#212 closed defect (fixed)
Build problems on OS X Mavericks (10.9)
| Reported by: | MatthewWhiting | Owned by: | MatthewWhiting |
|---|---|---|---|
| Priority: | high | Milestone: | Release-1.6 |
| Component: | Building/Installation | Version: | 1.5 |
| Severity: | normal | Keywords: | |
| Cc: |
Description
When building Duchamp on my recently-upgraded macbook pro, I got the following error when linking:
Undefined symbols for architecture x86_64:
"std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::rfind(char, unsigned long) const", referenced from:
duchamp::Cube::plotDetectionMap(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >) in plotting.o
duchamp::Cube::plotMomentMap(std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >) in plotting.o
"std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::compare(char const*) const", referenced from:
duchamp::Param::readParams(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >) in param.o
duchamp::Param::checkPars() in param.o
duchamp::Param::getObjectChoices(int) in param.o
duchamp::operator<<(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, duchamp::Param&) in param.o
duchamp::Param::outputReconFile() in param.o
duchamp::Param::outputResidFile() in param.o
duchamp::Param::outputSmoothFile() in param.o
...
"std::__1::__vector_base_common<true>::__throw_length_error() const", referenced from:
std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::vector(std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > > const&) in mainDuchamp.o
<snip>
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
make: *** [duchamp] Error 1
This needs to be resolved for the next release.
Change History (26)
comment:1 Changed 10 years ago by
| Status: | new → assigned |
|---|
comment:3 Changed 10 years ago by
So I'm currently working on a different laptop, also running Mavericks, and have had to install the three dependencies and get around the strange gfortran library (gfortran is present, but the libgfortran is in a non-useful location). Here is what finally worked:
./configure --prefix=/Users/whi550 --with-cfitsio=/Users/whi550/Duchamp/DuchampInstall --with-wcslib=/Users/whi550/Duchamp/DuchampInstall --with-pgplot=/Users/whi550/Duchamp/DuchampInstall LIBS="-L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib -lgfortran"
The important bit is the LIBS option to configure. This passes the "-L -l" pair to *both* configure and to the Makefile, and this will make the build and linking work correctly. As it is now doing on this laptop.
(Well, other than the fact that I can't see any fonts in the pgplot graphics, but that's another issue...)
comment:4 Changed 10 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Closing this, as I'm actually happy it is building on 10.9 now with these tweaks.
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Diagnosed problem as being due to conflicting c++ libraries.
If I replace the -lstdc++ with -lc++ in the final linking statement, all is good.
Have added (in [1349]) an extra test in the configure script to pick out libc++ if it is present. It will appear before libstdc++ in the linking statement, although that probably doesn't matter as they'll be dynamic libraries.
Appears to work fine on linux as well.