source: trunk/external-alma/atnf/PKSIO/NROReader.cc @ 2777

Last change on this file since 2777 was 2777, checked in by Takeshi Nakazato, 11 years ago

New Development: No

JIRA Issue: No

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No?

Module(s): Module Names change impacts.

Description: Describe your changes here...

Bug fix on numbering of IFNO/BEAMNO based on Arrays.


File size: 22.4 KB
Line 
1//#---------------------------------------------------------------------------
2//# NROReader.cc: Base class for NRO headerdata.
3//#---------------------------------------------------------------------------
4//# Copyright (C) 2000-2006
5//# Associated Universities, Inc. Washington DC, USA.
6//#
7//# This library is free software; you can redistribute it and/or modify it
8//# under the terms of the GNU Library General Public License as published by
9//# the Free Software Foundation; either version 2 of the License, or (at your
10//# option) any later version.
11//#
12//# This library is distributed in the hope that it will be useful, but WITHOUT
13//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
14//# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
15//# License for more details.
16//#
17//# You should have received a copy of the GNU Library General Public License
18//# along with this library; if not, write to the Free Software Foundation,
19//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
20//#
21//# Correspondence concerning AIPS++ should be addressed as follows:
22//#        Internet email: aips2-request@nrao.edu.
23//#        Postal address: AIPS++ Project Office
24//#                        National Radio Astronomy Observatory
25//#                        520 Edgemont Road
26//#                        Charlottesville, VA 22903-2475 USA
27//#
28//# $Id$
29//#---------------------------------------------------------------------------
30//# Original: 2008/10/30, Takeshi Nakazato, NAOJ
31//#---------------------------------------------------------------------------
32
33#include <atnf/PKSIO/NROReader.h>
34#include <atnf/PKSIO/NRO45Reader.h>
35#include <atnf/PKSIO/ASTEReader.h>
36#include <atnf/PKSIO/ASTEFXReader.h>
37#include <atnf/PKSIO/NRO45FITSReader.h>
38#include <atnf/PKSIO/NROOTFDataset.h>
39#include <atnf/PKSIO/ASTEDataset.h>
40
41#include <measures/Measures/MEpoch.h>
42#include <measures/Measures/MPosition.h>
43#include <measures/Measures/MDirection.h>
44#include <measures/Measures/MCDirection.h>
45#include <measures/Measures/MeasFrame.h>
46#include <measures/Measures/MeasConvert.h>
47
48#include <casa/Logging/LogIO.h>
49#include <casa/IO/RegularFileIO.h>
50#include <casa/OS/File.h>
51#include <casa/OS/Time.h>
52
53#include <stdio.h>
54#include <string>
55#include <iomanip>
56
57using namespace std ;
58
59//
60// getNROReader
61//
62// Return an appropriate NROReader for a NRO 45m and ASTE dataset.
63//
64NROReader *getNROReader( const String filename,
65                         String &datatype )
66{
67  LogIO os( LogOrigin( "", "getNROReader()", WHERE ) ) ;
68
69  // Check accessibility of the input.
70  File inFile( filename ) ;
71  if ( !inFile.exists() ) {
72    datatype = filename + " not found." ;
73    return 0 ;
74  }
75
76  if ( !inFile.isReadable() ) {
77    datatype = filename + " is not readable." ;
78    return 0 ;
79  }
80
81  // Determine the type of input.
82  NROReader *reader = 0;
83  if ( inFile.isRegular() ) {
84    FILE *file ;
85    file = fopen( filename.c_str(), "r" ) ;
86    // read LOFIL0
87    char buf[9];
88    fread( buf, 4, 1, file ) ;
89    buf[4] = '\0' ;
90    // DEBUG
91    //os << LogIO::NORMAL << "getNROReader:: buf = " << String(buf) << LogIO::POST ;
92    //
93    if ( string( buf ) == "XTEN" ) {
94      // FITS data
95      datatype = "NRO 45m FITS" ;
96      reader = new NRO45FITSReader( filename ) ;
97    }
98    else if ( string( buf ) == "RW-F") {
99      // ASTE-FX data
100      datatype = "ASTE-FX";
101      reader = new ASTEFXReader( filename );
102    } else {
103      // otherwise, read SITE0
104      NRODataset *d = new NROOTFDataset( filename ) ;
105      int size = d->getDataSize() - 188 ;
106      delete d ;
107      fseek( file, size, SEEK_SET ) ;
108      fread( buf, 8, 1, file ) ;
109      buf[8] = '\0' ;
110      // DEBUG
111      //cout << "getNROReader:: buf = " << buf << endl ;
112      //
113      if ( string( buf ) == "NRO" ) {
114        // NRO 45m data
115        datatype = "NRO 45m OTF" ;
116        reader = new NRO45Reader( filename );
117      }
118      else {
119        d = new ASTEDataset( filename ) ;
120        size = d->getDataSize() - 188 ;
121        delete d ;
122        fseek( file, size, SEEK_SET ) ;
123        fread( buf, 8, 1, file ) ;
124        buf[8] = '\0' ;
125        // DEBUG
126        //cout << "getNROReader:: buf = " << buf << endl ;
127        //
128        if ( string( buf ) == "ASTE" ) {
129          // ASTE data
130          datatype = "ASTE" ;
131          reader = new ASTEReader( filename ) ;
132        }
133        else {
134          datatype = "UNRECOGNIZED INPUT FORMAT";
135        }
136      }
137    }
138    fclose( file ) ;
139  } else {
140    datatype = "UNRECOGNIZED INPUT FORMAT";
141  }
142
143  // DEBUG
144  os << LogIO::NORMAL << "Data format of " << filename << ": " << datatype << LogIO::POST ;
145  //
146
147  // return reader if exists
148  if ( reader ) {
149    reader->read() ;
150    return reader ;
151  }
152
153  return 0 ;
154}
155
156
157//
158// getNROReader
159//
160// Search a list of directories for a NRO 45m and ASTE dataset and return an
161// appropriate NROReader for it.
162//
163NROReader* getNROReader( const String name,
164                         const Vector<String> directories,
165                         int &iDir,
166                         String &datatype )
167{
168  int nDir = directories.size();
169  for ( iDir = 0; iDir < nDir; iDir++ ) {
170    string inName = directories[iDir] + "/" + name;
171    NROReader *reader = getNROReader( inName, datatype ) ;
172
173    if (reader != 0) {
174      return reader;
175    }
176  }
177
178  iDir = -1;
179  return 0;
180}
181
182
183//----------------------------------------------------------------------
184// constructor
185NROReader::NROReader( string name )
186  : dataset_( NULL ),
187    srcdir_( 0 ),
188    msrcdir_( 0 ),
189    freqRefFromVREF_( false ) // import frequency as REST
190{
191  // initialization
192  filename_ = name ;
193  coord_ = -1 ;
194}
195
196// destructor
197NROReader::~NROReader()
198{
199}
200
201// set frequency reference frame
202void NROReader::setFreqRefFromVREF( bool fromVREF )
203{
204  os_.origin( LogOrigin( "NROReader", "setFreqRefFromVREF", WHERE ) ) ;
205  os_ << ((fromVREF) ? "Take frequency reference frame from VREF" :
206          "Use frequency reference frame REST") << LogIO::POST ;
207
208  freqRefFromVREF_ = fromVREF ;
209}
210
211// get spectrum
212vector< vector<double> > NROReader::getSpectrum()
213{
214  return dataset_->getSpectrum() ;
215}
216
217Int NROReader::getPolarizationNum()
218{
219  return dataset_->getPolarizationNum() ;
220}
221
222double NROReader::getStartTime()
223{
224  //char *startTime = dataset_->getLOSTM() ;
225  string startTime = dataset_->getLOSTM() ;
226  //cout << "getStartTime()  startTime = " << startTime << endl ;
227  return getMJD( startTime ) ;
228}
229
230double NROReader::getEndTime()
231{
232  //char *endTime = dataset_->getLOETM() ;
233  string endTime = dataset_->getLOETM() ;
234  return getMJD( endTime ) ;
235}
236
237vector<double> NROReader::getStartIntTime()
238{
239  return dataset_->getStartIntTime() ;
240}
241
242double NROReader::getMJD( char *time )
243{
244  // TODO: should be checked which time zone the time depends on
245  // 2008/11/14 Takeshi Nakazato
246  string strStartTime = string( time ) ;
247  string strYear = strStartTime.substr( 0, 4 ) ;
248  string strMonth = strStartTime.substr( 4, 2 ) ;
249  string strDay = strStartTime.substr( 6, 2 ) ;
250  string strHour = strStartTime.substr( 8, 2 ) ;
251  string strMinute = strStartTime.substr( 10, 2 ) ;
252  string strSecond = strStartTime.substr( 12, strStartTime.size() - 12 ) ;
253  uInt year = atoi( strYear.c_str() ) ;
254  uInt month = atoi( strMonth.c_str() ) ;
255  uInt day = atoi( strDay.c_str() ) ;
256  uInt hour = atoi( strHour.c_str() ) ;
257  uInt minute = atoi( strMinute.c_str() ) ;
258  double second = atof( strSecond.c_str() ) ;
259  Time t( year, month, day, hour, minute, second ) ;
260
261  return t.modifiedJulianDay() ;
262}
263
264double NROReader::getMJD( string strStartTime )
265{
266  // TODO: should be checked which time zone the time depends on
267  // 2008/11/14 Takeshi Nakazato
268  string strYear = strStartTime.substr( 0, 4 ) ;
269  string strMonth = strStartTime.substr( 4, 2 ) ;
270  string strDay = strStartTime.substr( 6, 2 ) ;
271  string strHour = strStartTime.substr( 8, 2 ) ;
272  string strMinute = strStartTime.substr( 10, 2 ) ;
273  string strSecond = strStartTime.substr( 12, strStartTime.size() - 12 ) ;
274  uInt year = atoi( strYear.c_str() ) ;
275  uInt month = atoi( strMonth.c_str() ) ;
276  uInt day = atoi( strDay.c_str() ) ;
277  uInt hour = atoi( strHour.c_str() ) ;
278  uInt minute = atoi( strMinute.c_str() ) ;
279  double second = atof( strSecond.c_str() ) ;
280  Time t( year, month, day, hour, minute, second ) ;
281
282  return t.modifiedJulianDay() ;
283}
284
285vector<Bool> NROReader::getIFs()
286{
287  return dataset_->getIFs() ;
288}
289
290vector<Bool> NROReader::getBeams()
291{
292  vector<Bool> v ;
293  vector<int> arry = dataset_->getARRY() ;
294  for ( uInt i = 0 ; i < arry.size() ; i++ ) {
295    if ( arry[i] != 0 ) {
296      v.push_back( True ) ;
297    }
298  }
299
300  // DEBUG
301  //cout << "NROReader::getBeams()   number of beam is " << v.size() << endl ;
302  //
303
304  return v ;
305}
306
307// Get SRCDIRECTION in RADEC(J2000)
308Vector<Double> NROReader::getSourceDirection()
309{
310  if ( msrcdir_.nelements() == 2 )
311    return msrcdir_ ;
312
313  srcdir_.resize( 2 ) ;
314  srcdir_[0] = Double( dataset_->getRA0() ) ;
315  srcdir_[1] = Double( dataset_->getDEC0() ) ;
316  char epoch[5] ;
317  strncpy( epoch, (dataset_->getEPOCH()).c_str(), 5 ) ;
318  if ( strncmp( epoch, "B1950", 5 ) == 0 ) {
319    // convert to J2000 value
320    MDirection result =
321      MDirection::Convert( MDirection( Quantity( srcdir_[0], "rad" ),
322                                       Quantity( srcdir_[1], "rad" ),
323                                       MDirection::Ref( MDirection::B1950 ) ),
324                           MDirection::Ref( MDirection::J2000 ) ) () ;
325    msrcdir_ = result.getAngle().getValue() ;
326    if ( msrcdir_[0] < 0.0 && srcdir_[0] >= 0.0 )
327      msrcdir_[0] = 2.0 * M_PI + msrcdir_[0] ;
328    //cout << "NROReader::getSourceDirection()  SRCDIRECTION convert from ("
329    //<< srcra << "," << srcdec << ") B1950 to ("
330    //<< v( 0 ) << ","<< v( 1 ) << ") J2000" << endl ;
331    //LogIO os( LogOrigin( "NROReader", "getSourceDirection()", WHERE ) ) ;
332    //os << LogIO::NORMAL << "SRCDIRECTION convert from ("
333    //   << srcra << "," << srcdec << ") B1950 to ("
334    //   << v( 0 ) << ","<< v( 1 ) << ") J2000" << LogIO::POST ;
335  }
336  else if ( strncmp( epoch, "J2000", 5 ) == 0 ) {
337    msrcdir_.reference( srcdir_ ) ;
338  }
339   
340  return msrcdir_ ;
341}
342
343// Get DIRECTION in RADEC(J2000)
344Vector<Double> NROReader::getDirection( int i )
345{
346  Vector<Double> v( 2 ) ;
347  const NRODataRecord *record = dataset_->getRecord( i ) ;
348  char epoch[5] ;
349  strncpy( epoch, (dataset_->getEPOCH()).c_str(), 5 ) ;
350  int icoord = dataset_->getSCNCD() ;
351  double scantime = dataset_->getScanTime( i ) ;
352  initConvert( icoord, scantime, epoch ) ;
353  v[0]= Double( record->SCX ) ;
354  v[1] = Double( record->SCY ) ;
355  if ( converter_.null() )
356    // no conversion
357    return v ;
358  else {
359    Vector<Double> v2 = (*converter_)( v ).getAngle().getValue() ;
360    if ( v2[0] < 0.0 && v[0] >= 0.0 )
361      v2[0] = 2.0 * M_PI + v2[0] ;
362    return v2 ;
363  }
364}
365
366void NROReader::initConvert( int icoord, double t, char *epoch )
367{
368  if ( icoord == 0 && strncmp( epoch, "J2000", 5 ) == 0 )
369    // no conversion
370    return ;
371
372  if ( converter_.null() || icoord != coord_ ) {
373    LogIO os( LogOrigin( "NROReader", "initConvert()", WHERE ) ) ;
374    coord_ = icoord ;
375    if ( coord_ == 0 ) {
376      // RADEC (B1950) -> RADEC (J2000)
377      os << "Creating converter from RADEC (B1950) to RADEC (J2000)" << LogIO::POST ;
378      converter_ = new MDirection::Convert( MDirection::B1950,
379                                            MDirection::J2000 ) ;
380    }
381    else if ( coord_ == 1 ) {
382      // LB -> RADEC (J2000)
383      os << "Creating converter from GALACTIC to RADEC (J2000)" << LogIO::POST ;
384      converter_ = new MDirection::Convert( MDirection::GALACTIC,
385                                            MDirection::J2000 ) ;
386    }
387    else {
388      // coord_ == 2
389      // AZEL -> RADEC (J2000)
390      os << "Creating converter from AZEL to RADEC (J2000)" << LogIO::POST ;
391      if ( mf_.null() ) {
392        mf_ = new MeasFrame() ;
393        vector<double> antpos = getAntennaPosition() ;
394        Vector<Quantity> qantpos( 3 ) ;
395        for ( int ip = 0 ; ip < 3 ; ip++ )
396          qantpos[ip] = Quantity( antpos[ip], "m" ) ;
397        mp_ = MPosition( MVPosition( qantpos ), MPosition::ITRF ) ;
398        mf_->set( mp_ ) ;
399      }
400      converter_ = new MDirection::Convert( MDirection::AZEL,
401                                            MDirection::Ref(MDirection::J2000,
402                                                            *mf_ ) ) ;
403    }
404  }
405
406  if ( coord_ == 2 ) {
407    me_ = MEpoch( Quantity( t, "d" ), MEpoch::UTC ) ;
408    mf_->set( me_ ) ;
409  }
410}
411
412int NROReader::getHeaderInfo( Int &nchan,
413                              Int &npol,
414                              Int &nif,
415                              Int &nbeam,
416                              String &observer,
417                              String &project,
418                              String &obstype,
419                              String &antname,
420                              Vector<Double> &antpos,
421                              Float &equinox,
422                              String &freqref,
423                              Double &reffreq,
424                              Double &bw,
425                              Double &utc,
426                              String &fluxunit,
427                              String &epoch,
428                              String &poltype )
429
430  nchan = dataset_->getNUMCH() ;
431  //cout << "nchan = " << nchan << endl ;
432  npol = getPolarizationNum() ;
433  //cout << "npol = " << npol << endl ;
434  observer = dataset_->getOBSVR() ;
435  //cout << "observer = " << observer << endl ;
436  project = dataset_->getPROJ() ;
437  //cout << "project = " << project << endl ;
438  obstype = dataset_->getSWMOD() ;
439  //cout << "obstype = " << obstype << endl ;
440  antname = dataset_->getSITE() ;
441  //cout << "antname = " << antname << endl ;
442  // TODO: should be investigated antenna position since there are
443  //       no corresponding information in the header
444  // 2008/11/13 Takeshi Nakazato
445  //
446  // INFO: tentative antenna posiiton is obtained for NRO 45m from ITRF website
447  // 2008/11/26 Takeshi Nakazato
448  vector<double> pos = getAntennaPosition() ;
449  antpos = pos ;
450  //cout << "antpos = " << antpos << endl ;
451  string eq = dataset_->getEPOCH() ;
452//   if ( eq.compare( 0, 5, "B1950" ) == 0 )
453//     equinox = 1950.0 ;
454//   else if ( eq.compare( 0, 5, "J2000" ) == 0 )
455//     equinox = 2000.0 ;
456  // equinox is always 2000.0
457  equinox = 2000.0 ;
458  //cout << "equinox = " << equinox << endl ;
459  string vref = dataset_->getVREF() ;
460  if ( vref.compare( 0, 3, "LSR" ) == 0 ) {
461    if ( vref.size() == 3 ) {
462      vref.append( "K" ) ;
463    }
464    else {
465      vref[3] = 'K' ;
466    }
467  }
468  else if ( vref.compare( 0, 3, "GAL" ) == 0 ) {
469    vref = "GALACTO" ;
470  }
471  else if (vref.compare( 0, 3, "HEL" ) == 0 ) {
472    os_.origin( LogOrigin( "NROReader", "getHeaderInfo", WHERE ) ) ;
473    os_ << LogIO::WARN << "Heliocentric frame is not supported. Use Barycentric frame instead." << LogIO::POST ;
474    vref = "BARY" ;
475  }
476  //freqref = vref ;
477  //freqref = "LSRK" ;
478  //freqref = "REST" ;
479  freqref = freqRefFromVREF_ ? vref : "REST" ;
480  //cout << "freqref = " << freqref << endl ;
481  const NRODataRecord *record = dataset_->getRecord( 0 ) ;
482  reffreq = record->FREQ0 ; // rest frequency
483
484  //cout << "reffreq = " << reffreq << endl ;
485  bw = dataset_->getBEBW()[0] ;
486  //cout << "bw = " << bw << endl ;
487  utc = getStartTime() ;
488  //cout << "utc = " << utc << endl ;
489  fluxunit = "K" ;
490  //cout << "fluxunit = " << fluxunit << endl ;
491  epoch = "UTC" ; 
492  //cout << "epoch = " << epoch << endl ;
493  string poltp = dataset_->getPOLTP()[0] ;
494  //cout << "poltp = '" << poltp << "'" << endl ;
495  if ( poltp == "" || poltp[0] == ' ' )
496    //poltp = "None" ;
497    poltp = "linear" ;   // if no polarization type specified, set to "linear"
498  //else if ( strcmp( poltp, "LINR" ) == 0 )
499  else if ( poltp.compare( 0, 1, "LINR", 0, 1 ) == 0 )
500    poltp = "linear" ;
501  //else if ( strcmp( poltp, "CIRL" ) == 0 )
502  else if ( poltp.compare( 0, 1, "CIRL", 0, 1 ) == 0 )
503    poltp = "circular" ;
504  poltype = poltp ;
505  //cout << "poltype = " << poltype << endl ;
506
507  //vector<Bool> ifs = getIFs() ;
508  //nif = ifs.size() ;
509  nif = getNumIF() ;
510  //cout << "nif = " << nif << endl ;
511
512  //vector<Bool> beams = getBeams() ;
513  //nbeam = beams.size() ;
514  nbeam = getNumBeam() ;
515  //cout << "nbeam = " << nbeam << endl ;
516
517  return 0 ;
518}
519
520string NROReader::getScanType( int i )
521{
522  const NRODataRecord *record = dataset_->getRecord( i ) ;
523  string s = record->SCANTP ;
524
525  return s ;
526}
527
528int NROReader::getScanInfo( int irow,
529                            uInt &scanno,
530                            uInt &cycleno,
531                            uInt &ifno,
532                            uInt &beamno,
533                            uInt &polno,
534                            vector<double> &freqs,   
535                            Vector<Double> &restfreq,
536                            uInt &refbeamno,
537                            Double &scantime,
538                            Double &interval,
539                            String &srcname,
540                            String &fieldname,
541                            Vector<Float> &spectra,
542                            Vector<uChar> &flagtra,
543                            Vector<Float> &tsys,
544                            Vector<Double> &direction,
545                            Float &azimuth,
546                            Float &elevation,
547                            Float &parangle,
548                            Float &opacity,
549                            uInt &tcalid,
550                            Int &fitid,
551                            uInt &focusid,
552                            Float &temperature, 
553                            Float &pressure,     
554                            Float &humidity,     
555                            Float &windvel,     
556                            Float &winddir,     
557                            Double &srcvel,
558                            Vector<Double> &/*propermotion*/,
559                            Vector<Double> &srcdir,
560                            Vector<Double> &/*scanrate*/ )
561{
562  static const IPosition oneByOne( 1, 1 );
563
564  // DEBUG
565  //cout << "NROReader::getScanInfo()  irow = " << irow << endl ;
566  //
567  NRODataRecord *record = dataset_->getRecord( irow ) ;
568
569  // scanno
570  scanno = (uInt)(record->ISCAN) ;
571  //cout << "scanno = " << scanno << endl ;
572
573  // cycleno
574  cycleno = 0 ;
575  //cout << "cycleno = " << cycleno << endl ;
576
577  // beamno and ifno
578  string rxname = dataset_->getRX()[0] ;
579  if ( rxname.find("MULT2") != string::npos ) {
580    string arryt = string( record->ARRYT ) ;
581    beamno = dataset_->getSortedArrayId( arryt ) ;
582    ifno = 0 ;
583  }
584  else {
585    beamno = 0 ;
586    string arryt = string( record->ARRYT ) ;
587    ifno = dataset_->getSortedArrayId( arryt ) ;
588  }
589  //cout << "beamno = " << beamno << endl ;
590
591  // polno
592  polno = dataset_->getPolNo( irow ) ;
593  //cout << "polno = " << polno << endl ;
594
595  // freqs (for IFNO and FREQ_ID)
596  //freqs = getFrequencies( irow ) ;
597  freqs = dataset_->getFrequencies( irow ) ;
598  //cout << "freqs = [" << freqs[0] << ", " << freqs[1] << ", " << freqs[2] << "]" << endl ;
599
600  if ( freqRefFromVREF_ ) {
601    freqs = shiftFrequency( freqs,
602                            dataset_->getURVEL(),
603                            dataset_->getVDEF() ) ;
604  }
605
606  // restfreq (for MOLECULE_ID)
607  restfreq.resize( oneByOne ) ;
608  restfreq[0] = record->FREQ0 ;
609  //cout << "restfreq = " << rf << endl ;
610
611  // refbeamno
612  refbeamno = 0 ;
613  //cout << "refbeamno = " << refbeamno << endl ;
614
615  // scantime
616  //scantime = Double( dataset_->getStartIntTime( irow ) ) ;
617  scantime = Double( dataset_->getScanTime( irow ) ) ;
618  //cout << "scantime = " << scantime << endl ;
619
620  // interval
621  interval = Double( dataset_->getIPTIM() ) ;
622  //cout << "interval = " << interval << endl ;
623
624  // srcname
625  srcname = String( dataset_->getOBJ() ) ;
626  //cout << "srcname = " << srcname << endl ;
627
628  // fieldname
629  fieldname = String( dataset_->getOBJ() ) ;
630  //cout << "fieldname = " << fieldname << endl ;
631
632  // spectra
633  vector<double> spec = dataset_->getSpectrum( irow ) ;
634  spectra.resize( spec.size() ) ;
635  //int index = 0 ;
636  Bool b ;
637  Float *fp = spectra.getStorage( b ) ;
638  Float *wp = fp ;
639  for ( vector<double>::iterator i = spec.begin() ;
640        i != spec.end() ; i++ ) {
641    *wp = *i ;
642    wp++ ;
643  }
644  spectra.putStorage( fp, b ) ;
645  //cout << "spec.size() = " << spec.size() << endl ;
646 
647  // flagtra
648  bool setValue = !( flagtra.nelements() == spectra.nelements() ) ;
649  if ( setValue ) {
650    //cout << "flagtra resized. reset values..." << endl ;
651    flagtra.resize( spectra.nelements() ) ;
652    flagtra.set( 0 ) ;
653  }
654  //cout << "flag.size() = " << flag.size() << endl ;
655
656  // tsys
657  tsys.resize( oneByOne ) ;
658  tsys[0] = record->TSYS ;
659  //cout << "tsys[0] = " << tsys[0] << endl ;
660
661  // direction
662  direction = getDirection( irow ) ;
663  //cout << "direction = [" << direction[0] << ", " << direction[1] << "]" << endl ;
664
665  // azimuth
666  azimuth = record->RAZ ;
667  //cout << "azimuth = " << azimuth << endl ;
668
669  // elevation
670  elevation = record->REL ;
671  //cout << "elevation = " << elevation << endl ;
672
673  // parangle
674  parangle = 0.0 ;
675  //cout << "parangle = " << parangle << endl ;
676
677  // opacity
678  opacity = 0.0 ;
679  //cout << "opacity = " << opacity << endl ;
680
681  // tcalid
682  tcalid = 0 ;
683  //cout << "tcalid = " << tcalid << endl ;
684
685  // fitid
686  fitid = -1 ;
687  //cout << "fitid = " << fitid << endl ;
688
689  // focusid
690  focusid = 0 ;
691  //cout << "focusid = " << focusid << endl ;
692
693  // temperature (for WEATHER_ID)
694  temperature = Float( record->TEMP ) ;
695  //cout << "temperature = " << temperature << endl ;
696
697  // pressure (for WEATHER_ID)
698  pressure = Float( record->PATM ) ;
699  //cout << "pressure = " << pressure << endl ;
700
701  // humidity (for WEATHER_ID)
702  humidity = Float( record->PH2O ) ;
703  //cout << "humidity = " << humidity << endl ;
704
705  // windvel (for WEATHER_ID)
706  windvel = Float( record->VWIND ) ;
707  //cout << "windvel = " << windvel << endl ;
708
709  // winddir (for WEATHER_ID)
710  winddir = Float( record->DWIND ) ;
711  //cout << "winddir = " << winddir << endl ;
712 
713  // srcvel
714  srcvel = dataset_->getURVEL() ;
715  //cout << "srcvel = " << srcvel << endl ;
716
717  // propermotion
718  // do nothing
719
720  // srcdir
721  srcdir = getSourceDirection() ;
722  //cout << "srcdir = [" << srcdir[0] << ", " << srcdir[1] << endl ;
723
724  // scanrate
725  // do nothing
726
727  return 0 ;
728}
729
730Int NROReader::getRowNum()
731{
732  return dataset_->getRowNum() ;
733}
734
735vector<double> NROReader::shiftFrequency( const vector<double> &f,
736                                          const double &v,
737                                          const string &vdef )
738{
739  vector<double> r( f ) ;
740  double factor = v / 2.99792458e8 ;
741  if ( vdef.compare( 0, 3, "RAD" ) == 0 ) {
742    factor = 1.0 / ( 1.0 + factor ) ;
743    r[1] *= factor ;
744    r[2] *= factor ;
745  }
746  else if ( vdef.compare( 0, 3, "OPT" ) == 0 ) {
747    factor += 1.0 ;
748    r[1] *= factor ;
749    r[2] *= factor ;
750  }
751  else {
752    cout << "vdef=" << vdef << " is not supported." << endl;
753  }
754  return r ;
755}
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