1 | // ----------------------------------------------------------------------- |
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2 | // duchamp.hh: Definitions for use with Duchamp |
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3 | // ----------------------------------------------------------------------- |
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4 | // Copyright (C) 2006, Matthew Whiting, ATNF |
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5 | // |
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6 | // This program is free software; you can redistribute it and/or modify it |
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7 | // under the terms of the GNU General Public License as published by the |
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8 | // Free Software Foundation; either version 2 of the License, or (at your |
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9 | // option) any later version. |
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10 | // |
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11 | // Duchamp is distributed in the hope that it will be useful, but WITHOUT |
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12 | // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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13 | // FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License |
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14 | // for more details. |
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15 | // |
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16 | // You should have received a copy of the GNU General Public License |
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17 | // along with Duchamp; if not, write to the Free Software Foundation, |
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18 | // Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA |
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19 | // |
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20 | // Correspondence concerning Duchamp may be directed to: |
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21 | // Internet email: Matthew.Whiting [at] atnf.csiro.au |
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22 | // Postal address: Dr. Matthew Whiting |
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23 | // Australia Telescope National Facility, CSIRO |
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24 | // PO Box 76 |
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25 | // Epping NSW 1710 |
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26 | // AUSTRALIA |
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27 | // ----------------------------------------------------------------------- |
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28 | #ifndef DUCHAMP_HH |
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29 | #define DUCHAMP_HH |
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30 | |
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31 | #include <iostream> |
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32 | #include <stdexcept> |
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33 | #include <string> |
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34 | #include <sstream> |
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35 | |
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36 | // need to undef these in case other packages have them defined. |
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37 | #undef PACKAGE_BUGREPORT |
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38 | #undef PACKAGE_NAME |
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39 | #undef PACKAGE_STRING |
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40 | #undef PACKAGE_TARNAME |
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41 | #undef PACKAGE_VERSION |
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42 | #undef HAVE_PGPLOT |
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43 | #include <duchamp/config.h> |
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44 | |
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45 | #ifdef HAVE_PGPLOT |
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46 | #include <duchamp/Utils/mycpgplot.hh> |
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47 | #endif |
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48 | |
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49 | /// The primary namespace for all functionality directly related to Duchamp |
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50 | namespace duchamp |
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51 | { |
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52 | |
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53 | /// @brief How to convey whether a function has worked |
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54 | enum OUTCOME {SUCCESS=0, FAILURE}; |
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55 | |
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56 | /// Usage message for command line help. |
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57 | const std::string ERR_USAGE_MSG = |
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58 | "Usage: Duchamp [OPTION] [FILE]\n\ |
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59 | Duchamp is an object finder for spectral-line FITS cubes.\n\ |
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60 | \n\ |
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61 | -p FILE Read in parameters from FILE, including FITS image location.\n\ |
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62 | -f FILE Use default parameters with imageFile=FILE\n\ |
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63 | -x Do not use X-windows PGPLOT output\n\ |
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64 | (equivalent to setting flagXOutput=false -- overrides the parameter file)\n\n\ |
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65 | -v Return version number and exit\n\ |
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66 | -h Display this help information and exit\n"; |
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67 | |
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68 | /// Usage message for command line help for Selavy. |
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69 | const std::string SELAVY_ERR_USAGE_MSG = |
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70 | "Usage: Selavy [OPTION] [FILE]\n\ |
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71 | Selavy re-analyses and re-plots objects found by Duchamp.\n\ |
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72 | \n\ |
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73 | -p FILE Read in parameters from FILE, including FITS image location.\n\ |
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74 | -f FILE Use default parameters with imageFile=FILE\n\ |
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75 | -x Do not use X-windows PGPLOT output\n\ |
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76 | (equivalent to setting flagXOutput=false -- overrides the parameter file)\n\n\ |
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77 | -v Return version number and exit\n\ |
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78 | -h Display this help information and exit\n"; |
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79 | |
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80 | /// Shorter Usage message for command line help. |
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81 | const std::string ERR_USAGE_MSG_SHORT="Usage: Duchamp -p [parameter file]\n"; |
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82 | |
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83 | /// The program name. (Duchamp) |
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84 | const std::string PROGNAME = PACKAGE_NAME; |
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85 | |
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86 | /// The program version |
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87 | const std::string VERSION = PACKAGE_VERSION; |
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88 | |
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89 | /// Define the duchamp exception class. |
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90 | class DuchampError: public std::runtime_error |
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91 | { |
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92 | public: |
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93 | /// Constructor taking a message |
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94 | explicit DuchampError(const std::string& message); |
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95 | /// empty destructor |
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96 | virtual ~DuchampError() throw(); |
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97 | }; |
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98 | |
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99 | // Macro to handle warnings, specifying the origin of the warning and taking a streamed input |
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100 | #define DUCHAMPWARN(origin,stream) \ |
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101 | { \ |
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102 | do { \ |
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103 | std::ostringstream oss; \ |
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104 | oss << stream; \ |
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105 | std::cerr << "WARNING <" << origin << "> : " << oss.str()<<"\n"; \ |
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106 | } while(0); \ |
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107 | } |
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108 | |
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109 | // Macro to handle errors, with origin and streamed input. No exception is thrown (use DUCHAMPTHROW instead) |
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110 | #define DUCHAMPERROR(origin,stream) \ |
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111 | { \ |
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112 | do { \ |
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113 | std::ostringstream oss; \ |
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114 | oss << stream; \ |
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115 | std::cerr << "ERROR <" << origin << "> : " << oss.str() << "\n"; \ |
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116 | } while(0); \ |
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117 | } |
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118 | |
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119 | #define DUCHAMPTHROW(origin,stream) \ |
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120 | { \ |
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121 | DUCHAMPERROR(origin,"\a"<<stream); \ |
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122 | std::ostringstream error; \ |
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123 | error << stream; \ |
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124 | throw DuchampError(error.str()); \ |
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125 | } |
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126 | |
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127 | /// The spectral type that we want the wcsprm structs to be in. |
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128 | const char duchampVelocityType[9] = "VOPT-F2W"; |
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129 | //const char duchampVelocityType[9] = "VELO-F2V"; |
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130 | /// The spectral type that we want the wcsprm structs to be in when no velocity info is present. |
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131 | const char duchampFrequencyType[9] = "FREQ "; |
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132 | |
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133 | /// Descriptions of the various spectral axis types |
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134 | enum TYPEDESC {FREQUENCY=0,VELOCITY,WAVELENGTH}; |
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135 | /// Human-readable descriptions of the various spectral axis types |
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136 | const std::string duchampSpectralDescription[3]= |
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137 | {"Frequency", "Velocity", "Wavelength"}; |
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138 | |
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139 | // The following are the FITS Header Keywords corresponding to the |
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140 | // parameters related to the atrous reconstruction. |
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141 | |
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142 | /// FITS header keyword for min atrous scale |
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143 | const std::string keyword_scaleMin = "DU_MINSC"; |
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144 | /// FITS header keyword for S/N used in atrous reconstruction |
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145 | const std::string keyword_snrRecon = "DU_ATCUT"; |
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146 | /// FITS header keyword for number of dimensions used in atrous reconstruction |
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147 | const std::string keyword_reconDim = "DU_ATDIM"; |
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148 | /// FITS header keyword for the code number of the filter used in atrous reconstruction |
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149 | const std::string keyword_filterCode = "DU_FILTR"; |
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150 | /// FITS header keyword: does this file hold the reconstructed array or the residual? |
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151 | const std::string keyword_ReconResid = "DU_RECON"; |
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152 | /// FITS header keyword: type of smoothing done. |
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153 | const std::string keyword_smoothtype = "DU_SMTYP"; |
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154 | /// FITS header keyword for the gaussian kernel major axis FWHM |
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155 | const std::string keyword_kernmaj = "DU_KMAJ"; |
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156 | /// FITS header keyword for the gaussian kernel minor axis FWHM |
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157 | const std::string keyword_kernmin = "DU_KMIN"; |
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158 | /// FITS header keyword for the gaussian kernel position angle |
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159 | const std::string keyword_kernpa = "DU_KPA"; |
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160 | /// FITS header keyword for the Hanning filter width |
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161 | const std::string keyword_hanningwidth = "DU_WHANN"; |
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162 | /// FITS header keyword for the image subsection used |
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163 | const std::string keyword_subsection = "DU_IMSUB"; |
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164 | |
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165 | // And these are the comments corresponding to the relevant keywords |
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166 | /// FITS header comment for DU_MINSC keyword |
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167 | const std::string comment_scaleMin = "Duchamp parameter scaleMin"; |
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168 | /// FITS header comment for DU_ATCUT keyword |
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169 | const std::string comment_snrRecon = "Duchamp parameter snrRecon"; |
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170 | /// FITS header comment for DU_ATDIM keyword |
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171 | const std::string comment_reconDim = "Duchamp parameter reconDim"; |
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172 | /// FITS header comment for DU_FILTR keyword |
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173 | const std::string comment_filterCode = "Duchamp parameter filterCode"; |
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174 | /// FITS header comment for DU_RECON keyword |
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175 | const std::string comment_ReconResid = "Is this the reconstruction or residual?"; |
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176 | /// FITS header comment for DU_SMTYP keyword |
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177 | const std::string comment_smoothtype = "Type of smoothing done"; |
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178 | /// FITS header comment for DU_KMAJ keyword |
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179 | const std::string comment_kernmaj = "Duchamp parameter kernMaj"; |
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180 | /// FITS header comment for DU_KMIN keyword |
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181 | const std::string comment_kernmin = "Duchamp parameter kernMin"; |
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182 | /// FITS header comment for DU_KPA keyword |
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183 | const std::string comment_kernpa = "Duchamp parameter kernPA"; |
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184 | /// FITS header comment for DU_WHANN keyword |
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185 | const std::string comment_hanningwidth = "Duchamp parameter hanningWidth"; |
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186 | /// FITS header comment for DU_IMSUB keyword |
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187 | const std::string comment_subsection = "Subsection of the original image"; |
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188 | |
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189 | // Descriptive Headers: for the reconstruction case |
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190 | const std::string header_reconHistory1 = |
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191 | "Reconstructed with a trous wavelet technique"; |
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192 | const std::string header_reconHistory2 = |
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193 | "Reconstruction by " + PROGNAME + " v." + VERSION; |
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194 | const std::string header_reconHistory_input = |
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195 | "Original (input) image used by " + PROGNAME + " follows"; |
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196 | const std::string header_reconSubsection_comment = |
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197 | "A subsection of the original was reconstructed by " + PROGNAME; |
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198 | const std::string header_atrous_comment = |
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199 | "The following are the Duchamp parameters used in reconstruction"; |
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200 | |
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201 | // Descriptive Headers: for the Smoothing case |
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202 | const std::string header_smoothHistory = |
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203 | "Smoothed by " + PROGNAME + " v." + VERSION; |
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204 | const std::string header_smoothHistory_input = |
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205 | "Original (input) image used by " + PROGNAME + " follows"; |
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206 | const std::string header_smoothSubsection_comment = |
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207 | "A subsection of the original was smoothed by " + PROGNAME; |
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208 | const std::string header_smoothSpatial = "Spatial, gaussian kernel"; |
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209 | const std::string header_smoothSpectral= "Spectral, hanning filter"; |
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210 | |
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211 | // Descriptive Headers: for the output Mask image |
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212 | const std::string header_maskHistory = |
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213 | "Results of searching by " + PROGNAME + " v." + VERSION; |
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214 | const std::string header_maskHistory_input = |
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215 | "Input image used by " + PROGNAME + " follows"; |
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216 | const std::string header_maskSubsection_comment = |
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217 | "A subsection of the original was searched by " + PROGNAME; |
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218 | |
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219 | // Descriptive Headers: for the output Moment-0 image |
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220 | const std::string header_moment0History = |
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221 | "Moment-0 map from searching by " + PROGNAME + " v." + VERSION; |
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222 | const std::string header_moment0History_input = |
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223 | "Input image used by " + PROGNAME + " follows"; |
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224 | const std::string header_moment0Subsection_comment = |
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225 | "A subsection of the original was searched by " + PROGNAME; |
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226 | |
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227 | // Default colour used for the annotation files |
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228 | const std::string annotationColour = "RED"; |
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229 | |
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230 | } |
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231 | |
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232 | #ifdef HAVE_PGPLOT |
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233 | namespace duchamp |
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234 | { |
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235 | |
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236 | // Colours used in graphical output |
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237 | /// The colour for the Blank edges |
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238 | const int DUCHAMP_BLANK_EDGE_COLOUR = mycpgplot::MAGENTA; |
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239 | /// The colour for the edge of the cube |
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240 | const int DUCHAMP_CUBE_EDGE_COLOUR = mycpgplot::YELLOW; |
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241 | /// The colour for the reconstructed spectra |
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242 | const int DUCHAMP_RECON_SPECTRA_COLOUR = mycpgplot::RED; |
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243 | /// The colour for the baseline spectra |
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244 | const int DUCHAMP_BASELINE_SPECTRA_COLOUR = mycpgplot::YELLOW; |
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245 | /// The colour for the object outline |
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246 | const int DUCHAMP_OBJECT_OUTLINE_COLOUR = mycpgplot::BLUE; |
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247 | /// The colour for the Milky-way region spectral boundaries |
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248 | const int DUCHAMP_MILKY_WAY_COLOUR = mycpgplot::DARKGREEN; |
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249 | /// The colour for the tick marks in the image cutouts |
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250 | const int DUCHAMP_TICKMARK_COLOUR = mycpgplot::RED; |
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251 | /// The colour for the text identifying objects on the maps |
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252 | const int DUCHAMP_ID_TEXT_COLOUR = mycpgplot::RED; |
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253 | /// The colour for the WCS axes on the maps |
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254 | const int DUCHAMP_WCS_AXIS_COLOUR = mycpgplot::WCSGREEN; |
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255 | |
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256 | } |
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257 | |
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258 | #else |
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259 | namespace duchamp |
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260 | { |
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261 | /// The colour for the text identifying objects on the maps |
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262 | const int DUCHAMP_ID_TEXT_COLOUR = 2; |
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263 | /// The colour for the WCS axes on the maps |
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264 | const int DUCHAMP_WCS_AXIS_COLOUR = 3; |
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265 | |
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266 | } |
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267 | |
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268 | #endif |
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269 | |
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270 | |
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271 | #endif |
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