[301] | 1 | // ----------------------------------------------------------------------- |
---|
| 2 | // outputDetection.cc: Different ways of printing inforamtion about |
---|
| 3 | // the Detections. |
---|
| 4 | // ----------------------------------------------------------------------- |
---|
| 5 | // Copyright (C) 2006, Matthew Whiting, ATNF |
---|
| 6 | // |
---|
| 7 | // This program is free software; you can redistribute it and/or modify it |
---|
| 8 | // under the terms of the GNU General Public License as published by the |
---|
| 9 | // Free Software Foundation; either version 2 of the License, or (at your |
---|
| 10 | // option) any later version. |
---|
| 11 | // |
---|
| 12 | // Duchamp is distributed in the hope that it will be useful, but WITHOUT |
---|
| 13 | // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
---|
| 14 | // FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License |
---|
| 15 | // for more details. |
---|
| 16 | // |
---|
| 17 | // You should have received a copy of the GNU General Public License |
---|
| 18 | // along with Duchamp; if not, write to the Free Software Foundation, |
---|
| 19 | // Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA |
---|
| 20 | // |
---|
| 21 | // Correspondence concerning Duchamp may be directed to: |
---|
| 22 | // Internet email: Matthew.Whiting [at] atnf.csiro.au |
---|
| 23 | // Postal address: Dr. Matthew Whiting |
---|
| 24 | // Australia Telescope National Facility, CSIRO |
---|
| 25 | // PO Box 76 |
---|
| 26 | // Epping NSW 1710 |
---|
| 27 | // AUSTRALIA |
---|
| 28 | // ----------------------------------------------------------------------- |
---|
[3] | 29 | #include <iostream> |
---|
| 30 | #include <sstream> |
---|
| 31 | #include <fstream> |
---|
| 32 | #include <iomanip> |
---|
| 33 | #include <string> |
---|
[103] | 34 | #include <vector> |
---|
[393] | 35 | #include <duchamp/duchamp.hh> |
---|
| 36 | #include <duchamp/Detection/detection.hh> |
---|
| 37 | #include <duchamp/Cubes/cubes.hh> |
---|
| 38 | #include <duchamp/Utils/utils.hh> |
---|
| 39 | #include <duchamp/Detection/columns.hh> |
---|
| 40 | #include <duchamp/Utils/feedback.hh> |
---|
[3] | 41 | |
---|
[378] | 42 | namespace duchamp |
---|
[3] | 43 | { |
---|
| 44 | |
---|
[378] | 45 | using namespace Column; |
---|
| 46 | |
---|
[439] | 47 | void outputTableHeader(std::ostream &stream, std::vector<Column::Col> columns, std::string tableType, bool flagWCS) |
---|
| 48 | { |
---|
[528] | 49 | /// @details |
---|
| 50 | /// Prints the header row for a table of detections. The columns |
---|
| 51 | /// that are included depend on the value of tableType, according |
---|
| 52 | /// to the Column::doCol() function. The format is a row of |
---|
| 53 | /// dashes, a row with column names, a row with column units, and |
---|
| 54 | /// another row of dashes. |
---|
| 55 | /// \param stream Where the output is written |
---|
| 56 | /// \param columns The vector list of Column objects |
---|
| 57 | /// \param tableType A string saying what format to use: one of |
---|
| 58 | /// "file", "log", "screen" or "votable" (although the latter |
---|
| 59 | /// shouldn't be used with this function). |
---|
| 60 | /// \param flagWCS A flag for use with Column::doCol(), specifying |
---|
| 61 | /// whether to use FINT or FTOT. |
---|
[439] | 62 | |
---|
[440] | 63 | std::vector<Column::Col>::iterator col; |
---|
| 64 | for(col=columns.begin();col<columns.end();col++) |
---|
| 65 | if(col->doCol(tableType,flagWCS)) col->printDash(stream); |
---|
[439] | 66 | stream << "\n"; |
---|
[440] | 67 | for(col=columns.begin();col<columns.end();col++) |
---|
| 68 | if(col->doCol(tableType,flagWCS)) col->printTitle(stream); |
---|
[439] | 69 | stream << "\n"; |
---|
[440] | 70 | for(col=columns.begin();col<columns.end();col++) |
---|
| 71 | if(col->doCol(tableType,flagWCS)) col->printUnits(stream); |
---|
[439] | 72 | stream << "\n"; |
---|
[440] | 73 | for(col=columns.begin();col<columns.end();col++) |
---|
| 74 | if(col->doCol(tableType,flagWCS)) col->printDash(stream); |
---|
[439] | 75 | stream << "\n"; |
---|
| 76 | |
---|
| 77 | } |
---|
[441] | 78 | //-------------------------------------------------------------------- |
---|
[439] | 79 | |
---|
[440] | 80 | void Detection::printTableRow(std::ostream &stream, std::vector<Column::Col> columns, std::string tableType) |
---|
| 81 | { |
---|
[528] | 82 | /// @details |
---|
| 83 | /// Print a row of values for the current Detection into an output |
---|
| 84 | /// table. Columns are printed according to the tableType string, |
---|
| 85 | /// using the Column::doCol() function as a determinant. |
---|
| 86 | /// \param stream Where the output is written |
---|
| 87 | /// \param columns The vector list of Column objects |
---|
| 88 | /// \param tableType A string saying what format to use: one of |
---|
| 89 | /// "file", "log", "screen" or "votable" (although the latter |
---|
| 90 | /// shouldn't be used with this function). |
---|
[439] | 91 | |
---|
[440] | 92 | stream.setf(std::ios::fixed); |
---|
| 93 | std::vector<Column::Col>::iterator col; |
---|
| 94 | for(col=columns.begin();col<columns.end();col++) |
---|
| 95 | if(col->doCol(tableType,this->flagWCS)) this->printTableEntry(stream, *col); |
---|
| 96 | |
---|
| 97 | stream << "\n"; |
---|
| 98 | |
---|
| 99 | } |
---|
[441] | 100 | //-------------------------------------------------------------------- |
---|
[440] | 101 | |
---|
| 102 | void Detection::printTableEntry(std::ostream &stream, Column::Col column) |
---|
| 103 | { |
---|
[528] | 104 | /// @details |
---|
| 105 | /// Print a single value into an output table. The Detection's |
---|
| 106 | /// correct value is extracted according to the Column::COLNAME |
---|
| 107 | /// key in the column given. |
---|
| 108 | /// \param stream Where the output is written |
---|
| 109 | /// \param column The Column object defining the formatting. |
---|
[440] | 110 | |
---|
| 111 | switch(column.getType()) |
---|
| 112 | { |
---|
| 113 | case NUM: |
---|
| 114 | column.printEntry(stream,this->id); |
---|
| 115 | break; |
---|
| 116 | case NAME: |
---|
| 117 | column.printEntry(stream,this->name); |
---|
| 118 | break; |
---|
| 119 | case X: |
---|
| 120 | column.printEntry(stream,this->getXcentre() + this->xSubOffset); |
---|
| 121 | break; |
---|
| 122 | case Y: |
---|
| 123 | column.printEntry(stream,this->getYcentre() + this->ySubOffset); |
---|
| 124 | break; |
---|
| 125 | case Z: |
---|
| 126 | column.printEntry(stream,this->getZcentre() + this->zSubOffset); |
---|
| 127 | break; |
---|
| 128 | case RA: |
---|
| 129 | if(this->flagWCS) column.printEntry(stream,this->raS); |
---|
| 130 | else column.printBlank(stream); |
---|
| 131 | break; |
---|
| 132 | case DEC: |
---|
| 133 | if(this->flagWCS) column.printEntry(stream,this->decS); |
---|
| 134 | else column.printBlank(stream); |
---|
| 135 | break; |
---|
| 136 | case RAJD: |
---|
| 137 | if(this->flagWCS) column.printEntry(stream,this->ra); |
---|
| 138 | else column.printBlank(stream); |
---|
| 139 | break; |
---|
| 140 | case DECJD: |
---|
| 141 | if(this->flagWCS) column.printEntry(stream,this->dec); |
---|
| 142 | else column.printBlank(stream); |
---|
| 143 | break; |
---|
| 144 | case VEL: |
---|
| 145 | if(this->flagWCS) { |
---|
| 146 | if(this->specOK) column.printEntry(stream,this->vel); |
---|
| 147 | else column.printEntry(stream,0.); |
---|
| 148 | } |
---|
| 149 | else column.printBlank(stream); |
---|
| 150 | break; |
---|
| 151 | case WRA: |
---|
| 152 | if(this->flagWCS) column.printEntry(stream,this->raWidth); |
---|
| 153 | else column.printBlank(stream); |
---|
| 154 | break; |
---|
| 155 | case WDEC: |
---|
| 156 | if(this->flagWCS) column.printEntry(stream,this->decWidth); |
---|
| 157 | else column.printBlank(stream); |
---|
| 158 | break; |
---|
[463] | 159 | case W50: |
---|
| 160 | if(this->flagWCS) { |
---|
| 161 | if(this->specOK) column.printEntry(stream,this->w50); |
---|
| 162 | else column.printEntry(stream,0.); |
---|
| 163 | } |
---|
| 164 | else column.printBlank(stream); |
---|
| 165 | break; |
---|
| 166 | case W20: |
---|
| 167 | if(this->flagWCS) { |
---|
| 168 | if(this->specOK) column.printEntry(stream,this->w20); |
---|
| 169 | else column.printEntry(stream,0.); |
---|
| 170 | } |
---|
| 171 | else column.printBlank(stream); |
---|
| 172 | break; |
---|
[440] | 173 | case WVEL: |
---|
| 174 | if(this->flagWCS) { |
---|
| 175 | if(this->specOK) column.printEntry(stream,this->velWidth); |
---|
| 176 | else column.printEntry(stream,0.); |
---|
| 177 | } |
---|
| 178 | else column.printBlank(stream); |
---|
| 179 | break; |
---|
| 180 | case FINT: |
---|
| 181 | column.printEntry(stream,this->intFlux); |
---|
| 182 | break; |
---|
| 183 | case FTOT: |
---|
| 184 | column.printEntry(stream,this->totalFlux); |
---|
| 185 | break; |
---|
| 186 | case FPEAK: |
---|
| 187 | column.printEntry(stream,this->peakFlux); |
---|
| 188 | break; |
---|
| 189 | case SNRPEAK: |
---|
| 190 | column.printEntry(stream,this->peakSNR); |
---|
| 191 | break; |
---|
| 192 | case X1: |
---|
| 193 | column.printEntry(stream,this->getXmin() + this->xSubOffset); |
---|
| 194 | break; |
---|
| 195 | case X2: |
---|
| 196 | column.printEntry(stream,this->getXmax() + this->xSubOffset); |
---|
| 197 | break; |
---|
| 198 | case Y1: |
---|
| 199 | column.printEntry(stream,this->getYmin() + this->ySubOffset); |
---|
| 200 | break; |
---|
| 201 | case Y2: |
---|
| 202 | column.printEntry(stream,this->getYmax() + this->ySubOffset); |
---|
| 203 | break; |
---|
| 204 | case Z1: |
---|
| 205 | column.printEntry(stream,this->getZmin() + this->zSubOffset); |
---|
| 206 | break; |
---|
| 207 | case Z2: |
---|
| 208 | column.printEntry(stream,this->getZmax() + this->zSubOffset); |
---|
| 209 | break; |
---|
| 210 | case NPIX: |
---|
[570] | 211 | // column.printEntry(stream,int(this->pixelArray.getSize())); |
---|
| 212 | column.printEntry(stream,int(this->getSize())); |
---|
[440] | 213 | break; |
---|
| 214 | case FLAG: |
---|
| 215 | column.printEntry(stream,this->flagText); |
---|
| 216 | break; |
---|
| 217 | case XAV: |
---|
[570] | 218 | // column.printEntry(stream,this->getXAverage() + this->xSubOffset); |
---|
| 219 | column.printEntry(stream,this->getXaverage() + this->xSubOffset); |
---|
[440] | 220 | break; |
---|
| 221 | case YAV: |
---|
[570] | 222 | // column.printEntry(stream,this->getYAverage() + this->ySubOffset); |
---|
| 223 | column.printEntry(stream,this->getYaverage() + this->ySubOffset); |
---|
[440] | 224 | break; |
---|
| 225 | case ZAV: |
---|
[570] | 226 | // column.printEntry(stream,this->getZAverage() + this->zSubOffset); |
---|
| 227 | column.printEntry(stream,this->getZaverage() + this->zSubOffset); |
---|
[440] | 228 | break; |
---|
| 229 | case XCENT: |
---|
| 230 | column.printEntry(stream,this->getXCentroid() + this->xSubOffset); |
---|
| 231 | break; |
---|
| 232 | case YCENT: |
---|
| 233 | column.printEntry(stream,this->getYCentroid() + this->ySubOffset); |
---|
| 234 | break; |
---|
| 235 | case ZCENT: |
---|
| 236 | column.printEntry(stream,this->getZCentroid() + this->zSubOffset); |
---|
| 237 | break; |
---|
| 238 | case XPEAK: |
---|
| 239 | column.printEntry(stream,this->getXPeak() + this->xSubOffset); |
---|
| 240 | break; |
---|
| 241 | case YPEAK: |
---|
| 242 | column.printEntry(stream,this->getYPeak() + this->ySubOffset); |
---|
| 243 | break; |
---|
| 244 | case ZPEAK: |
---|
| 245 | column.printEntry(stream,this->getZPeak() + this->zSubOffset); |
---|
| 246 | break; |
---|
| 247 | case UNKNOWN: |
---|
| 248 | default: |
---|
| 249 | break; |
---|
| 250 | }; |
---|
| 251 | } |
---|
[378] | 252 | //-------------------------------------------------------------------- |
---|
[265] | 253 | |
---|
[378] | 254 | std::string Detection::outputLabelWCS() |
---|
| 255 | { |
---|
[528] | 256 | /// @details |
---|
| 257 | /// Prints to a std::string the WCS position and velocity |
---|
| 258 | /// information of the Detection, as well as the ID number and any |
---|
| 259 | /// flags. |
---|
| 260 | /// Assumes the WCS parameters of the object have been calculated. |
---|
| 261 | /// If they have not (given by the isWCS() function), then the |
---|
| 262 | /// WCS-related outputs are left blank. |
---|
| 263 | /// Returns the string. |
---|
| 264 | |
---|
[378] | 265 | std::stringstream ss; |
---|
| 266 | ss << "#" << std::setfill('0') << std::setw(3) << this->id << ": "; |
---|
| 267 | ss << this->name ; |
---|
[511] | 268 | if(this->getFlagText()!="-") |
---|
[378] | 269 | ss << " [" << this->getFlagText() << "] "; |
---|
| 270 | else ss<< " "; |
---|
| 271 | ss << std::setfill(' '); |
---|
| 272 | ss << this->raS << ", "; |
---|
| 273 | ss << this->decS; |
---|
| 274 | if(this->specOK){ |
---|
| 275 | ss << std::setprecision(this->velPrec); |
---|
| 276 | ss.setf(std::ios::fixed); |
---|
| 277 | ss << ", " << this->vel << " " << this->specUnits; |
---|
| 278 | } |
---|
[300] | 279 | |
---|
[378] | 280 | return ss.str(); |
---|
[300] | 281 | |
---|
[378] | 282 | } |
---|
| 283 | //-------------------------------------------------------------------- |
---|
[265] | 284 | |
---|
[378] | 285 | std::string Detection::outputLabelFluxes() |
---|
| 286 | { |
---|
[528] | 287 | /// @details |
---|
| 288 | /// Prints to a std::string the fluxes of the object, both |
---|
| 289 | /// integrated/total and peak, as well as the peak S/N value. |
---|
| 290 | /// Assumes the WCS parameters of the object have been calculated. |
---|
| 291 | /// If they have not (given by the isWCS() function), then the ID |
---|
| 292 | /// number and the total/peak/SNR values are returned. |
---|
| 293 | /// /return The string. |
---|
[378] | 294 | |
---|
| 295 | std::stringstream ss; |
---|
| 296 | ss.setf(std::ios::fixed); |
---|
[265] | 297 | if(this->flagWCS){ |
---|
[378] | 298 | ss << std::setprecision(this->fintPrec); |
---|
| 299 | ss << "F\\dint\\u=" << this->intFlux << " " << this->intFluxUnits; |
---|
| 300 | ss << std::setprecision(this->fpeakPrec); |
---|
| 301 | ss << ", F\\dpeak\\u=" << this->peakFlux << " " << this->fluxUnits; |
---|
| 302 | ss << std::setprecision(this->snrPrec); |
---|
| 303 | ss << ", S/N\\dmax\\u=" << this->peakSNR; |
---|
[265] | 304 | } |
---|
[378] | 305 | else{ |
---|
| 306 | ss << "#" << std::setfill('0') << std::setw(3) << this->id << ": "; |
---|
| 307 | ss << std::setprecision(this->fintPrec); |
---|
| 308 | ss << "F\\dtot\\u=" << this->totalFlux << this->fluxUnits; |
---|
| 309 | ss << std::setprecision(this->fpeakPrec); |
---|
| 310 | ss << ", F\\dpeak\\u=" << this->peakFlux << this->fluxUnits; |
---|
| 311 | ss << std::setprecision(this->snrPrec); |
---|
| 312 | ss << ", S/N\\dmax\\u=" << this->peakSNR; |
---|
| 313 | } |
---|
| 314 | std::string output = ss.str(); |
---|
[265] | 315 | |
---|
[378] | 316 | return output; |
---|
[367] | 317 | } |
---|
[378] | 318 | //-------------------------------------------------------------------- |
---|
[3] | 319 | |
---|
[378] | 320 | std::string Detection::outputLabelWidths() |
---|
| 321 | { |
---|
[528] | 322 | /// @details |
---|
| 323 | /// Prints to a std::string the widths of the object in position |
---|
| 324 | /// and velocity. |
---|
| 325 | /// Assumes the WCS parameters of the object have been calculated. |
---|
| 326 | /// If they have not (given by the isWCS() function), then a string of |
---|
| 327 | /// length 0 is returned. |
---|
| 328 | /// \returns The string. |
---|
[3] | 329 | |
---|
[378] | 330 | std::string output; |
---|
| 331 | if(this->flagWCS){ |
---|
| 332 | std::stringstream ss; |
---|
| 333 | ss.setf(std::ios::fixed); |
---|
| 334 | ss << std::setprecision(this->posPrec); |
---|
[464] | 335 | ss << "W\\d" << this->lngtype <<"\\u=" << this->raWidth; |
---|
| 336 | ss << ", W\\d" << this->lattype <<"\\u=" << this->decWidth; |
---|
[378] | 337 | if(this->specOK){ |
---|
| 338 | ss << std::setprecision(this->velPrec); |
---|
[464] | 339 | ss << ", W\\d50\\u=" << this->w50 << " " << this->specUnits; |
---|
| 340 | ss << ", W\\d20\\u=" << this->w20 << " " << this->specUnits; |
---|
| 341 | ss << ", W\\dVel\\u=" << this->velWidth << " " << this->specUnits; |
---|
[378] | 342 | } |
---|
| 343 | output = ss.str(); |
---|
| 344 | } |
---|
| 345 | else output = this->outputLabelFluxes(); |
---|
[3] | 346 | |
---|
[378] | 347 | return output; |
---|
[103] | 348 | } |
---|
[378] | 349 | //-------------------------------------------------------------------- |
---|
[103] | 350 | |
---|
[378] | 351 | std::string Detection::outputLabelPix() |
---|
| 352 | { |
---|
[528] | 353 | /// @details |
---|
| 354 | /// Prints to a std::string the pixel centres and extents of a |
---|
| 355 | /// detected object. Returns the string. |
---|
[103] | 356 | |
---|
[282] | 357 | std::stringstream ss; |
---|
| 358 | ss.setf(std::ios::fixed); |
---|
[378] | 359 | ss << "Centre: "; |
---|
| 360 | ss << std::setprecision(this->xyzPrec) << std::setfill(' '); |
---|
| 361 | ss <<"(" << this->getXcentre() + this->xSubOffset; |
---|
| 362 | ss <<", " << this->getYcentre() + this->ySubOffset; |
---|
| 363 | ss <<", " << this->getZcentre() + this->zSubOffset << ")"; |
---|
[570] | 364 | // ss <<", Size: "<< this->pixelArray.getSize() << " voxels, "; |
---|
| 365 | ss <<", Size: "<< this->getSize() << " voxels, "; |
---|
[378] | 366 | ss <<"Range: ["; |
---|
| 367 | ss << this->getXmin() + this->xSubOffset |
---|
| 368 | <<":" << this->getXmax() + this->xSubOffset; |
---|
| 369 | ss <<", " << this->getYmin() + this->ySubOffset |
---|
| 370 | <<":" << this->getYmax() + this->ySubOffset; |
---|
[356] | 371 | if(this->specOK){ |
---|
[378] | 372 | ss <<", " << this->getZmin() + this->zSubOffset |
---|
| 373 | <<":" << this->getZmax() + this->zSubOffset; |
---|
[282] | 374 | } |
---|
[378] | 375 | ss<< "]"; |
---|
| 376 | |
---|
| 377 | return ss.str(); |
---|
[282] | 378 | } |
---|
| 379 | |
---|
| 380 | |
---|
[3] | 381 | } |
---|