Opened 16 years ago
Closed 16 years ago
#39 closed defect (fixed)
Specifying threshold doesn't override flagFDR
| Reported by: | MatthewWhiting | Owned by: | MatthewWhiting |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input | Version: | 1.1.5 |
| Severity: | normal | Keywords: | |
| Cc: |
Description
When you manually specify a threshold, it will override the value of snrCut. However, it does not override the use of the FDR method, so if you have flagFDR=true somewhere in your input file, and you add threshold=blah without changing flagFDR, the value of the threshold will not be used.
Change History (2)
comment:1 Changed 16 years ago by
| Status: | new → assigned |
|---|
comment:2 Changed 16 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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The FDR method is now set turned off when a threshold is specified, and no statistics are calculated.
This necessitated the introduction of a growthThreshold parameter, that must be used when the threshold is specified, else growing is not done.