[218] | 1 | #include <iostream> |
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| 2 | #include <fstream> |
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| 3 | #include <string> |
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| 4 | #include <cpgplot.h> |
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| 5 | #include <math.h> |
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| 6 | #include <unistd.h> |
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| 7 | #include <time.h> |
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| 8 | |
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| 9 | #include <duchamp.hh> |
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| 10 | #include <param.hh> |
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| 11 | #include <Detection/detection.hh> |
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| 12 | #include <Cubes/cubes.hh> |
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| 13 | #include <Utils/utils.hh> |
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| 14 | #include <ATrous/atrous.hh> |
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| 15 | |
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| 16 | using std::ifstream; |
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| 17 | using std::string; |
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| 18 | |
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| 19 | Filter reconFilter; |
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| 20 | |
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| 21 | int main(int argc, char * argv[]) |
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| 22 | { |
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| 23 | |
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| 24 | string paramFile,fitsfile,temp; |
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| 25 | Cube *cube = new Cube; |
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| 26 | |
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| 27 | if(cube->getopts(argc,argv)==FAILURE) return FAILURE; |
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| 28 | |
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| 29 | if(cube->pars().getImageFile().empty()){ |
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| 30 | std::stringstream errmsg; |
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| 31 | errmsg << "No input image has been given!\n" |
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| 32 | << "Use the imageFile parameter in " |
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| 33 | << paramFile << " to specify the FITS file.\nExiting...\n"; |
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| 34 | duchampError("Duchamp", errmsg.str()); |
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| 35 | return FAILURE; |
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| 36 | } |
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| 37 | |
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| 38 | if(cube->pars().getFlagSubsection()){ |
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| 39 | // make sure the subsection is OK. |
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| 40 | if(cube->pars().verifySubsection() == FAILURE){ |
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| 41 | duchampError("Duchamp", |
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| 42 | "Unable to use the subsection provided.\nExiting...\n"); |
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| 43 | return FAILURE; |
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| 44 | } |
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| 45 | } |
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| 46 | |
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| 47 | std::cout << "Opening image: " |
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| 48 | << cube->pars().getFullImageFile() << std::endl; |
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| 49 | |
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| 50 | if( cube->getCube() == FAILURE){ |
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| 51 | std::stringstream errmsg; |
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| 52 | errmsg << "Unable to open image file " |
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| 53 | << cube->pars().getFullImageFile() |
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| 54 | << "\nExiting...\n"; |
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| 55 | duchampError("Duchamp", errmsg.str()); |
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| 56 | return FAILURE; |
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| 57 | } |
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| 58 | else std::cout << "Opened successfully." << std::endl; |
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| 59 | |
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| 60 | // Read in any saved arrays that are in FITS files on disk. |
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| 61 | cube->readSavedArrays(); |
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| 62 | |
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| 63 | |
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| 64 | ifstream logfile(cube->pars().getLogFile().c_str()); |
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| 65 | |
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| 66 | if(!logfile.is_open()){ |
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| 67 | std::cerr << "\aUnable to open file " |
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| 68 | << cube->pars().getLogFile() << "\nExiting...\n"; |
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| 69 | return 1; |
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| 70 | } |
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| 71 | |
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| 72 | // read down until first Detection # line |
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| 73 | cube->setCubeStats(); |
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| 74 | std::cerr << "Reading from logfile : " << cube->pars().getLogFile() << "\n"; |
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| 75 | while(getline(logfile,temp), temp.substr(0,11)!="Detection #"){ } |
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| 76 | int xpix, ypix, zpix; |
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| 77 | float fpix; |
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| 78 | while(!logfile.eof()){ |
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| 79 | Detection obj; |
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| 80 | while(getline(logfile,temp), temp.substr(0,3)!="---"){ |
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| 81 | std::stringstream ss; |
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| 82 | ss.str(temp); |
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| 83 | ss >> xpix >> ypix >> zpix >> fpix; |
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| 84 | Voxel vox(xpix,ypix,zpix,fpix); |
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| 85 | obj.addPixel(vox); |
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| 86 | } |
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| 87 | obj.addOffsets(cube->pars()); |
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| 88 | obj.calcParams(); |
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| 89 | if(obj.getSize()>0) cube->addObject(obj); |
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| 90 | getline(logfile,temp); // reads next line -- should be Detection #... |
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| 91 | if(temp.substr(0,4)=="----") getline(logfile,temp); |
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| 92 | } |
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| 93 | |
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| 94 | std::cout<<"Final object count = "<<cube->getNumObj()<<std::endl; |
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| 95 | |
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| 96 | cube->calcObjectWCSparams(); |
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| 97 | cube->setObjectFlags(); |
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| 98 | |
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| 99 | if((cube->getDimZ()>1) && (cube->getNumObj()>0)){ |
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| 100 | std::cout << "Plotting the individual spectra... " << std::flush; |
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| 101 | cube->outputSpectra(); |
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| 102 | std::cout << "done.\n"; |
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| 103 | } |
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| 104 | |
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| 105 | } |
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