[824] | 1 | // |
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| 2 | // C++ Interface: Scantable |
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| 3 | // |
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| 4 | // Description: |
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| 5 | // |
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| 6 | // |
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| 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2005 |
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| 8 | // |
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| 9 | // Copyright: See COPYING file that comes with this distribution |
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| 10 | // |
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| 11 | // |
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| 12 | #ifndef ASAPSCANTABLE_H |
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| 13 | #define ASAPSCANTABLE_H |
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[2] | 14 | |
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| 15 | // STL |
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| 16 | #include <string> |
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| 17 | #include <vector> |
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| 18 | // AIPS++ |
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[455] | 19 | #include <casa/aips.h> |
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[322] | 20 | #include <casa/Arrays/MaskedArray.h> |
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[80] | 21 | #include <casa/BasicSL/String.h> |
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[824] | 22 | #include <casa/Utilities/CountedPtr.h> |
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| 23 | |
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[80] | 24 | #include <tables/Tables/Table.h> |
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[322] | 25 | #include <tables/Tables/ArrayColumn.h> |
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| 26 | #include <tables/Tables/ScalarColumn.h> |
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| 27 | |
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[824] | 28 | #include <measures/TableMeasures/ScalarMeasColumn.h> |
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| 29 | |
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[894] | 30 | #include "Logger.h" |
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[901] | 31 | #include "STHeader.h" |
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[824] | 32 | #include "STFrequencies.h" |
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| 33 | #include "STWeather.h" |
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| 34 | #include "STFocus.h" |
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| 35 | #include "STTcal.h" |
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| 36 | #include "STMolecules.h" |
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| 37 | #include "STSelector.h" |
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[860] | 38 | #include "STHistory.h" |
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[896] | 39 | #include "STPol.h" |
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[960] | 40 | #include "STFit.h" |
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[972] | 41 | #include "STFitEntry.h" |
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[2] | 42 | |
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[824] | 43 | namespace asap { |
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[2] | 44 | |
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[824] | 45 | /** |
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| 46 | * This class contains and wraps a casa::Table, which is used to store |
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| 47 | * all the information. This can be either a MemoryTable or a |
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| 48 | * disk based Table. |
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| 49 | * It provides access functions to the underlying table |
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| 50 | * It contains n subtables: |
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| 51 | * @li weather |
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| 52 | * @li frequencies |
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| 53 | * @li molecules |
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| 54 | * @li tcal |
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| 55 | * @li focus |
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| 56 | * @li fits |
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| 57 | * |
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| 58 | * @brief The main ASAP data container |
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| 59 | * @author Malte Marquarding |
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| 60 | * @date |
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| 61 | * @version |
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| 62 | */ |
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[890] | 63 | class Scantable : private Logger |
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[824] | 64 | { |
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[902] | 65 | |
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| 66 | friend class STMath; |
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| 67 | |
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[2] | 68 | public: |
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[824] | 69 | /** |
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| 70 | * Default constructor |
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| 71 | */ |
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[1350] | 72 | explicit Scantable(casa::Table::TableType ttype = casa::Table::Memory); |
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[19] | 73 | |
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[824] | 74 | /** |
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| 75 | * Create a Scantable object form an existing table on disk |
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| 76 | * @param[in] name the name of the existing Scantable |
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| 77 | */ |
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[1385] | 78 | explicit Scantable(const std::string& name, casa::Table::TableType ttype = casa::Table::Memory); |
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[2] | 79 | |
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[824] | 80 | /// @fixme this is only sensible for MemoryTables.... |
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| 81 | Scantable(const Scantable& other, bool clear=true); |
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[161] | 82 | |
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[824] | 83 | /** |
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| 84 | * Destructor |
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| 85 | */ |
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| 86 | virtual ~Scantable(); |
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[745] | 87 | |
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[824] | 88 | /** |
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| 89 | * get a const reference to the underlying casa::Table |
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[1104] | 90 | * @return const \ref casa::Table reference |
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[824] | 91 | */ |
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| 92 | const casa::Table& table() const; |
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[19] | 93 | |
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[824] | 94 | /** |
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| 95 | * get a reference to the underlying casa::Table with the Selection |
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| 96 | * object applied if set |
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| 97 | * @return casa::Table reference |
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| 98 | */ |
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| 99 | casa::Table& table(); |
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[21] | 100 | |
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[845] | 101 | |
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| 102 | /** |
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| 103 | * Get a handle to the selection object |
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| 104 | * @return constant STSelector reference |
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| 105 | */ |
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| 106 | const STSelector& getSelection() const { return selector_; } |
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| 107 | |
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| 108 | /** |
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| 109 | * Set the data to be a subset as defined by the STSelector |
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| 110 | * @param selection a STSelector object |
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| 111 | */ |
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[824] | 112 | void setSelection(const STSelector& selection); |
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[845] | 113 | |
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| 114 | /** |
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| 115 | * unset the selection of the data |
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| 116 | */ |
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[824] | 117 | void unsetSelection(); |
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| 118 | /** |
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| 119 | * set the header |
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[1295] | 120 | * @param[in] sth an STHeader object |
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[824] | 121 | */ |
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[901] | 122 | void setHeader( const STHeader& sth ); |
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[386] | 123 | |
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[824] | 124 | /** |
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| 125 | * get the header information |
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[901] | 126 | * @return an STHeader object |
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[824] | 127 | */ |
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[901] | 128 | STHeader getHeader( ) const; |
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[1068] | 129 | |
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[824] | 130 | /** |
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| 131 | * Checks if the "other" Scantable is conformant with this, |
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| 132 | * i.e. if header values are the same. |
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| 133 | * @param[in] other another Scantable |
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| 134 | * @return true or false |
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| 135 | */ |
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| 136 | bool conformant( const Scantable& other); |
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[430] | 137 | |
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[824] | 138 | /** |
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[1068] | 139 | * |
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| 140 | * @param stype The type of the source, 0 = on, 1 = off |
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| 141 | */ |
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| 142 | void setSourceType(int stype); |
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| 143 | |
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| 144 | |
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| 145 | /** |
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[1104] | 146 | * The number of scans in the table |
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[824] | 147 | * @return number of scans in the table |
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| 148 | */ |
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[845] | 149 | int nscan() const; |
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[490] | 150 | |
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[915] | 151 | casa::MEpoch::Types getTimeReference() const; |
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[21] | 152 | |
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[1411] | 153 | |
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| 154 | casa::MEpoch getEpoch(int whichrow) const; |
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| 155 | |
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[824] | 156 | /** |
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| 157 | * Get global antenna position |
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[845] | 158 | * @return casa::MPosition |
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[824] | 159 | */ |
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| 160 | casa::MPosition getAntennaPosition() const; |
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[490] | 161 | |
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[1441] | 162 | /** |
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| 163 | * the @ref casa::MDirection for a specific row |
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| 164 | * @param[in] whichrow the row number |
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| 165 | * return casa::MDirection |
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| 166 | */ |
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[987] | 167 | casa::MDirection getDirection( int whichrow ) const; |
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[1441] | 168 | |
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| 169 | /** |
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| 170 | * get the direction type as a string, e.g. "J2000" |
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| 171 | * @param[in] whichrow the row number |
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| 172 | * return the direction string |
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| 173 | */ |
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[1068] | 174 | std::string getDirectionString( int whichrow ) const; |
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| 175 | |
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[1441] | 176 | /** |
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| 177 | * set the direction type as a string, e.g. "J2000" |
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| 178 | * @param[in] refstr the direction type |
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| 179 | */ |
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[987] | 180 | void setDirectionRefString(const std::string& refstr=""); |
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[1441] | 181 | |
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[1104] | 182 | /** |
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| 183 | * get the direction reference string |
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| 184 | * @return a string describing the direction reference |
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| 185 | */ |
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[1441] | 186 | std::string getDirectionRefString() const; |
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[987] | 187 | |
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[824] | 188 | /** |
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[845] | 189 | * Return the Flux unit of the data, e.g. "Jy" or "K" |
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| 190 | * @return string |
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[824] | 191 | */ |
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| 192 | std::string getFluxUnit() const; |
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[472] | 193 | |
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[824] | 194 | /** |
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[845] | 195 | * Set the Flux unit of the data |
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| 196 | * @param unit a string representing the unit, e.g "Jy" or "K" |
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[824] | 197 | */ |
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| 198 | void setFluxUnit( const std::string& unit ); |
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[472] | 199 | |
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[824] | 200 | /** |
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[1189] | 201 | * Set the Stokes type of the data |
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[1295] | 202 | * @param feedtype a string representing the type, e.g "circular" or "linear" |
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[1189] | 203 | */ |
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| 204 | void setFeedType( const std::string& feedtype ); |
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| 205 | |
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| 206 | /** |
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[824] | 207 | * |
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[845] | 208 | * @param instrument a string representing an insturment. see xxx |
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[824] | 209 | */ |
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| 210 | void setInstrument( const std::string& instrument ); |
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[2] | 211 | |
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[845] | 212 | /** |
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| 213 | * (Re)calculate the azimuth and elevationnfor all rows |
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| 214 | */ |
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[824] | 215 | void calculateAZEL(); |
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[745] | 216 | |
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[824] | 217 | /** |
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[845] | 218 | * "hard" flag the data, this flags everything selected in setSelection() |
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[1104] | 219 | * param[in] msk a boolean mask of length nchan describing the points to |
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| 220 | * to be flagged |
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[824] | 221 | */ |
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[1430] | 222 | //void flag( const std::vector<bool>& msk = std::vector<bool>()); |
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| 223 | void flag( const std::vector<bool>& msk = std::vector<bool>(), bool unflag=false); |
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[455] | 224 | |
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[852] | 225 | /** |
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| 226 | * Return a list of row numbers with respect to the original table. |
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[902] | 227 | * @return a list of unsigned ints |
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[852] | 228 | */ |
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| 229 | std::vector<unsigned int> rownumbers() const; |
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[845] | 230 | |
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[852] | 231 | |
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[845] | 232 | /** |
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| 233 | * Get the number of beams in the data or a specific scan |
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| 234 | * @param scanno the scan number to get the number of beams for. |
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| 235 | * If scanno<0 the number is retrieved from the header. |
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| 236 | * @return an integer number |
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| 237 | */ |
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[824] | 238 | int nbeam(int scanno=-1) const; |
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[845] | 239 | /** |
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| 240 | * Get the number of IFs in the data or a specific scan |
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| 241 | * @param scanno the scan number to get the number of IFs for. |
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| 242 | * If scanno<0 the number is retrieved from the header. |
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| 243 | * @return an integer number |
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| 244 | */ |
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[824] | 245 | int nif(int scanno=-1) const; |
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[845] | 246 | /** |
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| 247 | * Get the number of polarizations in the data or a specific scan |
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| 248 | * @param scanno the scan number to get the number of polarizations for. |
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| 249 | * If scanno<0 the number is retrieved from the header. |
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| 250 | * @return an integer number |
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| 251 | */ |
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[824] | 252 | int npol(int scanno=-1) const; |
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[794] | 253 | |
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[896] | 254 | std::string getPolType() const; |
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| 255 | |
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[845] | 256 | |
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| 257 | /** |
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| 258 | * Get the number of integartion cycles |
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| 259 | * @param scanno the scan number to get the number of rows for. |
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| 260 | * If scanno<0 the number is retrieved from the header. |
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[1104] | 261 | * @return the number of rows (for the specified scanno) |
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[845] | 262 | */ |
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[824] | 263 | int nrow(int scanno=-1) const; |
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[794] | 264 | |
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[1111] | 265 | int getBeam(int whichrow) const; |
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| 266 | std::vector<uint> getBeamNos() { return getNumbers(beamCol_); } |
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[50] | 267 | |
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[847] | 268 | int getIF(int whichrow) const; |
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[1111] | 269 | std::vector<uint> getIFNos() { return getNumbers(ifCol_); } |
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| 270 | |
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[847] | 271 | int getPol(int whichrow) const; |
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[1111] | 272 | std::vector<uint> getPolNos() { return getNumbers(polCol_); } |
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| 273 | |
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| 274 | std::vector<uint> getScanNos() { return getNumbers(scanCol_); } |
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[865] | 275 | int getScan(int whichrow) const { return scanCol_(whichrow); } |
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[1111] | 276 | |
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| 277 | /** |
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| 278 | * Get the number of channels in the data or a specific IF. This currently |
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| 279 | * varies only with IF number |
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| 280 | * @param ifno the IF number to get the number of channels for. |
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| 281 | * If ifno<0 the number is retrieved from the header. |
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| 282 | * @return an integer number |
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| 283 | */ |
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| 284 | int nchan(int ifno=-1) const; |
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[923] | 285 | int getChannels(int whichrow) const; |
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[206] | 286 | |
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[1111] | 287 | int ncycle(int scanno=-1) const; |
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| 288 | int getCycle(int whichrow) const { return cycleCol_(whichrow); } |
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| 289 | |
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[847] | 290 | double getInterval(int whichrow) const |
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| 291 | { return integrCol_(whichrow); } |
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[845] | 292 | |
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[865] | 293 | float getTsys(int whichrow) const |
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| 294 | { return casa::Vector<casa::Float>(tsysCol_(whichrow))(0); } |
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[847] | 295 | float getElevation(int whichrow) const |
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| 296 | { return elCol_(whichrow); } |
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| 297 | float getAzimuth(int whichrow) const |
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| 298 | { return azCol_(whichrow); } |
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[865] | 299 | float getParAngle(int whichrow) const |
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[847] | 300 | { return paraCol_(whichrow); } |
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[386] | 301 | |
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[865] | 302 | std::string getSourceName(int whichrow) const |
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| 303 | { return srcnCol_(whichrow); } |
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| 304 | |
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[847] | 305 | std::vector<bool> getMask(int whichrow) const; |
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[896] | 306 | std::vector<float> getSpectrum(int whichrow, |
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[905] | 307 | const std::string& poltype = "" ) const; |
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[847] | 308 | |
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[884] | 309 | void setSpectrum(const std::vector<float>& spec, int whichrow); |
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| 310 | |
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[902] | 311 | std::string getPolarizationLabel(int index, const std::string& ptype) const |
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| 312 | { return STPol::getPolLabel(index, ptype ); } |
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[401] | 313 | |
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[845] | 314 | /** |
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| 315 | * Write the Scantable to disk |
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| 316 | * @param filename the output file name |
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| 317 | */ |
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[824] | 318 | void makePersistent(const std::string& filename); |
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[745] | 319 | |
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[860] | 320 | std::vector<std::string> getHistory() const |
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| 321 | { return historyTable_.getHistory(); }; |
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[483] | 322 | |
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[860] | 323 | void addHistory(const std::string& hist) { historyTable_.addEntry(hist); } |
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[488] | 324 | |
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[860] | 325 | void appendToHistoryTable(const STHistory& otherhist) |
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| 326 | { historyTable_.append(otherhist); } |
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| 327 | |
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[824] | 328 | std::string summary(bool verbose=false); |
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| 329 | std::string getTime(int whichrow=-1, bool showdate=true) const; |
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[1350] | 330 | double getIntTime(int whichrow) const { return integrCol_(whichrow); } |
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[19] | 331 | |
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[847] | 332 | // returns unit, conversion frame, doppler, base-frame |
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[18] | 333 | |
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[847] | 334 | /** |
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| 335 | * Get the frequency set up |
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| 336 | * This is forwarded to the STFrequencies subtable |
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| 337 | * @return unit, frame, doppler |
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| 338 | */ |
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| 339 | std::vector<std::string> getCoordInfo() const |
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| 340 | { return freqTable_.getInfo(); }; |
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| 341 | |
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| 342 | void setCoordInfo(std::vector<string> theinfo) |
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| 343 | { return freqTable_.setInfo(theinfo); }; |
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| 344 | |
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[865] | 345 | |
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| 346 | std::vector<double> getAbcissa(int whichrow) const; |
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| 347 | |
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[847] | 348 | std::string getAbcissaLabel(int whichrow) const; |
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| 349 | std::vector<double> getRestFrequencies() const |
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| 350 | { return moleculeTable_.getRestFrequencies(); } |
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| 351 | |
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[1170] | 352 | void setRestFrequencies(double rf, const std::string& name = "", |
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| 353 | const std::string& = "Hz"); |
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[847] | 354 | void setRestFrequencies(const std::string& name); |
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| 355 | |
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[1360] | 356 | void shift(int npix); |
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| 357 | |
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[987] | 358 | void convertDirection(const std::string& newframe); |
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| 359 | |
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[824] | 360 | STFrequencies& frequencies() { return freqTable_; } |
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[1375] | 361 | const STFrequencies& frequencies() const { return freqTable_; } |
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[824] | 362 | STWeather& weather() { return weatherTable_; } |
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[1375] | 363 | const STWeather& weather() const { return weatherTable_; } |
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[824] | 364 | STFocus& focus() { return focusTable_; } |
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[1375] | 365 | const STFocus& focus() const { return focusTable_; } |
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[824] | 366 | STTcal& tcal() { return tcalTable_; } |
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[1375] | 367 | const STTcal& tcal() const { return tcalTable_; } |
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[824] | 368 | STMolecules& molecules() { return moleculeTable_; } |
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[1375] | 369 | const STMolecules& molecules() const { return moleculeTable_; } |
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[860] | 370 | STHistory& history() { return historyTable_; } |
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[1375] | 371 | const STHistory& history() const { return historyTable_; } |
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[972] | 372 | STFit& fit() { return fitTable_; } |
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[1375] | 373 | const STFit& fit() const { return fitTable_; } |
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[2] | 374 | |
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[902] | 375 | std::vector<std::string> columnNames() const; |
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[896] | 376 | |
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[972] | 377 | void addFit(const STFitEntry& fit, int row); |
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| 378 | STFitEntry getFit(int row) const |
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| 379 | { STFitEntry fe; fitTable_.getEntry(fe, mfitidCol_(row)); return fe; } |
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| 380 | |
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[1391] | 381 | //Added by TT |
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| 382 | /** |
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| 383 | * Get the antenna name |
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| 384 | * @return antenna name string |
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| 385 | */ |
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| 386 | std::string getAntennaName() const; |
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| 387 | |
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| 388 | /** |
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| 389 | * For GBT MS data only. check a scan list |
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| 390 | * against the information found in GBT_GO table for |
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| 391 | * scan number orders to get correct pairs. |
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| 392 | * @param[in] scan list |
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| 393 | * @return status |
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| 394 | */ |
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| 395 | int checkScanInfo(const std::vector<int>& scanlist) const; |
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| 396 | |
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| 397 | /** |
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| 398 | * Get the direction as a vector, for a specific row |
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| 399 | * @param[in] whichrow the row numbyyer |
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| 400 | * @return the direction in a vector |
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| 401 | */ |
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| 402 | std::vector<double> getDirectionVector(int whichrow) const; |
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| 403 | |
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[824] | 404 | private: |
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[896] | 405 | |
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| 406 | casa::Matrix<casa::Float> getPolMatrix( casa::uInt whichrow ) const; |
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| 407 | |
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[824] | 408 | /** |
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| 409 | * Turns a time vale into a formatted string |
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| 410 | * @param x |
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| 411 | * @return |
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| 412 | */ |
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| 413 | std::string formatSec(casa::Double x) const; |
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[18] | 414 | |
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[824] | 415 | std::string formatTime(const casa::MEpoch& me, bool showdate)const; |
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[22] | 416 | |
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[824] | 417 | /** |
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| 418 | * Turns a casa::MDirection into a nicely formatted string |
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| 419 | * @param md an casa::MDirection |
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| 420 | * @return |
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| 421 | */ |
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| 422 | std::string formatDirection(const casa::MDirection& md) const; |
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[19] | 423 | |
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[286] | 424 | |
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[824] | 425 | /** |
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| 426 | * Create a unique file name for the paged (temporary) table |
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| 427 | * @return just the name |
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| 428 | */ |
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| 429 | static casa::String generateName(); |
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[286] | 430 | |
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[824] | 431 | /** |
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| 432 | * attach to cached columns |
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| 433 | */ |
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| 434 | void attach(); |
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[50] | 435 | |
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[824] | 436 | /** |
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| 437 | * Set up the main casa::Table |
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| 438 | */ |
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| 439 | void setupMainTable(); |
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[88] | 440 | |
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[859] | 441 | void attachSubtables(); |
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[865] | 442 | void copySubtables(const Scantable& other); |
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| 443 | |
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[824] | 444 | /** |
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| 445 | * Convert an "old" asap1 style row index into a new index |
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| 446 | * @param[in] therow |
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| 447 | * @return and index into @table_ |
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| 448 | */ |
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| 449 | int rowToScanIndex(int therow); |
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[212] | 450 | |
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[1111] | 451 | std::vector<uint> getNumbers(casa::ScalarColumn<casa::uInt>& col); |
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| 452 | |
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[1030] | 453 | static const casa::uInt version_ = 2; |
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[286] | 454 | |
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[824] | 455 | STSelector selector_; |
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[236] | 456 | |
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[824] | 457 | casa::Table::TableType type_; |
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[465] | 458 | |
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[824] | 459 | // the actual data |
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| 460 | casa::Table table_; |
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| 461 | casa::Table originalTable_; |
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[745] | 462 | |
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[824] | 463 | STTcal tcalTable_; |
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| 464 | STFrequencies freqTable_; |
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| 465 | STWeather weatherTable_; |
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| 466 | STFocus focusTable_; |
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| 467 | STMolecules moleculeTable_; |
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[860] | 468 | STHistory historyTable_; |
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[960] | 469 | STFit fitTable_; |
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[860] | 470 | |
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[824] | 471 | // Cached Columns to avoid reconstructing them for each row get/put |
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[847] | 472 | casa::ScalarColumn<casa::Double> integrCol_; |
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[824] | 473 | casa::MDirection::ScalarColumn dirCol_; |
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[847] | 474 | casa::MEpoch::ScalarColumn timeCol_; |
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[923] | 475 | casa::ScalarColumn<casa::Float> azCol_; |
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| 476 | casa::ScalarColumn<casa::Float> elCol_; |
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[824] | 477 | casa::ScalarColumn<casa::Float> paraCol_; |
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| 478 | casa::ScalarColumn<casa::String> srcnCol_, fldnCol_; |
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[847] | 479 | casa::ScalarColumn<casa::uInt> scanCol_, beamCol_, ifCol_, polCol_, cycleCol_; |
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[1068] | 480 | casa::ScalarColumn<casa::Int> rbeamCol_, srctCol_; |
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[865] | 481 | casa::ArrayColumn<casa::Float> specCol_, tsysCol_; |
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[824] | 482 | casa::ArrayColumn<casa::uChar> flagsCol_; |
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[430] | 483 | |
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[824] | 484 | // id in frequencies table |
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| 485 | casa::ScalarColumn<casa::uInt> mfreqidCol_; |
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| 486 | // id in tcal table |
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| 487 | casa::ScalarColumn<casa::uInt> mtcalidCol_; |
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[430] | 488 | |
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[824] | 489 | casa::ArrayColumn<casa::String> histitemCol_; |
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[972] | 490 | casa::ScalarColumn<casa::Int> mfitidCol_; |
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[824] | 491 | casa::ScalarColumn<casa::uInt> mweatheridCol_; |
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[322] | 492 | |
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[824] | 493 | casa::ScalarColumn<casa::uInt> mfocusidCol_; |
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| 494 | |
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| 495 | casa::ScalarColumn<casa::uInt> mmolidCol_; |
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| 496 | |
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[896] | 497 | static std::map<std::string, STPol::STPolFactory *> factories_; |
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| 498 | void initFactories(); |
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| 499 | |
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[2] | 500 | }; |
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| 501 | |
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[824] | 502 | |
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| 503 | } // namespace |
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| 504 | |
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[2] | 505 | #endif |
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