtype a string representing the type, e.g "circular" or "linear"
[1189]214 */
215 void setFeedType( const std::string& feedtype );
216
217 /**
[824]218 *
[845]219 * @param instrument a string representing an insturment. see xxx
[824]220 */
221 void setInstrument( const std::string& instrument );
[2]222
[845]223 /**
224 * (Re)calculate the azimuth and elevationnfor all rows
225 */
[824]226 void calculateAZEL();
[745]227
[824]228 /**
[845]229 * "hard" flag the data, this flags everything selected in setSelection()
[1104]230 * param[in] msk a boolean mask of length nchan describing the points to
231 * to be flagged
[824]232 */
[1430]233 //void flag( const std::vector<bool>& msk = std::vector<bool>());
[1994]234 //void flag( const std::vector<bool>& msk = std::vector<bool>(), bool unflag=false);
[455]235
[1994]236 void flag( int whichrow = -1, const std::vector<bool>& msk = std::vector<bool>(), bool unflag=false);
237
[852]238 /**
[1819]239 * Flag the data in a row-based manner. (CAS-1433 Wataru Kawasaki)
240 * param[in] rows list of row numbers to be flagged
241 */
242 void flagRow( const std::vector<casa::uInt>& rows = std::vector<casa::uInt>(), bool unflag=false);
243
244 /**
245 * Get flagRow info at the specified row. If true, the whole data
246 * at the row should be flagged.
247 */
248 bool getFlagRow(int whichrow) const
249 { return (flagrowCol_(whichrow) > 0); }
250
251 /**
252 * Flag the data outside a specified range (in a channel-based manner).
253 * (CAS-1807 Wataru Kawasaki)
254 */
255 void clip(const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag);
256
257 /**
258 * Return a list of booleans with the size of nchan for a specified row, to get info
259 * about which channel is clipped.
260 */
261 std::vector<bool> getClipMask(int whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag);
262 void srchChannelsToClip(casa::uInt whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag,
263 casa::Vector<casa::uChar> flgs);
264
265 /**
[852]266 * Return a list of row numbers with respect to the original table.
[902]267 * @return a list of unsigned ints
[852]268 */
269 std::vector<unsigned int> rownumbers() const;
[845]270
[852]271
[845]272 /**
273 * Get the number of beams in the data or a specific scan
274 * @param scanno the scan number to get the number of beams for.
275 * If scanno<0 the number is retrieved from the header.
276 * @return an integer number
277 */
[824]278 int nbeam(int scanno=-1) const;
[845]279 /**
280 * Get the number of IFs in the data or a specific scan
281 * @param scanno the scan number to get the number of IFs for.
282 * If scanno<0 the number is retrieved from the header.
283 * @return an integer number
284 */
[824]285 int nif(int scanno=-1) const;
[845]286 /**
287 * Get the number of polarizations in the data or a specific scan
288 * @param scanno the scan number to get the number of polarizations for.
289 * If scanno<0 the number is retrieved from the header.
290 * @return an integer number
291 */
[824]292 int npol(int scanno=-1) const;
[794]293
[896]294 std::string getPolType() const;
295
[845]296
297 /**
298 * Get the number of integartion cycles
299 * @param scanno the scan number to get the number of rows for.
300 * If scanno<0 the number is retrieved from the header.
[1104]301 * @return the number of rows (for the specified scanno)
[845]302 */
[824]303 int nrow(int scanno=-1) const;
[794]304
[1111]305 int getBeam(int whichrow) const;
[1694]306 std::vector<uint> getBeamNos() const { return getNumbers(beamCol_); }
[50]307
[847]308 int getIF(int whichrow) const;
[1694]309 std::vector<uint> getIFNos() const { return getNumbers(ifCol_); }
[1111]310
[847]311 int getPol(int whichrow) const;
[1694]312 std::vector<uint> getPolNos() const { return getNumbers(polCol_); }
[1111]313
[1694]314 std::vector<uint> getScanNos() const { return getNumbers(scanCol_); }
[865]315 int getScan(int whichrow) const { return scanCol_(whichrow); }
[1111]316
[1819]317 //TT addition
318 std::vector<uint> getMolNos() {return getNumbers(mmolidCol_); }
319
[1111]320 /**
321 * Get the number of channels in the data or a specific IF. This currently
322 * varies only with IF number
323 * @param ifno the IF number to get the number of channels for.
324 * If ifno<0 the number is retrieved from the header.
325 * @return an integer number
326 */
327 int nchan(int ifno=-1) const;
[923]328 int getChannels(int whichrow) const;
[206]329
[1111]330 int ncycle(int scanno=-1) const;
331 int getCycle(int whichrow) const { return cycleCol_(whichrow); }
332
[847]333 double getInterval(int whichrow) const
334 { return integrCol_(whichrow); }
[845]335
[865]336 float getTsys(int whichrow) const
337 { return casa::Vector<casa::Float>(tsysCol_(whichrow))(0); }
[847]338 float getElevation(int whichrow) const
339 { return elCol_(whichrow); }
340 float getAzimuth(int whichrow) const
341 { return azCol_(whichrow); }
[865]342 float getParAngle(int whichrow) const
[1819]343 { return focus().getParAngle(mfocusidCol_(whichrow)); }
344 int getTcalId(int whichrow) const
345 { return mtcalidCol_(whichrow); }
[386]346
[865]347 std::string getSourceName(int whichrow) const
348 { return srcnCol_(whichrow); }
349
[847]350 std::vector<bool> getMask(int whichrow) const;
[896]351 std::vector<float> getSpectrum(int whichrow,
[905]352 const std::string& poltype = "" ) const;
[847]353
[884]354 void setSpectrum(const std::vector<float>& spec, int whichrow);
355
[902]356 std::string getPolarizationLabel(int index, const std::string& ptype) const
357 { return STPol::getPolLabel(index, ptype ); }
[401]358
[845]359 /**
360 * Write the Scantable to disk
361 * @param filename the output file name
362 */
[824]363 void makePersistent(const std::string& filename);
[745]364
[860]365 std::vector<std::string> getHistory() const
366 { return historyTable_.getHistory(); };
[483]367
[860]368 void addHistory(const std::string& hist) { historyTable_.addEntry(hist); }
[488]369
[860]370 void appendToHistoryTable(const STHistory& otherhist)
371 { historyTable_.append(otherhist); }
372
[2111]373 std::string headerSummary(bool verbose=false);
[824]374 std::string summary(bool verbose=false);
[1947]375 //std::string getTime(int whichrow=-1, bool showdate=true) const;
376 std::string getTime(int whichrow=-1, bool showdate=true, casa::uInt prec=0) const;
[1350]377 double getIntTime(int whichrow) const { return integrCol_(whichrow); }
[19]378
[847]379 // returns unit, conversion frame, doppler, base-frame
[18]380
[847]381 /**
382 * Get the frequency set up
383 * This is forwarded to the STFrequencies subtable
384 * @return unit, frame, doppler
385 */
386 std::vector<std::string> getCoordInfo() const
387 { return freqTable_.getInfo(); };
388
389 void setCoordInfo(std::vector<string> theinfo)
390 { return freqTable_.setInfo(theinfo); };
391
[865]392
393 std::vector<double> getAbcissa(int whichrow) const;
394
[1730]395 std::vector<float> getWeather(int whichrow) const;
396
[847]397 std::string getAbcissaLabel(int whichrow) const;
398 std::vector<double> getRestFrequencies() const
399 { return moleculeTable_.getRestFrequencies(); }
[1819]400 std::vector<double> getRestFrequency(int id) const
401 { return moleculeTable_.getRestFrequency(id); }
[847]402
[1819]403 /**
[1170]404 void setRestFrequencies(double rf, const std::string& name = "",
405 const std::string& = "Hz");
[1819]406 **/
407 // Modified by Takeshi Nakazato 05/09/2008
408 /***
409 void setRestFrequencies(vector<double> rf, const vector<std::string>& name = "",
410 const std::string& = "Hz");
411 ***/
412 void setRestFrequencies(vector<double> rf,
413 const vector<std::string>& name = vector<std::string>(1,""),
414 const std::string& = "Hz");
[847]415
[1819]416 //void setRestFrequencies(const std::string& name);
417 void setRestFrequencies(const vector<std::string>& name);
418
[1360]419 void shift(int npix);
420
[1598]421 casa::SpectralCoordinate getSpectralCoordinate(int whichrow) const;
422
[987]423 void convertDirection(const std::string& newframe);
424
[824]425 STFrequencies& frequencies() { return freqTable_; }
[1375]426 const STFrequencies& frequencies() const { return freqTable_; }
[824]427 STWeather& weather() { return weatherTable_; }
[1375]428 const STWeather& weather() const { return weatherTable_; }
[824]429 STFocus& focus() { return focusTable_; }
[1375]430 const STFocus& focus() const { return focusTable_; }
[824]431 STTcal& tcal() { return tcalTable_; }
[1375]432 const STTcal& tcal() const { return tcalTable_; }
[824]433 STMolecules& molecules() { return moleculeTable_; }
[1375]434 const STMolecules& molecules() const { return moleculeTable_; }
[860]435 STHistory& history() { return historyTable_; }
[1375]436 const STHistory& history() const { return historyTable_; }
[972]437 STFit& fit() { return fitTable_; }
[1375]438 const STFit& fit() const { return fitTable_; }
[2]439
[902]440 std::vector<std::string> columnNames() const;
[896]441
[972]442 void addFit(const STFitEntry& fit, int row);
443 STFitEntry getFit(int row) const
444 { STFitEntry fe; fitTable_.getEntry(fe, mfitidCol_(row)); return fe; }
445
[1391]446 //Added by TT
447 /**
448 * Get the antenna name
449 * @return antenna name string
450 */
[1819]451 casa::String getAntennaName() const;
[1391]452
453 /**
454 * For GBT MS data only. check a scan list
455 * against the information found in GBT_GO table for
456 * scan number orders to get correct pairs.
457 * @param[in] scan list
458 * @return status
459 */
460 int checkScanInfo(const std::vector<int>& scanlist) const;
461
462 /**
463 * Get the direction as a vector, for a specific row
464 * @param[in] whichrow the row numbyyer
465 * @return the direction in a vector
466 */
467 std::vector<double> getDirectionVector(int whichrow) const;
468
[1586]469 /**
470 * Set a flag indicating whether the data was parallactified
471 * @param[in] flag true or false
472 */
[1598]473 void parallactify(bool flag)
[1727]474 { focus().setParallactify(flag); }
475
[1819]476 /**
477 * Reshape spectrum
478 * @param[in] nmin, nmax minimum and maximum channel
479 * @param[in] irow row number
480 *
481 * 30/07/2008 Takeshi Nakazato
482 **/
483 void reshapeSpectrum( int nmin, int nmax ) throw( casa::AipsError );
484 void reshapeSpectrum( int nmin, int nmax, int irow ) ;
485
486 /**
487 * Change channel number under fixed bandwidth
488 * @param[in] nchan, dnu new channel number and spectral resolution
489 * @param[in] irow row number
490 *
491 * 27/08/2008 Takeshi Nakazato
492 **/
493 void regridChannel( int nchan, double dnu ) ;
494 void regridChannel( int nchan, double dnu, int irow ) ;
495
[2047]496 bool getFlagtraFast(casa::uInt whichrow);
[1819]497
[2012]498 void polyBaseline(const std::vector<bool>& mask,
499 int order,
[2094]500 bool getResidual=true,
[2012]501 bool outLogger=false,
502 const std::string& blfile="");
503 void autoPolyBaseline(const std::vector<bool>& mask,
504 int order,
505 const std::vector<int>& edge,
506 float threshold=3.0,
507 int chanAvgLimit=1,
[2094]508 bool getResidual=true,
[2012]509 bool outLogger=false,
510 const std::string& blfile="");
511 void cubicSplineBaseline(const std::vector<bool>& mask,
512 int nPiece,
513 float thresClip,
514 int nIterClip,
[2094]515 bool getResidual=true,
[2012]516 bool outLogger=false,
517 const std::string& blfile="");
518 void autoCubicSplineBaseline(const std::vector<bool>& mask,
519 int nPiece,
520 float thresClip,
521 int nIterClip,
522 const std::vector<int>& edge,
523 float threshold=3.0,
524 int chanAvgLimit=1,
[2094]525 bool getResidual=true,
[2012]526 bool outLogger=false,
527 const std::string& blfile="");
[2047]528 void sinusoidBaseline(const std::vector<bool>& mask,
[2081]529 const std::vector<int>& nWaves,
530 float maxWaveLength,
[2047]531 float thresClip,
532 int nIterClip,
[2081]533 bool getResidual=true,
[2047]534 bool outLogger=false,
535 const std::string& blfile="");
536 void autoSinusoidBaseline(const std::vector<bool>& mask,
[2081]537 const std::vector<int>& nWaves,
538 float maxWaveLength,
[2047]539 float thresClip,
540 int nIterClip,
541 const std::vector<int>& edge,
542 float threshold=3.0,
543 int chanAvgLimit=1,
[2081]544 bool getResidual=true,
[2047]545 bool outLogger=false,
546 const std::string& blfile="");
[2012]547 float getRms(const std::vector<bool>& mask, int whichrow);
548 std::string formatBaselineParams(const std::vector<float>& params,
549 const std::vector<bool>& fixed,
550 float rms,
551 const std::string& masklist,
552 int whichrow,
[2064]553 bool verbose=false,
554 int start=-1,
555 int count=-1,
556 bool resetparamid=false) const;
[2012]557 std::string formatPiecewiseBaselineParams(const std::vector<int>& ranges,
558 const std::vector<float>& params,
559 const std::vector<bool>& fixed,
560 float rms,
561 const std::string& masklist,
562 int whichrow,
563 bool verbose=false) const;
[1907]564
[2012]565
[824]566private:
[896]567
568 casa::Matrix<casa::Float> getPolMatrix( casa::uInt whichrow ) const;
569
[824]570 /**
[2005]571 * Turns a time value into a formatted string
[824]572 * @param x
573 * @return
574 */
575 std::string formatSec(casa::Double x) const;
[18]576
[824]577 std::string formatTime(const casa::MEpoch& me, bool showdate)const;
[1947]578 std::string formatTime(const casa::MEpoch& me, bool showdate, casa::uInt prec)const;
[22]579
[824]580 /**
581 * Turns a casa::MDirection into a nicely formatted string
582 * @param md an casa::MDirection
583 * @return
584 */
585 std::string formatDirection(const casa::MDirection& md) const;
[19]586
[824]587 /**
588 * Create a unique file name for the paged (temporary) table
589 * @return just the name
590 */
591 static casa::String generateName();
[286]592
[824]593 /**
594 * attach to cached columns
595 */
596 void attach();
[50]597
[824]598 /**
599 * Set up the main casa::Table
600 */
601 void setupMainTable();
[88]602
[859]603 void attachSubtables();
[865]604 void copySubtables(const Scantable& other);
605
[824]606 /**
607 * Convert an "old" asap1 style row index into a new index
608 * @param[in] therow
609 * @return and index into @table_
610 */
611 int rowToScanIndex(int therow);
[212]612
[1694]613 std::vector<uint> getNumbers(const casa::ScalarColumn<casa::uInt>& col) const;
[1111]614
[1586]615 static const casa::uInt version_ = 3;
[286]616
[824]617 STSelector selector_;
[236]618
[824]619 casa::Table::TableType type_;
[465]620
[824]621 // the actual data
622 casa::Table table_;
623 casa::Table originalTable_;
[745]624
[824]625 STTcal tcalTable_;
626 STFrequencies freqTable_;
627 STWeather weatherTable_;
628 STFocus focusTable_;
629 STMolecules moleculeTable_;
[860]630 STHistory historyTable_;
[960]631 STFit fitTable_;
[860]632
[824]633 // Cached Columns to avoid reconstructing them for each row get/put
[847]634 casa::ScalarColumn<casa::Double> integrCol_;
[824]635 casa::MDirection::ScalarColumn dirCol_;
[847]636 casa::MEpoch::ScalarColumn timeCol_;
[923]637 casa::ScalarColumn<casa::Float> azCol_;
638 casa::ScalarColumn<casa::Float> elCol_;
[824]639 casa::ScalarColumn<casa::String> srcnCol_, fldnCol_;
[1819]640 casa::ScalarColumn<casa::uInt> scanCol_, beamCol_, ifCol_, polCol_, cycleCol_, flagrowCol_;
[1068]641 casa::ScalarColumn<casa::Int> rbeamCol_, srctCol_;
[865]642 casa::ArrayColumn<casa::Float> specCol_, tsysCol_;
[824]643 casa::ArrayColumn<casa::uChar> flagsCol_;
[430]644
[824]645 // id in frequencies table
646 casa::ScalarColumn<casa::uInt> mfreqidCol_;
647 // id in tcal table
648 casa::ScalarColumn<casa::uInt> mtcalidCol_;
[430]649
[824]650 casa::ArrayColumn<casa::String> histitemCol_;
[972]651 casa::ScalarColumn<casa::Int> mfitidCol_;
[824]652 casa::ScalarColumn<casa::uInt> mweatheridCol_;
[322]653
[824]654 casa::ScalarColumn<casa::uInt> mfocusidCol_;
655
656 casa::ScalarColumn<casa::uInt> mmolidCol_;
657
[896]658 static std::map<std::string, STPol::STPolFactory *> factories_;
659 void initFactories();
660
[1819]661 /**
662 * Add an auxiliary column to the main table and attach it to a
663 * cached column. Use for adding new columns that the original asap2
664 * tables do not have.
665 * @param[in] col reference to the cached column to be attached
666 * @param[in] colName column name in asap table
667 * @param[in] defValue default value to fill in the column
668 *
669 * 25/10/2009 Wataru Kawasaki
670 */
671 template<class T, class T2> void attachAuxColumnDef(casa::ScalarColumn<T>&,
672 const casa::String&,
673 const T2&);
674 template<class T, class T2> void attachAuxColumnDef(casa::ArrayColumn<T>&,
675 const casa::String&,
676 const casa::Array<T2>&);
[1907]677
[2012]678 void fitBaseline(const std::vector<bool>& mask, int whichrow, Fitter& fitter);
679 std::vector<float> doCubicSplineFitting(const std::vector<float>& data,
680 const std::vector<bool>& mask,
[2081]681 int nPiece,
[2064]682 std::vector<int>& idxEdge,
[2012]683 std::vector<float>& params,
684 float thresClip=3.0,
[2058]685 int nIterClip=1,
[2094]686 bool getResidual=true);
[2047]687 std::vector<float> doSinusoidFitting(const std::vector<float>& data,
688 const std::vector<bool>& mask,
[2081]689 const std::vector<int>& waveNumbers,
690 float maxWaveLength,
[2047]691 std::vector<float>& params,
692 float thresClip=3.0,
[2058]693 int nIterClip=1,
[2094]694 bool getResidual=true);
[2012]695 bool hasSameNchanOverIFs();
696 std::string getMaskRangeList(const std::vector<bool>& mask,
697 int whichrow,
698 const casa::String& coordInfo,
[2047]699 bool hasSameNchan,
700 bool verbose=false);
701 std::vector<int> getMaskEdgeIndices(const std::vector<bool>& mask);
[2012]702 std::string formatBaselineParamsHeader(int whichrow, const std::string& masklist, bool verbose) const;
703 std::string formatBaselineParamsFooter(float rms, bool verbose) const;
704 std::vector<bool> getCompositeChanMask(int whichrow, const std::vector<bool>& inMask);
705 //std::vector<bool> getCompositeChanMask(int whichrow, const std::vector<bool>& inMask, const std::vector<int>& edge, const int minEdgeSize, STLineFinder& lineFinder);
[2047]706 void outputFittingResult(bool outLogger, bool outTextFile, const std::vector<bool>& chanMask, int whichrow, const casa::String& coordInfo, bool hasSameNchan, std::ofstream& ofs, const casa::String& funcName, Fitter& fitter);
[2081]707 void outputFittingResult(bool outLogger, bool outTextFile, const std::vector<bool>& chanMask, int whichrow, const casa::String& coordInfo, bool hasSameNchan, std::ofstream& ofs, const casa::String& funcName, const std::vector<int>& edge, const std::vector<float>& params);
708 void outputFittingResult(bool outLogger, bool outTextFile, const std::vector<bool>& chanMask, int whichrow, const casa::String& coordInfo, bool hasSameNchan, std::ofstream& ofs, const casa::String& funcName, const std::vector<float>& params);
[1994]709
710 void applyChanFlag( casa::uInt whichrow, const std::vector<bool>& msk, casa::uChar flagval);
711
712
[2]713};
714
[824]715} // namespace
716
[2]717#endif
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