[1048] | 1 | #include <duchamp/Outputs/VOTableCatalogueWriter.hh> |
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| 2 | #include <duchamp/Outputs/CatalogueWriter.hh> |
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[1061] | 3 | #include <duchamp/Outputs/columns.hh> |
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[1048] | 4 | #include <duchamp/Detection/detection.hh> |
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| 5 | #include <duchamp/Utils/utils.hh> |
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| 6 | #include <duchamp/Utils/VOField.hh> |
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| 7 | #include <duchamp/Utils/VOParam.hh> |
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[1049] | 8 | #include <ios> |
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[1048] | 9 | #include <iostream> |
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| 10 | #include <fstream> |
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| 11 | |
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| 12 | namespace duchamp { |
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| 13 | |
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| 14 | VOTableCatalogueWriter::VOTableCatalogueWriter(): |
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| 15 | CatalogueWriter() |
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| 16 | { |
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| 17 | this->itsTableName=""; |
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| 18 | this->itsTableDescription=""; |
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| 19 | } |
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| 20 | |
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| 21 | VOTableCatalogueWriter::VOTableCatalogueWriter(std::string name): |
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| 22 | CatalogueWriter(name) |
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| 23 | { |
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| 24 | this->itsTableName=""; |
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| 25 | this->itsTableDescription=""; |
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| 26 | } |
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| 27 | |
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| 28 | VOTableCatalogueWriter::VOTableCatalogueWriter(const VOTableCatalogueWriter& other) |
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| 29 | { |
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| 30 | this->operator=(other); |
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| 31 | } |
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| 32 | |
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| 33 | VOTableCatalogueWriter& VOTableCatalogueWriter::operator= (const VOTableCatalogueWriter& other) |
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| 34 | { |
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| 35 | if(this==&other) return *this; |
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| 36 | ((CatalogueWriter &) *this) = other; |
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| 37 | this->itsOpenFlag=false; |
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| 38 | this->itsTableName=other.itsTableName; |
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| 39 | this->itsTableDescription=other.itsTableDescription; |
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| 40 | return *this; |
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| 41 | } |
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| 42 | |
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[1049] | 43 | bool VOTableCatalogueWriter::openCatalogue(std::ios_base::openmode mode) |
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[1048] | 44 | { |
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| 45 | if(this->itsName == ""){ |
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| 46 | DUCHAMPERROR("VOTableCatalogueWriter","No catalogue name provided"); |
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| 47 | this->itsOpenFlag = false; |
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| 48 | } |
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| 49 | else { |
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[1049] | 50 | this->itsFileStream.open(this->itsName.c_str(),mode); |
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[1048] | 51 | this->itsOpenFlag = !this->itsFileStream.fail(); |
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| 52 | } |
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| 53 | if(!this->itsOpenFlag) |
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| 54 | DUCHAMPERROR("VOTableCatalogueWriter","Could not open file \""<<this->itsName<<"\""); |
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| 55 | return this->itsOpenFlag; |
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| 56 | |
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| 57 | } |
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| 58 | |
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| 59 | void VOTableCatalogueWriter::writeHeader() |
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| 60 | { |
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| 61 | if(this->itsOpenFlag){ |
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| 62 | |
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| 63 | this->itsFileStream<<"<?xml version=\"1.0\"?>\n"; |
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| 64 | this->itsFileStream<<"<VOTABLE version=\"1.1\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n"; |
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| 65 | this->itsFileStream<<" xsi:noNamespaceSchemaLocation=\"http://www.ivoa.net/xml/VOTable/VOTable/v1.1\">\n"; |
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| 66 | |
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| 67 | std::string ID,equinox,system; |
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| 68 | if(std::string(this->itsHead->WCS().lngtyp)=="RA") { //J2000 or B1950 |
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| 69 | if(this->itsHead->WCS().equinox==2000.){ |
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| 70 | ID=equinox= "J2000"; |
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| 71 | system="eq_FK5"; |
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| 72 | } |
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| 73 | else{ |
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| 74 | ID=equinox="B1950"; |
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| 75 | system="eq_FK4"; |
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| 76 | } |
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| 77 | this->itsFileStream <<" <COOSYS ID=\""<<ID<<"\" equinox=\""<<equinox<<"\" system=\""<<system<<"\"/>\n"; |
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| 78 | } |
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| 79 | else{ |
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| 80 | ID=system="galactic"; |
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| 81 | this->itsFileStream <<" <COOSYS ID=\""<<ID<<"\" system=\""<<system<<"\"/>\n"; |
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| 82 | } |
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| 83 | this->itsFileStream<<" <RESOURCE name=\"Duchamp Output\">\n"; |
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| 84 | this->itsFileStream<<" <TABLE name=\""<<this->itsTableName<<"\">\n"; |
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| 85 | this->itsFileStream<<" <DESCRIPTION>"<<this->itsTableDescription<<"</DESCRIPTION>\n"; |
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| 86 | |
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| 87 | |
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| 88 | } |
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| 89 | } |
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| 90 | |
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| 91 | void VOTableCatalogueWriter::writeParameters() |
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| 92 | { |
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| 93 | if(this->itsOpenFlag){ |
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| 94 | std::vector<VOParam> paramList = this->itsParam->getVOParams(); |
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| 95 | for(std::vector<VOParam>::iterator param=paramList.begin();param<paramList.end();param++){ |
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| 96 | this->itsFileStream << " "; |
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| 97 | param->printParam(this->itsFileStream); |
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| 98 | } |
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| 99 | } |
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| 100 | } |
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| 101 | |
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[1050] | 102 | void VOTableCatalogueWriter::writeStats() |
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| 103 | { |
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| 104 | if(this->itsOpenFlag){ |
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| 105 | |
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| 106 | VOParam threshParam("thresholdActual","","float",this->itsStats->getThreshold(),0,this->itsHead->getFluxUnits()); |
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| 107 | this->itsFileStream << " "; |
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| 108 | threshParam.printParam(this->itsFileStream); |
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| 109 | if(!this->itsParam->getFlagUserThreshold()){ |
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| 110 | VOParam middleParam("noiseMeanActual","","float",this->itsStats->getMiddle(),0,this->itsHead->getFluxUnits()); |
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| 111 | this->itsFileStream << " "; |
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| 112 | middleParam.printParam(this->itsFileStream); |
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| 113 | VOParam spreadParam("noiseSpreadActual","","float",this->itsStats->getSpread(),0,this->itsHead->getFluxUnits()); |
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| 114 | this->itsFileStream << " "; |
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| 115 | spreadParam.printParam(this->itsFileStream); |
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| 116 | } |
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| 117 | } |
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| 118 | } |
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| 119 | |
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[1048] | 120 | void VOTableCatalogueWriter::writeTableHeader() |
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| 121 | { |
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| 122 | std::map<std::string,std::string> posUCDmap; |
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| 123 | posUCDmap.insert(std::pair<std::string,std::string>("ra","pos.eq.ra")); |
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| 124 | posUCDmap.insert(std::pair<std::string,std::string>("dec","pos.eq.dec")); |
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| 125 | posUCDmap.insert(std::pair<std::string,std::string>("glon","pos.galactic.lng")); |
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| 126 | posUCDmap.insert(std::pair<std::string,std::string>("glat","pos.galactic.lat")); |
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[1061] | 127 | Catalogues::Column raCol=this->itsColumnSpecification->at(Catalogues::RAJD); |
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[1048] | 128 | std::string lngUCDbase = posUCDmap[makelower(raCol.getName())]; |
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[1061] | 129 | Catalogues::Column decCol=this->itsColumnSpecification->at(Catalogues::DECJD); |
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[1048] | 130 | std::string latUCDbase = posUCDmap[makelower(decCol.getName())]; |
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| 131 | |
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| 132 | std::map<std::string,std::string> specUCDmap; |
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| 133 | specUCDmap.insert(std::pair<std::string,std::string>("VELO","phys.veloc;spect.dopplerVeloc")); |
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| 134 | specUCDmap.insert(std::pair<std::string,std::string>("VOPT","phys.veloc;spect.dopplerVeloc.opt")); |
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| 135 | specUCDmap.insert(std::pair<std::string,std::string>("VRAD","phys.veloc;spect.dopplerVeloc.rad")); |
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| 136 | specUCDmap.insert(std::pair<std::string,std::string>("FREQ","em.freq")); |
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| 137 | specUCDmap.insert(std::pair<std::string,std::string>("ENER","em.energy")); |
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| 138 | specUCDmap.insert(std::pair<std::string,std::string>("WAVN","em.wavenumber")); |
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| 139 | specUCDmap.insert(std::pair<std::string,std::string>("WAVE","em.wl")); |
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| 140 | specUCDmap.insert(std::pair<std::string,std::string>("AWAV","em.wl")); |
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| 141 | specUCDmap.insert(std::pair<std::string,std::string>("ZOPT","src.redshift")); |
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| 142 | specUCDmap.insert(std::pair<std::string,std::string>("BETA","src.redshift; spect.dopplerVeloc")); |
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[1061] | 143 | std::string specUCDbase = specUCDmap[this->itsColumnSpecification->at(Catalogues::VEL).getName()]; |
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[1048] | 144 | |
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[1061] | 145 | std::vector<Catalogues::Column>::iterator col; |
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[1048] | 146 | for(col=this->itsColumnSpecification->begin();col<this->itsColumnSpecification->end();col++){ |
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| 147 | |
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[1061] | 148 | if(col->doCol(Catalogues::VOTABLE,this->itsHead->isSpecOK())){ |
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[1048] | 149 | VOField field(*col); |
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[1061] | 150 | if(col->type()=="RAJD") field.setUCD(lngUCDbase+";meta.main"); |
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| 151 | if(col->type()=="WRA") field.setUCD("phys.angSize;"+lngUCDbase); |
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| 152 | if(col->type()=="DECJD") field.setUCD(latUCDbase+";meta.main"); |
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| 153 | if(col->type()=="WDEC") field.setUCD("phys.angSize;"+latUCDbase); |
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| 154 | if(col->type()=="VEL") field.setUCD(specUCDbase+";meta.main"); |
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| 155 | if(col->type()=="W20") field.setUCD("spect.line.width;"+specUCDbase); |
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| 156 | if(col->type()=="W50") field.setUCD("spect.line.width;"+specUCDbase); |
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| 157 | if(col->type()=="WVEL") field.setUCD("spect.line.width;"+specUCDbase); |
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[1048] | 158 | this->itsFileStream << " "; |
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| 159 | field.printField(this->itsFileStream); |
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| 160 | } |
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| 161 | |
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| 162 | } |
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| 163 | |
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| 164 | this->itsFileStream<<" <DATA>\n" |
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| 165 | <<" <TABLEDATA>\n"; |
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| 166 | |
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| 167 | } |
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| 168 | |
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| 169 | void VOTableCatalogueWriter::writeEntries() |
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| 170 | { |
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| 171 | this->itsFileStream.setf(std::ios::fixed); |
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| 172 | |
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| 173 | for(std::vector<Detection>::iterator obj=this->itsObjectList->begin();obj<this->itsObjectList->end();obj++) |
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| 174 | this->writeEntry(&*obj); |
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| 175 | } |
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| 176 | |
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| 177 | void VOTableCatalogueWriter::writeEntry(Detection *object) |
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| 178 | { |
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| 179 | |
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| 180 | this->itsFileStream<<" <TR>\n"; |
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| 181 | this->itsFileStream<<" "; |
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[1061] | 182 | std::vector<Catalogues::Column>::iterator col; |
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[1048] | 183 | for(col=this->itsColumnSpecification->begin();col<this->itsColumnSpecification->end();col++){ |
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[1061] | 184 | if(col->doCol(Catalogues::VOTABLE,this->itsHead->isSpecOK())){ |
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[1048] | 185 | this->itsFileStream<<"<TD>"; |
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| 186 | object->printTableEntry(this->itsFileStream, *col); |
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| 187 | this->itsFileStream<<"</TD>"; |
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| 188 | } |
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| 189 | } |
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| 190 | this->itsFileStream<<"\n"; |
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| 191 | this->itsFileStream<<" </TR>\n"; |
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| 192 | |
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| 193 | } |
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| 194 | |
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| 195 | void VOTableCatalogueWriter::writeFooter() |
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| 196 | { |
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| 197 | this->itsFileStream<<" </TABLEDATA>\n"; |
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| 198 | this->itsFileStream<<" </DATA>\n"; |
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| 199 | this->itsFileStream<<" </TABLE>\n"; |
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| 200 | this->itsFileStream<<" </RESOURCE>\n"; |
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| 201 | this->itsFileStream<<"</VOTABLE>\n"; |
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| 202 | resetiosflags(std::ios::fixed); |
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| 203 | } |
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| 204 | |
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| 205 | bool VOTableCatalogueWriter::closeCatalogue() |
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| 206 | { |
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| 207 | this->itsFileStream.close(); |
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| 208 | return !this->itsFileStream.fail(); |
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| 209 | } |
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| 210 | |
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| 211 | |
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| 212 | |
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| 213 | |
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| 214 | } |
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