[300] | 1 | // ----------------------------------------------------------------------- |
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| 2 | // columns.cc: Define a set of columns for Duchamp output. |
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| 3 | // ----------------------------------------------------------------------- |
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| 4 | // Copyright (C) 2006, Matthew Whiting, ATNF |
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| 5 | // |
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| 6 | // This program is free software; you can redistribute it and/or modify it |
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| 7 | // under the terms of the GNU General Public License as published by the |
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| 8 | // Free Software Foundation; either version 2 of the License, or (at your |
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| 9 | // option) any later version. |
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| 10 | // |
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| 11 | // Duchamp is distributed in the hope that it will be useful, but WITHOUT |
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| 12 | // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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| 13 | // FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License |
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| 14 | // for more details. |
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| 15 | // |
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| 16 | // You should have received a copy of the GNU General Public License |
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| 17 | // along with Duchamp; if not, write to the Free Software Foundation, |
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| 18 | // Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA |
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| 19 | // |
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| 20 | // Correspondence concerning Duchamp may be directed to: |
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| 21 | // Internet email: Matthew.Whiting [at] atnf.csiro.au |
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| 22 | // Postal address: Dr. Matthew Whiting |
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| 23 | // Australia Telescope National Facility, CSIRO |
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| 24 | // PO Box 76 |
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| 25 | // Epping NSW 1710 |
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| 26 | // AUSTRALIA |
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| 27 | // ----------------------------------------------------------------------- |
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[144] | 28 | #include <iostream> |
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| 29 | #include <sstream> |
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| 30 | |
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[155] | 31 | #include <math.h> |
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[393] | 32 | #include <duchamp/duchamp.hh> |
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| 33 | #include <duchamp/fitsHeader.hh> |
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[93] | 34 | #include <vector> |
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| 35 | #include <string> |
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[393] | 36 | #include <duchamp/Detection/detection.hh> |
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[1061] | 37 | #include <duchamp/Outputs/columns.hh> |
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[93] | 38 | |
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[378] | 39 | namespace duchamp |
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[232] | 40 | { |
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[221] | 41 | |
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[1061] | 42 | namespace Catalogues |
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[272] | 43 | { |
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[221] | 44 | |
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[439] | 45 | |
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[1061] | 46 | Column::Column() |
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[378] | 47 | { |
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[528] | 48 | /// @brief Set the default values for the parameters. |
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[1061] | 49 | this->itsWidth=1; |
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| 50 | this->itsPrecision=0; |
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| 51 | this->itsName=" "; |
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| 52 | this->itsUnits=" "; |
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| 53 | this->itsType=""; |
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| 54 | this->itsUCD = ""; |
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| 55 | this->itsDatatype = ""; |
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| 56 | this->itsExtraInfo=""; |
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| 57 | this->itsColID=""; |
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[419] | 58 | } |
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[232] | 59 | |
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[1061] | 60 | Column::Column(std::string type) |
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| 61 | { |
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| 62 | operator=(defaultColumn(type)); |
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| 63 | } |
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[365] | 64 | |
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[1061] | 65 | Column::Column(const Column& c) |
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[378] | 66 | { |
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| 67 | operator=(c); |
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| 68 | } |
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[365] | 69 | |
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[1061] | 70 | Column& Column::operator=(const Column& c) |
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[378] | 71 | { |
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| 72 | if(this==&c) return *this; |
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[1061] | 73 | this->itsWidth = c.itsWidth; |
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| 74 | this->itsPrecision = c.itsPrecision; |
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| 75 | this->itsName = c.itsName; |
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| 76 | this->itsUnits = c.itsUnits; |
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| 77 | this->itsUCD = c.itsUCD; |
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| 78 | this->itsDatatype = c.itsDatatype; |
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| 79 | this->itsExtraInfo = c.itsExtraInfo; |
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| 80 | this->itsColID = c.itsColID; |
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| 81 | this->itsType = c.itsType; |
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[378] | 82 | return *this; |
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[232] | 83 | } |
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[378] | 84 | |
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[1064] | 85 | Column::Column(std::string type, std::string name, std::string units, int width, int prec, std::string ucd, std::string datatype, std::string colID, std::string extraInfo): |
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[1067] | 86 | itsType(type), itsName(name), itsUnits(units), itsWidth(width), itsPrecision(prec), itsUCD(ucd), itsDatatype(datatype), itsColID(colID), itsExtraInfo(extraInfo) |
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[540] | 87 | { |
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| 88 | /// A generic constructor designed to make a Column other than |
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| 89 | /// the predefined ones listed in the Column namespace |
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| 90 | /// \param name The title of the column |
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| 91 | /// \param units What units the column takes |
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| 92 | /// \param width The starting width |
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| 93 | /// \param prec The starting precision |
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[1066] | 94 | /// \param ucd The UCD relating to the quantity (VOTable use only) |
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| 95 | /// \param datatype The datatype (float/char/int/etc) of the quantity (VOTable) |
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| 96 | /// \param colID The column ID string used in the FIELD entry of a VOTable |
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| 97 | /// \param extraInfo Other information used in the VOTable (eg. a reference to a COOSYS) |
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[1061] | 98 | } |
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[540] | 99 | |
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[378] | 100 | //------------------------------------------------------------ |
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[540] | 101 | |
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[1061] | 102 | void Column::changePrec(int p) |
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[540] | 103 | { |
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| 104 | /// A direct way to alter the precision without having to use |
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[1061] | 105 | /// Column::upPrec(). If the precision increases, the width will |
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[540] | 106 | /// increase by the same amount. If it decreases, no change is |
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| 107 | /// made to the width. |
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| 108 | /// \param p The new precision value. |
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| 109 | |
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[1061] | 110 | if(p > this->itsPrecision) this->itsWidth += (p-this->itsPrecision); |
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| 111 | this->itsPrecision = p; |
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[540] | 112 | |
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| 113 | } |
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[1217] | 114 | |
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| 115 | void Column::checkPrec(double val) |
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| 116 | { |
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| 117 | /// Checks a decimal value to see if it is in -1<val<1. If |
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| 118 | /// so, we need sufficient precision to represent at least |
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| 119 | /// one significant figure. |
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| 120 | if((fabs(val)<1.)){ |
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| 121 | int impliedPrec = int(fabs(log10(val))+1); |
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| 122 | for(int i=this->itsPrecision;i<=impliedPrec;i++) this->upPrec(); |
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| 123 | } |
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| 124 | } |
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| 125 | |
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| 126 | void Column::checkWidth(int width) |
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| 127 | { |
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| 128 | /// Three checks on the width, looking at the name, the |
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| 129 | /// units string, and then some minimum width. This can be |
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| 130 | /// obtained from the other check() functions that work |
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| 131 | /// from various value types. |
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| 132 | |
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| 133 | for(int i=this->itsWidth;i<=width;i++) this->widen();// +1 for the space |
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| 134 | for(int i=this->itsWidth;i<=int(this->itsName.size());i++) this->widen(); // +1 for the space |
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| 135 | for(int i=this->itsWidth;i<=int(this->itsUnits.size());i++) this->widen(); // +1 for the space |
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| 136 | |
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| 137 | } |
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| 138 | |
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[540] | 139 | //------------------------------------------------------------ |
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[1061] | 140 | void Column::printTitle(std::ostream &stream) |
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[378] | 141 | { |
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[1061] | 142 | stream << std::setw(this->itsWidth) |
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[378] | 143 | << std::setfill(' ') |
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[1061] | 144 | << this->itsName; |
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[378] | 145 | } |
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[93] | 146 | |
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[1061] | 147 | void Column::printUnits(std::ostream &stream) |
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[378] | 148 | { |
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[1061] | 149 | stream << std::setw(this->itsWidth) |
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[378] | 150 | << std::setfill(' ') |
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[1061] | 151 | << this->itsUnits; |
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[378] | 152 | } |
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[272] | 153 | |
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[1061] | 154 | void Column::printDash (std::ostream &stream) |
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[378] | 155 | { |
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[1061] | 156 | stream << std::setw(this->itsWidth) |
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[378] | 157 | << std::setfill('-') |
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| 158 | << "" |
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| 159 | << std::setfill(' '); |
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| 160 | } |
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[232] | 161 | |
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[1061] | 162 | void Column::printBlank(std::ostream &stream) |
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[378] | 163 | { |
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[1061] | 164 | stream << std::setw(this->itsWidth) |
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[378] | 165 | << std::setfill(' ') |
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| 166 | << ""; |
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| 167 | } |
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[272] | 168 | |
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[1061] | 169 | template <class T> void Column::printEntry(std::ostream &stream, T value) |
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[378] | 170 | { |
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[528] | 171 | /// \param stream Where the printing is done. |
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| 172 | /// \param value The value to be printed. |
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| 173 | |
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[1061] | 174 | stream << std::setprecision(this->itsPrecision) |
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| 175 | << std::setw(this->itsWidth) |
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[378] | 176 | << std::setfill(' ') |
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| 177 | << value; |
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| 178 | } |
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[1061] | 179 | template void Column::printEntry<int>(std::ostream &stream, int value); |
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| 180 | template void Column::printEntry<long>(std::ostream &stream, long value); |
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| 181 | template void Column::printEntry<unsigned int>(std::ostream &stream, unsigned int value); |
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| 182 | template void Column::printEntry<unsigned long>(std::ostream &stream, unsigned long value); |
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| 183 | template void Column::printEntry<float>(std::ostream &stream, float value); |
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| 184 | template void Column::printEntry<double>(std::ostream &stream, double value); |
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| 185 | template void Column::printEntry<std::string>(std::ostream &stream, std::string value); |
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[272] | 186 | |
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[440] | 187 | |
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[1061] | 188 | bool Column::doCol(DESTINATION tableType, bool flagFint) |
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[440] | 189 | { |
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[1066] | 190 | /// @details Determines whether a given column is used for a |
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| 191 | /// given table type, based on the Column::type string. |
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[1047] | 192 | /// \param tableType The type of table: one of FILE, SCREEN, LOG, VOTABLE. |
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[528] | 193 | /// \param flagFint Whether to use FINT (true) or FTOT |
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| 194 | /// (false). This defaults to true, so need not be given. It only |
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| 195 | /// applies to the screen and votable cases -- both are written for the |
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| 196 | /// results file case. |
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| 197 | /// \return True if column is used for given table type. False |
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| 198 | /// otherwise. False if tableType not one of four listed. |
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[440] | 199 | |
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[1066] | 200 | |
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[1273] | 201 | const size_t sizeFileList=43; |
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| 202 | std::string FileList[sizeFileList]={"NUM","NAME","X","Y","Z","RA","DEC","RAJD","DECJD","VEL","MAJ","MIN","PA","WRA","WDEC", |
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| 203 | "W50","W20","WVEL","FINT","FINTERR","FTOT","FTOTERR","FPEAK","SNRPEAK", |
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| 204 | "X1","X2","Y1","Y2","Z1","Z2","NVOX","NUMCH","SPATSIZE","FLAG","XAV","YAV", |
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[1192] | 205 | "ZAV","XCENT","YCENT","ZCENT","XPEAK","YPEAK","ZPEAK"}; |
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[1273] | 206 | const size_t sizeScreenList=24; |
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[1192] | 207 | std::string ScreenList[sizeScreenList]={"NUM","NAME","X","Y","Z","RA","DEC","VEL","MAJ","MIN","PA", |
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| 208 | "W50","FPEAK","SNRPEAK","X1","X2","Y1", |
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[1273] | 209 | "Y2","Z1","Z2","NVOX","NUMCH","SPATSIZE","FLAG"}; |
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[1192] | 210 | const size_t sizeLogList=16; |
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| 211 | std::string LogList[sizeLogList]={"NUM","X","Y","Z","FTOT","FPEAK","SNRPEAK", |
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[1273] | 212 | "X1","X2","Y1","Y2","Z1","Z2","NVOX","NUMCH","SPATSIZE"}; |
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| 213 | // const size_t sizeVOList=23; |
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| 214 | // std::string VOList[sizeVOList]={"NUM","NAME","RAJD","DECJD","VEL","MAJ","MIN","PA", |
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| 215 | // "W50","W20","WVEL","FPEAK","SNRPEAK","FLAG","XAV","YAV", |
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| 216 | // "ZAV","XCENT","YCENT","ZCENT","XPEAK","YPEAK","ZPEAK"}; |
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[1061] | 217 | |
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| 218 | bool doIt=false; |
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| 219 | if(tableType == FILE){ |
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[1192] | 220 | for(size_t i=0;i<sizeFileList && !doIt;i++) doIt = doIt || (this->itsType==FileList[i]); |
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[1061] | 221 | } |
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[1047] | 222 | else if(tableType == SCREEN){ |
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[1061] | 223 | if(this->itsType=="FTOT") doIt = !flagFint; |
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| 224 | else if(this->itsType == "FINT") doIt = flagFint; |
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[1192] | 225 | else for(size_t i=0;i<sizeScreenList && !doIt;i++) doIt = doIt || (this->itsType==ScreenList[i]); |
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[440] | 226 | } |
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[1061] | 227 | else if(tableType == LOG){ |
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[1192] | 228 | for(size_t i=0;i<sizeLogList && !doIt;i++) doIt = doIt || (this->itsType==LogList[i]); |
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[1061] | 229 | } |
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[1047] | 230 | else if(tableType == VOTABLE){ |
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[1153] | 231 | if(this->itsType=="FTOT" || this->itsType=="FTOTERR") doIt = !flagFint; |
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| 232 | else if(this->itsType == "FINT" || this->itsType=="FINTERR") doIt = flagFint; |
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[1273] | 233 | // else for(size_t i=0;i<sizeVOList && !doIt;i++) doIt = doIt || (this->itsType==VOList[i]); |
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| 234 | else{ |
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| 235 | for(size_t i=0;i<sizeFileList && !doIt;i++){ |
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| 236 | if(FileList[i]!="RA" && FileList[i]!="DEC") |
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| 237 | doIt = doIt || (this->itsType==FileList[i]); |
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| 238 | } |
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| 239 | } |
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[440] | 240 | } |
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[1273] | 241 | |
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[1061] | 242 | return doIt; |
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| 243 | |
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[440] | 244 | } |
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| 245 | |
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[1061] | 246 | Column defaultColumn(std::string type) |
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| 247 | { |
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| 248 | // type|name|units|width|prec|ucd|datatype|extraInfo |
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[1137] | 249 | if (type == "NUM") return Column(type,"ObjID","",6,0,"meta.id","int","col_objnum",""); |
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[1064] | 250 | else if(type=="NAME") return Column(type,"Name","",8,0,"meta.id;meta.main","char","col_name",""); |
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| 251 | else if(type=="X") return Column(type,"X","",6,prXYZ,"pos.cartesian.x","float","col_x",""); |
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| 252 | else if(type=="Y") return Column(type,"Y","",6,prXYZ,"pos.cartesian.y","float","col_y",""); |
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| 253 | else if(type=="Z") return Column(type,"Z","",6,prXYZ,"pos.cartesian.z","float","col_z",""); |
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| 254 | else if(type=="RA") return Column(type,"RA","",11,0,"","char","col_ra",coordRef); |
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| 255 | else if(type=="DEC") return Column(type,"DEC","",10,0,"","char","col_dec",coordRef); |
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| 256 | else if(type=="RAJD") return Column(type,"RAJD","[deg]",11,prPOS,"","float","col_rajd",coordRef); |
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| 257 | else if(type=="DECJD") return Column(type,"DECJD","[deg]",11,prPOS,"","float","col_decjd",coordRef); |
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| 258 | else if(type=="VEL") return Column(type,"VEL","",7,prVEL,"","float","col_vel",""); |
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[1131] | 259 | else if(type=="MAJ") return Column(type,"MAJ","[deg]",6,prWPOS,"phys.angSize.smajAxis","float","col_maj",coordRef); |
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| 260 | else if(type=="MIN") return Column(type,"MIN","[deg]",6,prWPOS,"phys.angSize.sminAxis","float","col_min",coordRef); |
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| 261 | else if(type=="PA") return Column(type,"PA","[deg]",7,prWPOS,"pos.posAng;phys.angSize","float","col_pa",coordRef); |
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[1064] | 262 | else if(type=="WRA") return Column(type,"w_RA","[arcmin]",9,prWPOS,"","float","col_wra",coordRef); |
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| 263 | else if(type=="WDEC") return Column(type,"w_DEC","[arcmin]",9,prWPOS,"","float","col_wdec",coordRef); |
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| 264 | else if(type=="W50") return Column(type,"w_50","",7,prVEL,"","float","col_w50",""); |
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| 265 | else if(type=="W20") return Column(type,"w_20","",7,prVEL,"","float","col_w20",""); |
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| 266 | else if(type=="WVEL") return Column(type,"w_VEL","",7,prVEL,"","float","col_wvel",""); |
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[1101] | 267 | else if(type=="FINT") return Column(type,"F_int","",10,prFLUX,"phot.flux.density.integrated","float","col_fint",""); |
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[1152] | 268 | else if(type=="FINTERR") return Column(type,"eF_int","",10,prFLUX,"phot.flux.density.integrated;stat.err","float","col_efint",""); |
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[1101] | 269 | else if(type=="FTOT") return Column(type,"F_tot","",10,prFLUX,"phot.flux.density","float","col_ftot",""); |
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[1153] | 270 | else if(type=="FTOTERR") return Column(type,"eF_tot","",10,prFLUX,"phot.flux.density;stat.err","float","col_eftot",""); |
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[1101] | 271 | else if(type=="FPEAK") return Column(type,"F_peak","",9,prFLUX,"phot.flux;stat.max","float","col_fpeak",""); |
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| 272 | else if(type=="SNRPEAK") return Column(type,"S/Nmax","",7,prSNR,"stat.snr;phot.flux","float","col_snrmax",""); |
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[1064] | 273 | else if(type=="X1") return Column(type,"X1","",4,0,"pos.cartesian.x;stat.min","int","col_x1",""); |
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| 274 | else if(type=="Y1") return Column(type,"Y1","",4,0,"pos.cartesian.y;stat.min","int","col_y1",""); |
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| 275 | else if(type=="Z1") return Column(type,"Z1","",4,0,"pos.cartesian.z;stat.min","int","col_z1",""); |
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| 276 | else if(type=="X2") return Column(type,"X2","",4,0,"pos.cartesian.x;stat.max","int","col_x2",""); |
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| 277 | else if(type=="Y2") return Column(type,"Y2","",4,0,"pos.cartesian.y;stat.max","int","col_y2",""); |
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| 278 | else if(type=="Z2") return Column(type,"Z2","",4,0,"pos.cartesian.z;stat.max","int","col_z2",""); |
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[1273] | 279 | else if(type=="NVOX") return Column(type,"Nvoxel","",6,0,"phys.size;instr.pixel;em.bin","int","col_nvox",""); |
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| 280 | else if(type=="NUMCH") return Column(type,"Nchan","",6,0,"spect.line.width.full;em.bin","int","col_nch",""); |
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| 281 | else if(type=="SPATSIZE") return Column(type,"Nspatpix","",8,0,"phys.angArea;instr.pixel","int","col_spsize",""); |
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[1064] | 282 | else if(type=="FLAG") return Column(type,"Flag","",5,0,"meta.code.qual","char","col_flag",""); |
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[1101] | 283 | else if(type=="XAV") return Column(type,"X_av","",6,prXYZ,"pos.cartesian.x;stat.mean","float","col_xav",""); |
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| 284 | else if(type=="YAV") return Column(type,"Y_av","",6,prXYZ,"pos.cartesian.y;stat.mean","float","col_yav",""); |
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| 285 | else if(type=="ZAV") return Column(type,"Z_av","",6,prXYZ,"pos.cartesian.z;stat.mean","float","col_zav",""); |
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| 286 | else if(type=="XCENT") return Column(type,"X_cent","",7,prXYZ,"pos.cartesian.x;stat.centroid","float","col_xcent",""); |
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| 287 | else if(type=="YCENT") return Column(type,"Y_cent","",7,prXYZ,"pos.cartesian.y;stat.centroid","float","col_ycent",""); |
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| 288 | else if(type=="ZCENT") return Column(type,"Z_cent","",7,prXYZ,"pos.cartesian.z;stat.centroid","float","col_zcent",""); |
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| 289 | else if(type=="XPEAK") return Column(type,"X_peak","",7,prXYZ,"pos.cartesian.x;phot.flux;stat.max","int","col_xpeak",""); |
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| 290 | else if(type=="YPEAK") return Column(type,"Y_peak","",7,prXYZ,"pos.cartesian.y;phot.flux;stat.max","int","col_ypeak",""); |
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| 291 | else if(type=="ZPEAK") return Column(type,"Z_peak","",7,prXYZ,"pos.cartesian.z;phot.flux;stat.max","int","col_zpeak",""); |
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[1061] | 292 | else { |
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| 293 | Column col; |
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| 294 | col.setType(type); |
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| 295 | return col; |
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| 296 | } |
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[221] | 297 | |
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[1061] | 298 | } |
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| 299 | |
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[1064] | 300 | CatalogueSpecification getFullColSet(std::vector<Detection> &objectList, FitsHeader &head) |
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[378] | 301 | { |
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[1064] | 302 | /// @details A function that returns a catalogue specification |
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| 303 | /// containing information on the columns necessary for output |
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| 304 | /// to the results file: |
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| 305 | /// Obj#,NAME,X,Y,Z,RA,DEC,VEL,w_RA,w_DEC,w_VEL,F_tot,F_int,F_peak, |
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[1273] | 306 | /// X1,X2,Y1,Y2,Z1,Z2,Nvox,Flag, |
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[1064] | 307 | /// XAV,YAV,ZAV,XCENT,YCENT,ZCENT,XPEAK,YPEAK,ZPEAK |
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[528] | 308 | /// |
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| 309 | /// Each object in the provided objectList is checked to see if it |
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| 310 | /// requires any column to be widened, or for that column to have |
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| 311 | /// its precision increased. |
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| 312 | /// |
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| 313 | /// Both Ftot and Fint are provided -- it is up to the calling |
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| 314 | /// function to determine which to use. |
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| 315 | /// |
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| 316 | /// \param objectList A std::vector list of Detection objects that the |
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| 317 | /// columns need to fit. |
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| 318 | /// \param head The FitsHeader object defining the World Coordinate |
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| 319 | /// System. |
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[1064] | 320 | /// \return A CatalogueSpecification |
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[93] | 321 | |
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[1064] | 322 | CatalogueSpecification newset; |
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[93] | 323 | |
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[438] | 324 | // desired precisions for fluxes, velocities and SNR value |
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[461] | 325 | int precVel,precFlux,precSNR; |
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| 326 | if(objectList.size()>0){ |
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| 327 | precVel=objectList[0].getVelPrec(); |
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| 328 | precFlux=objectList[0].getFpeakPrec(); // same as FintPrec at this point. |
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[438] | 329 | precSNR=objectList[0].getSNRPrec(); |
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[461] | 330 | } |
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| 331 | else { |
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| 332 | precVel = prVEL; |
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| 333 | precFlux = prFLUX; |
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| 334 | precSNR = prSNR; |
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| 335 | } |
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[438] | 336 | |
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[378] | 337 | // set up the default columns |
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[1064] | 338 | newset.addColumn( Column("NUM") ); |
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| 339 | newset.addColumn( Column("NAME") ); |
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| 340 | newset.addColumn( Column("X") ); |
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| 341 | newset.addColumn( Column("Y") ); |
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| 342 | newset.addColumn( Column("Z") ); |
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| 343 | newset.addColumn( Column("RA") ); |
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| 344 | newset.addColumn( Column("DEC") ); |
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| 345 | newset.addColumn( Column("RAJD") ); |
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| 346 | newset.addColumn( Column("DECJD") ); |
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| 347 | newset.addColumn( Column("VEL") ); |
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[1131] | 348 | newset.addColumn( Column("MAJ") ); |
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| 349 | newset.addColumn( Column("MIN") ); |
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| 350 | newset.addColumn( Column("PA") ); |
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[1064] | 351 | newset.addColumn( Column("WRA") ); |
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| 352 | newset.addColumn( Column("WDEC") ); |
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| 353 | newset.addColumn( Column("W50") ); |
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| 354 | newset.addColumn( Column("W20") ); |
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| 355 | newset.addColumn( Column("WVEL") ); |
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| 356 | newset.addColumn( Column("FINT") ); |
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[1152] | 357 | newset.addColumn( Column("FINTERR") ); |
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[1064] | 358 | newset.addColumn( Column("FTOT") ); |
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[1153] | 359 | newset.addColumn( Column("FTOTERR") ); |
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[1064] | 360 | newset.addColumn( Column("FPEAK") ); |
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| 361 | newset.addColumn( Column("SNRPEAK") ); |
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| 362 | newset.addColumn( Column("X1") ); |
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| 363 | newset.addColumn( Column("X2") ); |
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| 364 | newset.addColumn( Column("Y1") ); |
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| 365 | newset.addColumn( Column("Y2") ); |
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| 366 | newset.addColumn( Column("Z1") ); |
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| 367 | newset.addColumn( Column("Z2") ); |
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[1273] | 368 | newset.addColumn( Column("NVOX") ); |
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| 369 | newset.addColumn( Column("NUMCH") ); |
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| 370 | newset.addColumn( Column("SPATSIZE") ); |
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[1064] | 371 | newset.addColumn( Column("FLAG") ); |
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| 372 | newset.addColumn( Column("XAV") ); |
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| 373 | newset.addColumn( Column("YAV") ); |
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| 374 | newset.addColumn( Column("ZAV") ); |
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| 375 | newset.addColumn( Column("XCENT") ); |
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| 376 | newset.addColumn( Column("YCENT") ); |
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| 377 | newset.addColumn( Column("ZCENT") ); |
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| 378 | newset.addColumn( Column("XPEAK") ); |
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| 379 | newset.addColumn( Column("YPEAK") ); |
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| 380 | newset.addColumn( Column("ZPEAK") ); |
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[1217] | 381 | |
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[1219] | 382 | // Define the column names and units where not predifined by the |
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| 383 | // default settings (ie. for those columns that depend on the |
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| 384 | // WCS or image units) |
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[1217] | 385 | if(head.isWCS()){ |
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| 386 | newset.column("RA").setName(head.lngtype()); |
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| 387 | newset.column("DEC").setName(head.lattype()); |
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| 388 | newset.column("RAJD").setName(head.lngtype()); |
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| 389 | newset.column("DECJD").setName(head.lattype()); |
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| 390 | if(head.canUseThirdAxis()){ |
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| 391 | if(head.WCS().spec < 0) // if it's not a spectral axis |
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| 392 | newset.column("VEL").setName( head.WCS().ctype[2] ); |
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| 393 | else |
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| 394 | newset.column("VEL").setName(head.getSpectralType()); |
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| 395 | if(head.getSpectralUnits().size()>0) |
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| 396 | newset.column("VEL").setUnits("[" + head.getSpectralUnits() + "]"); |
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| 397 | } |
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| 398 | newset.column("MAJ").setUnits("["+head.getShapeUnits()+"]"); |
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| 399 | newset.column("MIN").setUnits("["+head.getShapeUnits()+"]"); |
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| 400 | newset.column("WRA").setName("w_"+head.lngtype()); |
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| 401 | newset.column("WDEC").setName("w_"+head.lattype()); |
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| 402 | if(head.canUseThirdAxis()){ |
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| 403 | if(head.getSpectralUnits().size()>0){ |
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| 404 | newset.column("W50").setUnits("[" + head.getSpectralUnits() + "]"); |
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| 405 | newset.column("W20").setUnits("[" + head.getSpectralUnits() + "]"); |
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| 406 | newset.column("WVEL").setUnits("[" + head.getSpectralUnits() + "]"); |
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| 407 | } |
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| 408 | if(head.WCS().spec < 0) // if it's not a spectral axis |
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| 409 | newset.column("WVEL").setName( std::string("w_") + head.WCS().ctype[2] ); |
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| 410 | else |
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| 411 | newset.column("WVEL").setName(std::string("w_")+head.getSpectralType()); |
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| 412 | } |
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| 413 | } |
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| 414 | if(head.getIntFluxUnits().size()>0){ |
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| 415 | newset.column("FINT").setUnits("[" + head.getIntFluxUnits() + "]"); |
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| 416 | newset.column("FINTERR").setUnits("[" + head.getIntFluxUnits() + "]"); |
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| 417 | } |
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| 418 | newset.column("FTOT").setUnits("[" + head.getFluxUnits() + "]"); |
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| 419 | newset.column("FTOTERR").setUnits("[" + head.getFluxUnits() + "]"); |
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| 420 | newset.column("FPEAK").setUnits("[" + head.getFluxUnits() + "]"); |
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| 421 | |
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[438] | 422 | |
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[1219] | 423 | // Now test each object against each new column, ensuring each |
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| 424 | // column has sufficient width and (in most cases) precision to |
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| 425 | // accomodate the data. |
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[623] | 426 | std::vector<Detection>::iterator obj; |
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| 427 | for(obj = objectList.begin(); obj < objectList.end(); obj++){ |
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[93] | 428 | |
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[1217] | 429 | newset.column("NUM").check(obj->getID()); |
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| 430 | newset.column("NAME").check(obj->getName()); |
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| 431 | newset.column("X").check(obj->getXcentre()+obj->getXOffset()); |
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| 432 | newset.column("Y").check(obj->getYcentre()+obj->getYOffset()); |
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| 433 | newset.column("Z").check(obj->getZcentre()+obj->getZOffset()); |
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| 434 | if(head.isWCS()){ |
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| 435 | newset.column("RA").check(obj->getRAs()); |
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| 436 | newset.column("DEC").check(obj->getDecs()); |
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| 437 | newset.column("RAJD").check(obj->getRA()); |
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| 438 | newset.column("DECJD").check(obj->getDec()); |
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| 439 | if(head.canUseThirdAxis()){ |
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| 440 | newset.column("VEL").check(obj->getVel()); |
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| 441 | } |
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| 442 | newset.column("MAJ").check(obj->getMajorAxis()); |
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| 443 | newset.column("MIN").check(obj->getMinorAxis()); |
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[1219] | 444 | // For the PA column, we don't increase the precision. If |
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| 445 | // something is very close to zero position angle, then |
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| 446 | // we're happy to call it zero. |
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[1218] | 447 | newset.column("PA").check(obj->getPositionAngle(),false); |
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[1217] | 448 | newset.column("WRA").check(obj->getRAWidth()); |
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| 449 | newset.column("WDEC").check(obj->getDecWidth()); |
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| 450 | if(head.canUseThirdAxis()){ |
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| 451 | newset.column("W50").check(obj->getW50()); |
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| 452 | newset.column("W20").check(obj->getW20()); |
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| 453 | newset.column("WVEL").check(obj->getVelWidth()); |
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| 454 | } |
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| 455 | |
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| 456 | newset.column("FINT").check(obj->getIntegFlux()); |
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| 457 | if(obj->getIntegFluxError()>0.) |
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| 458 | newset.column("FINTERR").check(obj->getIntegFluxError()); |
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| 459 | } |
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| 460 | newset.column("FTOT").check(obj->getTotalFlux()); |
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| 461 | if(obj->getTotalFluxError()>0.) |
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| 462 | newset.column("FTOTERR").check(obj->getTotalFluxError()); |
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| 463 | newset.column("FPEAK").check(obj->getPeakFlux()); |
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| 464 | if(obj->getPeakSNR()>0.) |
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| 465 | newset.column("SNRPEAK").check(obj->getPeakSNR()); |
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| 466 | newset.column("X1").check(obj->getXmin()+obj->getXOffset()); |
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| 467 | newset.column("X2").check(obj->getXmax()+obj->getXOffset()); |
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| 468 | newset.column("Y1").check(obj->getYmin()+obj->getYOffset()); |
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| 469 | newset.column("Y2").check(obj->getYmax()+obj->getYOffset()); |
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| 470 | newset.column("Z1").check(obj->getZmin()+obj->getZOffset()); |
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| 471 | newset.column("Z2").check(obj->getZmax()+obj->getZOffset()); |
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[1273] | 472 | newset.column("NVOX").check(obj->getSize()); |
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[1217] | 473 | newset.column("XAV").check(obj->getXaverage()+obj->getXOffset()); |
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| 474 | newset.column("YAV").check(obj->getYaverage()+obj->getYOffset()); |
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| 475 | newset.column("ZAV").check(obj->getZaverage()+obj->getZOffset()); |
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| 476 | newset.column("XCENTROID").check(obj->getXCentroid()+obj->getXOffset()); |
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| 477 | newset.column("YCENTROID").check(obj->getYCentroid()+obj->getYOffset()); |
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| 478 | newset.column("ZCENTROID").check(obj->getZCentroid()+obj->getZOffset()); |
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| 479 | newset.column("XPEAK").check(obj->getXPeak()+obj->getXOffset()); |
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| 480 | newset.column("YPEAK").check(obj->getYPeak()+obj->getYOffset()); |
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| 481 | newset.column("ZPEAK").check(obj->getZPeak()+obj->getZOffset()); |
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[1275] | 482 | newset.column("NUMCH").check(obj->getNumChannels()); |
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[1217] | 483 | newset.column("SPATSIZE").check(obj->getSpatialSize()); |
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[93] | 484 | |
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[1218] | 485 | } |
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| 486 | |
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[378] | 487 | return newset; |
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[1218] | 488 | |
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[378] | 489 | } |
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[136] | 490 | |
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[378] | 491 | } |
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| 492 | |
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[93] | 493 | } |
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