1 | #include <iostream> |
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2 | #include <fstream> |
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3 | #include <string> |
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4 | #include <cpgplot.h> |
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5 | #include <math.h> |
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6 | #include <unistd.h> |
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7 | #include <time.h> |
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8 | |
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9 | #include <duchamp.hh> |
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10 | #include <param.hh> |
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11 | #include <Detection/voxel.hh> |
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12 | #include <Detection/detection.hh> |
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13 | #include <Cubes/cubes.hh> |
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14 | #include <Utils/utils.hh> |
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15 | #include <ATrous/atrous.hh> |
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16 | |
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17 | int main(int argc, char * argv[]) |
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18 | { |
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19 | |
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20 | std::string paramFile,fitsfile,temp; |
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21 | Cube *cube = new Cube; |
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22 | |
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23 | if(cube->getopts(argc,argv)==FAILURE) return FAILURE; |
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24 | |
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25 | if(cube->pars().getImageFile().empty()){ |
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26 | std::stringstream errmsg; |
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27 | errmsg << "No input image has been given!\n" |
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28 | << "Use the imageFile parameter in " |
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29 | << paramFile << " to specify the FITS file.\nExiting...\n"; |
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30 | duchampError("Duchamp", errmsg.str()); |
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31 | return FAILURE; |
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32 | } |
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33 | |
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34 | if(cube->pars().getFlagSubsection()){ |
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35 | // make sure the subsection is OK. |
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36 | if(cube->pars().verifySubsection() == FAILURE){ |
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37 | duchampError("Duchamp", |
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38 | "Unable to use the subsection provided.\nExiting...\n"); |
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39 | return FAILURE; |
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40 | } |
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41 | } |
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42 | |
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43 | std::cout << "Opening image: " |
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44 | << cube->pars().getFullImageFile() << std::endl; |
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45 | |
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46 | if( cube->getCube() == FAILURE){ |
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47 | std::stringstream errmsg; |
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48 | errmsg << "Unable to open image file " |
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49 | << cube->pars().getFullImageFile() |
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50 | << "\nExiting...\n"; |
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51 | duchampError("Duchamp", errmsg.str()); |
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52 | return FAILURE; |
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53 | } |
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54 | else std::cout << "Opened successfully." << std::endl; |
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55 | |
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56 | // Read in any saved arrays that are in FITS files on disk. |
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57 | cube->readSavedArrays(); |
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58 | |
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59 | |
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60 | std::ifstream logfile(cube->pars().getLogFile().c_str()); |
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61 | |
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62 | if(!logfile.is_open()){ |
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63 | std::cerr << "\aUnable to open file " |
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64 | << cube->pars().getLogFile() << "\nExiting...\n"; |
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65 | return 1; |
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66 | } |
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67 | |
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68 | // read down until first Detection # line |
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69 | cube->setCubeStats(); |
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70 | std::cerr << "Reading from logfile : " << cube->pars().getLogFile() << "\n"; |
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71 | while(getline(logfile,temp), temp.substr(0,11)!="Detection #"){ } |
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72 | int xpix, ypix, zpix; |
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73 | float fpix; |
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74 | while(!logfile.eof()){ |
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75 | Detection obj; |
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76 | while(getline(logfile,temp), temp.substr(0,3)!="---"){ |
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77 | std::stringstream ss; |
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78 | ss.str(temp); |
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79 | ss >> xpix >> ypix >> zpix >> fpix; |
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80 | Voxel vox(xpix,ypix,zpix,fpix); |
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81 | obj.addPixel(vox); |
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82 | } |
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83 | obj.setOffsets(cube->pars()); |
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84 | obj.calcParams(); |
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85 | if(obj.getSize()>0) cube->addObject(obj); |
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86 | getline(logfile,temp); // reads next line -- should be Detection #... |
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87 | if(temp.substr(0,4)=="----") getline(logfile,temp); |
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88 | } |
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89 | |
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90 | std::cout<<"Final object count = "<<cube->getNumObj()<<std::endl; |
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91 | |
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92 | cube->calcObjectWCSparams(); |
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93 | cube->setObjectFlags(); |
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94 | |
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95 | if((cube->getDimZ()>1) && (cube->getNumObj()>0)){ |
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96 | std::cout << "Plotting the individual spectra... " << std::flush; |
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97 | cube->outputSpectra(); |
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98 | std::cout << "done.\n"; |
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99 | } |
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100 | |
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101 | } |
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