Opened 9 years ago
Last modified 9 years ago
#235 assigned defect
build fails on OSX 10.9.5
Reported by: | Stacy Mader | Owned by: | MatthewWhiting |
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Priority: | normal | Milestone: | |
Component: | Building/Installation | Version: | 1.6.1 |
Severity: | normal | Keywords: | |
Cc: |
Description (last modified by )
./configure --prefix=/usr/local/ --with-wcslib=/usr/local/include --with-pgplot=/usr/local/lib checking build system type... x86_64-apple-darwin13.4.0 checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether ln -s works... yes checking for install... install checking for log in -lm... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking values.h usability... no checking values.h presence... no checking for values.h... no checking iostream usability... no checking iostream presence... no checking for iostream... no checking fstream usability... no checking fstream presence... no checking for fstream... no checking sstream usability... no checking sstream presence... no checking for sstream... no checking iomanip usability... no checking iomanip presence... no checking for iomanip... no checking vector usability... no checking vector presence... no checking for vector... no checking string usability... no checking string presence... no checking for string... no checking algorithm usability... no checking algorithm presence... no checking for algorithm... no checking functional usability... no checking functional presence... no checking for functional... no checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for ranlib... ranlib configure: Using darwin build option checking for working strtod... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strtol... yes checking for log... yes checking for atan... yes checking for fabs... yes configure: LIBDIRS checking for /usr/lib... yes checking for /usr/local/lib... yes checking for /usr/local/pgplot... no checking for /usr/local/cfitsio... yes checking for /usr/local/wcslib... yes checking for /local/lib... no checking for /local/pgplot... no checking for /local/cfitsio... no checking for /opt/SUNWspro/lib... no checking for /opt/local/lib... no configure: -- PGPLOT -- configure: Using directory "/usr/local/lib" checking for /usr/local/lib/cpgplot.h... no checking for /usr/local/lib/pgplot/cpgplot.h... no checking for /usr/local/lib/include/cpgplot.h... no checking for cosd in -lsunmath... no checking for iand_ in -lM77... no checking for f77_init in -lF77... no checking for X... libraries /usr/X11/lib, headers /usr/X11/include checking whether -R must be followed by a space... neither works checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes configure: X-library search yielded X_CFLAGS= -I/usr/X11/include, X_LIBS= -L/usr/X11/lib, X_EXTRA_LIBS=, X_PRE_LIBS= -lSM -lICE checking for deflate in -lz... yes checking for png_error in -lpng... yes checking for pgopen in -lpgplot... yes checking for gerror_ in -lg2c... no checking for main in -lstdc++... yes checking for main in -lc++... yes checking for _gfortran_getenv in -lgfortran... no checking for cpgopen in -lcpgplot... yes configure: PGPLOT appears to be available. checking for /usr/local/lib/libcpgplot.a... yes configure: -- CFITSIO -- checking for /usr/include/fitsio.h... no checking for /usr/include/cfitsio/fitsio.h... no checking for /usr/local/include/fitsio.h... yes checking for recv in -lsocket... no checking for ffopen in -lcfitsio... yes configure: CFITSIO appears to be available. checking for /usr/lib/libcfitsio.a... no checking for /usr/lib/cfitsio/libcfitsio.a... no checking for /usr/local/lib/libcfitsio.a... yes configure: -- WCSLIB -- configure: Using directory "/usr/local/include" checking for /usr/local/include... yes checking for /usr/local/include/lib... no checking for /usr/local/include/wcslib... yes checking for /usr/local/include/wcslib/wcs.h... yes checking for wcss2p in -lwcs... yes checking for cpgsbox in -lpgsbox... no configure: WCSLIB appears to be available. checking for /usr/local/include/libwcs.a... no checking for /usr/local/include/wcs/libwcs.a... no checking for /usr/local/include/wcslib/libwcs.a... no checking for /usr/local/include/lib/libwcs.a... no checking for /usr/local/include/lib/wcs/libwcs.a... no checking for /usr/local/include/lib/wcslib/libwcs.a... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/config.h config.status: src/config.h is unchanged joanne:duchamp mad134$ make g++ -o Duchamp-1.6.1 ./src/mainDuchamp.o ./src/duchamp.o ./src/param.o ./src/fitsHeader.o ./src/PixelMap/Line.o ./src/PixelMap/Voxel.o ./src/PixelMap/Scan.o ./src/PixelMap/Object2D.o ./src/PixelMap/Object3D.o ./src/ATrous/filter.o ./src/ATrous/B3SplineFilter.o ./src/ATrous/TriangleFilter.o ./src/ATrous/HaarFilter.o ./src/ATrous/FilterFactory.o ./src/ATrous/atrous_1d_reconstruct.o ./src/ATrous/atrous_2d_reconstruct.o ./src/ATrous/atrous_3d_reconstruct.o ./src/ATrous/baselineSubtract.o ./src/ATrous/ReconSearch.o ./src/Detection/detection.o ./src/Detection/ObjectGrower.o ./src/Detection/areClose.o ./src/Detection/lutz_detect.o ./src/Detection/mergeIntoList.o ./src/Detection/outputDetection.o ./src/Detection/sorting.o ./src/Detection/spectrumDetect.o ./src/Cubes/cubes.o ./src/Cubes/cubes_extended.o ./src/Cubes/baseline.o ./src/Cubes/CubicSearch.o ./src/Cubes/detectionIO.o ./src/Cubes/existingDetections.o ./src/Cubes/getImage.o ./src/Cubes/invertCube.o ./src/Cubes/Merger.o ./src/Cubes/momentMap.o ./src/Cubes/smoothCube.o ./src/Cubes/spectraUtils.o ./src/Cubes/trimImage.o ./src/FitsIO/Beam.o ./src/FitsIO/DuchampBeam.o ./src/FitsIO/ReadExisting.o ./src/FitsIO/ReadExistingRecon.o ./src/FitsIO/ReadExistingSmooth.o ./src/FitsIO/WriteArray.o ./src/FitsIO/WriteBaselineArray.o ./src/FitsIO/WriteMaskArray.o ./src/FitsIO/WriteMomentMapArray.o ./src/FitsIO/WriteMomentMaskArray.o ./src/FitsIO/WriteReconArray.o ./src/FitsIO/WriteSmoothArray.o ./src/FitsIO/dataIO.o ./src/FitsIO/headerIO.o ./src/FitsIO/subsection.o ./src/FitsIO/wcsIO.o ./src/Utils/Section.o ./src/Utils/Statistics.o ./src/Utils/feedback.o ./src/Utils/GaussSmooth1D.o ./src/Utils/Hanning.o ./src/Utils/VOField.o ./src/Utils/VOParam.o ./src/Utils/getStats.o ./src/Utils/getNormalStats.o ./src/Utils/getRobustStats.o ./src/Utils/linear_regression.o ./src/Utils/medianBaseline.o ./src/Utils/position_related.o ./src/Utils/sort.o ./src/Utils/string_related.o ./src/Utils/wcsFunctions.o ./src/Utils/zscale.o ./src/Outputs/columns.o ./src/Outputs/CatalogueSpecification.o ./src/Outputs/CatalogueWriter.o ./src/Outputs/FileCatalogueWriter.o ./src/Outputs/ASCIICatalogueWriter.o ./src/Outputs/VOTableCatalogueWriter.o ./src/Outputs/AnnotationWriter.o ./src/Outputs/KarmaAnnotationWriter.o ./src/Outputs/DS9AnnotationWriter.o ./src/Outputs/CasaAnnotationWriter.o ./src/Cubes/drawBlankEdges.o ./src/Cubes/drawMomentCutout.o ./src/Cubes/outputSpectra.o ./src/Cubes/plotting.o ./src/Detection/drawBorders.o ./src/Plotting/DuchampPlot.o ./src/Plotting/MultipleDuchampPlot.o ./src/Plotting/ImagePlot.o ./src/Plotting/SpectralPlot.o ./src/Plotting/SimpleSpectralPlot.o ./src/Plotting/CutoutPlot.o ./src/Utils/mycpgplot.o ./src/Utils/PlottingUtilities.o ./src/Utils/pgplot_related.o -lwcs -L/usr/local/lib -lcfitsio -L/usr/local/lib -lcpgplot -lpgplot -L/usr/X11/lib -lSM -lICE -lX11 -lz -lpng -lc++ -lstdc++ -lm Undefined symbols for architecture x86_64: "_cpgsbox", referenced from: wcsAxes(wcsprm*, unsigned long*, int, int) in PlottingUtilities.o "_pgwcsl_", referenced from: wcsAxes(wcsprm*, unsigned long*, int, int) in PlottingUtilities.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [duchamp] Error 1
Change History (3)
comment:1 Changed 9 years ago by
comment:2 Changed 9 years ago by
Description: | modified (diff) |
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Status: | new → assigned |
comment:3 Changed 9 years ago by
It looks like the cpgsbox part of WCSLIB is not present:
checking for cpgsbox in -lpgsbox... no
This needs to be installed as well, and is a separate step from the base WCSLIB C code. Did you build it from source? The pgsbox code is in a separate directory that may need to be built and/or installed with a separate step.
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I have built using the following: