[301] | 1 | // ----------------------------------------------------------------------- |
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| 2 | // outputDetection.cc: Different ways of printing inforamtion about |
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| 3 | // the Detections. |
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| 4 | // ----------------------------------------------------------------------- |
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| 5 | // Copyright (C) 2006, Matthew Whiting, ATNF |
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| 6 | // |
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| 7 | // This program is free software; you can redistribute it and/or modify it |
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| 8 | // under the terms of the GNU General Public License as published by the |
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| 9 | // Free Software Foundation; either version 2 of the License, or (at your |
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| 10 | // option) any later version. |
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| 11 | // |
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| 12 | // Duchamp is distributed in the hope that it will be useful, but WITHOUT |
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| 13 | // ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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| 14 | // FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License |
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| 15 | // for more details. |
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| 16 | // |
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| 17 | // You should have received a copy of the GNU General Public License |
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| 18 | // along with Duchamp; if not, write to the Free Software Foundation, |
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| 19 | // Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA |
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| 20 | // |
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| 21 | // Correspondence concerning Duchamp may be directed to: |
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| 22 | // Internet email: Matthew.Whiting [at] atnf.csiro.au |
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| 23 | // Postal address: Dr. Matthew Whiting |
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| 24 | // Australia Telescope National Facility, CSIRO |
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| 25 | // PO Box 76 |
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| 26 | // Epping NSW 1710 |
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| 27 | // AUSTRALIA |
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| 28 | // ----------------------------------------------------------------------- |
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[3] | 29 | #include <iostream> |
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| 30 | #include <sstream> |
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| 31 | #include <fstream> |
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| 32 | #include <iomanip> |
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| 33 | #include <string> |
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[103] | 34 | #include <vector> |
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[137] | 35 | #include <duchamp.hh> |
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[103] | 36 | #include <Detection/detection.hh> |
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[3] | 37 | #include <Cubes/cubes.hh> |
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| 38 | #include <Utils/utils.hh> |
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[103] | 39 | #include <Detection/columns.hh> |
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[365] | 40 | #include <Utils/feedback.hh> |
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[3] | 41 | |
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[378] | 42 | namespace duchamp |
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[3] | 43 | { |
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| 44 | |
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[378] | 45 | using namespace Column; |
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| 46 | |
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| 47 | void Detection::outputDetectionTextHeader(std::ostream &stream, |
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| 48 | std::vector<Column::Col> columns) |
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| 49 | { |
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| 50 | /** |
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| 51 | * Prints to a stream the column headers to match the output |
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| 52 | * generated by outputDetectionText or outputDetectionTextWCS |
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| 53 | * The exact columns depend on the std::vector<Col>. |
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| 54 | * |
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| 55 | * If the WCS is good, it will print the FINT column, otherwise the |
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| 56 | * FTOT column. |
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| 57 | * |
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| 58 | * NOTE: It does not print out the 9 columns containing the three |
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| 59 | * different pixel centre options -- it stops after the FLAG |
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| 60 | * column. |
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| 61 | * |
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| 62 | * \param stream Where to print. |
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| 63 | * \param columns The set of Columns::Col objects that define the |
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| 64 | * columns to be printed. |
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| 65 | */ |
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| 66 | |
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| 67 | std::vector<Col> local = columns; |
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| 68 | if(local.size()==Column::numColumns){ |
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| 69 | std::vector <Col>::iterator iter; |
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| 70 | if(this->flagWCS) |
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| 71 | iter = local.begin() + FTOT; |
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| 72 | else |
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| 73 | iter = local.begin() + FINT; |
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| 74 | local.erase(iter); |
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| 75 | } |
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[265] | 76 | |
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[378] | 77 | int size = local.size(); |
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| 78 | if(int(FLAG)<size) size = int(FLAG); |
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[144] | 79 | |
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[378] | 80 | stream << std::setfill(' '); |
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| 81 | for(int i=0;i<size;i++) local[i].printDash(stream); |
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| 82 | stream << std::endl; |
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| 83 | for(int i=0;i<size;i++) local[i].printTitle(stream); |
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| 84 | stream << std::endl; |
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| 85 | for(int i=0;i<size;i++) local[i].printUnits(stream); |
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| 86 | stream << std::endl; |
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| 87 | for(int i=0;i<size;i++) local[i].printDash(stream); |
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| 88 | stream << std::endl; |
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| 89 | } |
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| 90 | //-------------------------------------------------------------------- |
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[265] | 91 | |
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[378] | 92 | void Detection::outputDetectionTextWCS(std::ostream &stream, |
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| 93 | std::vector<Column::Col> columns) |
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| 94 | { |
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| 95 | /** |
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| 96 | * Prints to a stream the relevant details of a detected object, |
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| 97 | * including the WCS parameters, which need to have been |
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| 98 | * calculated. If they have not (given by the isWCS() function), |
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| 99 | * then the WCS-related outputs are left blank. |
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| 100 | * |
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| 101 | * Also, if the WCS is good, we print the FINT column, else the |
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| 102 | * FTOT column. |
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| 103 | * |
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| 104 | * \param stream Where to print. |
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| 105 | * \param columns The set of Columns::Col objects that define the |
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| 106 | * columns to be printed. |
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| 107 | */ |
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[3] | 108 | |
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[378] | 109 | if(columns.size()!=Column::numColumns){ |
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| 110 | std::stringstream errmsg; |
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| 111 | errmsg << "columnSet used has wrong number of columns (" |
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| 112 | << columns.size() << ")\nshould be " |
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| 113 | << Column::numColumns << ".\n"; |
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| 114 | duchampError("outputDetectionTextWCS",errmsg.str()); |
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| 115 | } |
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| 116 | else{ |
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| 117 | stream.setf(std::ios::fixed); |
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| 118 | columns[NUM].printEntry(stream,this->id); |
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| 119 | columns[NAME].printEntry(stream,this->name); |
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| 120 | columns[X].printEntry(stream,this->getXcentre() + this->xSubOffset); |
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| 121 | columns[Y].printEntry(stream,this->getYcentre() + this->ySubOffset); |
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| 122 | columns[Z].printEntry(stream,this->getZcentre() + this->zSubOffset); |
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| 123 | if(this->flagWCS){ |
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| 124 | columns[RA].printEntry(stream,this->raS); |
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| 125 | columns[DEC].printEntry(stream,this->decS); |
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| 126 | if(this->specOK) columns[VEL].printEntry(stream,this->vel); |
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| 127 | else columns[VEL].printEntry(stream,0.); |
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| 128 | columns[WRA].printEntry(stream,this->raWidth); |
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| 129 | columns[WDEC].printEntry(stream,this->decWidth); |
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| 130 | if(this->specOK) columns[WVEL].printEntry(stream,this->velWidth); |
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| 131 | else columns[WVEL].printEntry(stream,0.); |
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| 132 | } |
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| 133 | else for(int i=RA;i<=WVEL;i++) columns[i].printBlank(stream); |
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| 134 | if(this->flagWCS) |
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| 135 | columns[FINT].printEntry(stream,this->intFlux); |
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| 136 | else |
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| 137 | columns[FTOT].printEntry(stream,this->totalFlux); |
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| 138 | columns[FPEAK].printEntry(stream,this->peakFlux); |
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| 139 | columns[SNRPEAK].printEntry(stream,this->peakSNR); |
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| 140 | columns[X1].printEntry(stream,this->getXmin() + this->xSubOffset); |
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| 141 | columns[X2].printEntry(stream,this->getXmax() + this->xSubOffset); |
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| 142 | columns[Y1].printEntry(stream,this->getYmin() + this->ySubOffset); |
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| 143 | columns[Y2].printEntry(stream,this->getYmax() + this->ySubOffset); |
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| 144 | columns[Z1].printEntry(stream,this->getZmin() + this->zSubOffset); |
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| 145 | columns[Z2].printEntry(stream,this->getZmax() + this->zSubOffset); |
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| 146 | columns[NPIX].printEntry(stream,int(this->pixelArray.getSize())); |
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| 147 | columns[FLAG].printEntry(stream,this->flagText); |
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| 148 | stream << std::endl; |
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| 149 | } |
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[103] | 150 | } |
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[378] | 151 | //-------------------------------------------------------------------- |
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| 152 | |
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| 153 | void Detection::outputDetectionText(std::ostream &stream, |
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| 154 | std::vector<Column::Col> columns, |
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| 155 | int idNumber) |
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| 156 | { |
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| 157 | /** |
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| 158 | * Print to a stream the relevant details of a detected object. |
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| 159 | * This does not include any WCS parameters, only pixel positions & extent, |
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| 160 | * and flux info (FTOT, FPEAK, SNRPEAK). |
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| 161 | * Also prints a counter, provided as an input. |
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| 162 | * |
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| 163 | * \param stream Where to print. |
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| 164 | * \param columns The set of Columns::Col objects that define the |
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| 165 | * columns to be printed. |
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| 166 | * \param idNumber The number that acts as a counter in the first column. |
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| 167 | */ |
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| 168 | |
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| 169 | if(columns.size()!=Column::numColumnsLog){ |
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| 170 | std::stringstream errmsg; |
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| 171 | errmsg << "columnSet used has wrong number of columns (" |
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| 172 | << columns.size() << ")\nshould be " |
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| 173 | << Column::numColumnsLog <<".\n"; |
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| 174 | duchampError("outputDetectionText",errmsg.str()); |
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[139] | 175 | } |
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[378] | 176 | else{ |
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| 177 | stream << std::setfill(' '); |
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| 178 | stream.setf(std::ios::fixed); |
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| 179 | columns[lNUM].printEntry(stream,idNumber); |
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| 180 | columns[lX].printEntry(stream,this->getXcentre() + this->xSubOffset); |
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| 181 | columns[lY].printEntry(stream,this->getYcentre() + this->ySubOffset); |
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| 182 | columns[lZ].printEntry(stream,this->getZcentre() + this->zSubOffset); |
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| 183 | columns[lFTOT].printEntry(stream,this->totalFlux); |
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| 184 | columns[lFPEAK].printEntry(stream,this->peakFlux); |
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| 185 | columns[lSNRPEAK].printEntry(stream,this->peakSNR); |
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| 186 | columns[lX1].printEntry(stream,this->getXmin() + this->xSubOffset); |
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| 187 | columns[lX2].printEntry(stream,this->getXmax() + this->xSubOffset); |
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| 188 | columns[lY1].printEntry(stream,this->getYmin() + this->ySubOffset); |
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| 189 | columns[lY2].printEntry(stream,this->getYmax() + this->ySubOffset); |
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| 190 | columns[lZ1].printEntry(stream,this->getZmin() + this->zSubOffset); |
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| 191 | columns[lZ2].printEntry(stream,this->getZmax() + this->zSubOffset); |
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| 192 | columns[lNPIX].printEntry(stream,this->pixelArray.getSize()); |
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| 193 | stream<<std::endl; |
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| 194 | } |
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| 195 | } |
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| 196 | //-------------------------------------------------------------------- |
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| 197 | |
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| 198 | void Detection::outputDetectionTextHeaderFull(std::ostream &stream, |
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| 199 | std::vector<Column::Col> columns) |
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| 200 | { |
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| 201 | /** |
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| 202 | * Prints to a stream the column headers to match the output |
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| 203 | * generated by outputDetectionText or outputDetectionTextWCS |
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| 204 | * The exact columns depend on the std::vector<Col>. |
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| 205 | * |
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| 206 | * NOTE: It prints all columns, including all the different pixel |
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| 207 | * centre options and all FLUX columns. |
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| 208 | * |
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| 209 | * \param stream Where to print. |
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| 210 | * \param columns The set of Columns::Col objects that define the |
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| 211 | * columns to be printed. |
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| 212 | */ |
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| 213 | |
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| 214 | stream << std::setfill(' '); |
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| 215 | for(int i=0;i<columns.size();i++) columns[i].printDash(stream); |
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[145] | 216 | stream << std::endl; |
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[378] | 217 | for(int i=0;i<columns.size();i++) columns[i].printTitle(stream); |
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| 218 | stream << std::endl; |
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| 219 | for(int i=0;i<columns.size();i++) columns[i].printUnits(stream); |
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| 220 | stream << std::endl; |
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| 221 | for(int i=0;i<columns.size();i++) columns[i].printDash(stream); |
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| 222 | stream << std::endl; |
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[139] | 223 | } |
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[378] | 224 | //-------------------------------------------------------------------- |
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[3] | 225 | |
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[378] | 226 | void Detection::outputDetectionTextWCSFull(std::ostream &stream, |
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| 227 | std::vector<Column::Col> columns) |
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| 228 | { |
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| 229 | /** |
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| 230 | * Prints to a stream the relevant details of a detected object, |
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| 231 | * including the WCS parameters, which need to have been calculated. |
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| 232 | * If they have not (given by the isWCS() function), then the |
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| 233 | * WCS-related outputs are left blank. |
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| 234 | * This function prints all the different versions of the centre |
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| 235 | * pixel values, and all different flux quantities. |
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| 236 | * \param stream Where to print. |
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| 237 | * \param columns The set of Columns::Col objects that define the |
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| 238 | * columns to be printed. |
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| 239 | */ |
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[300] | 240 | |
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[378] | 241 | if(columns.size()!=Column::numColumns){ |
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| 242 | std::stringstream errmsg; |
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| 243 | errmsg << "columnSet used has wrong number of columns (" |
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| 244 | << columns.size() << ")\nshould be " |
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| 245 | << Column::numColumns << ".\n"; |
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| 246 | duchampError("outputDetectionTextWCS",errmsg.str()); |
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| 247 | } |
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| 248 | else{ |
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| 249 | stream.setf(std::ios::fixed); |
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| 250 | columns[NUM].printEntry(stream,this->id); |
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| 251 | columns[NAME].printEntry(stream,this->name); |
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| 252 | columns[X].printEntry(stream,this->getXcentre() + this->xSubOffset); |
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| 253 | columns[Y].printEntry(stream,this->getYcentre() + this->ySubOffset); |
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| 254 | columns[Z].printEntry(stream,this->getZcentre() + this->zSubOffset); |
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| 255 | if(this->flagWCS){ |
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| 256 | columns[RA].printEntry(stream,this->raS); |
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| 257 | columns[DEC].printEntry(stream,this->decS); |
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| 258 | if(this->specOK) columns[VEL].printEntry(stream,this->vel); |
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| 259 | // else printSpace(stream,columns[VEL].getWidth()); |
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| 260 | else columns[VEL].printEntry(stream,0.); |
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| 261 | columns[WRA].printEntry(stream,this->raWidth); |
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| 262 | columns[WDEC].printEntry(stream,this->decWidth); |
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| 263 | if(this->specOK) columns[WVEL].printEntry(stream,this->velWidth); |
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| 264 | else columns[WVEL].printEntry(stream,0.); |
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| 265 | } |
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| 266 | else for(int i=RA;i<=WVEL;i++) columns[i].printBlank(stream); |
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| 267 | columns[FINT].printEntry(stream,this->intFlux); |
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| 268 | columns[FTOT].printEntry(stream,this->totalFlux); |
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| 269 | columns[FPEAK].printEntry(stream,this->peakFlux); |
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| 270 | columns[SNRPEAK].printEntry(stream,this->peakSNR); |
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| 271 | columns[X1].printEntry(stream,this->getXmin() + this->xSubOffset); |
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| 272 | columns[X2].printEntry(stream,this->getXmax() + this->xSubOffset); |
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| 273 | columns[Y1].printEntry(stream,this->getYmin() + this->ySubOffset); |
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| 274 | columns[Y2].printEntry(stream,this->getYmax() + this->ySubOffset); |
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| 275 | columns[Z1].printEntry(stream,this->getZmin() + this->zSubOffset); |
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| 276 | columns[Z2].printEntry(stream,this->getZmax() + this->zSubOffset); |
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| 277 | columns[NPIX].printEntry(stream,int(this->pixelArray.getSize())); |
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| 278 | columns[FLAG].printEntry(stream,this->flagText); |
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| 279 | columns[XAV].printEntry(stream,this->getXAverage() + this->xSubOffset); |
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| 280 | columns[YAV].printEntry(stream,this->getYAverage() + this->ySubOffset); |
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| 281 | columns[ZAV].printEntry(stream,this->getZAverage() + this->zSubOffset); |
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| 282 | columns[XCENT].printEntry(stream,this->getXCentroid() + this->xSubOffset); |
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| 283 | columns[YCENT].printEntry(stream,this->getYCentroid() + this->ySubOffset); |
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| 284 | columns[ZCENT].printEntry(stream,this->getZCentroid() + this->zSubOffset); |
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| 285 | columns[XPEAK].printEntry(stream,this->getXPeak() + this->xSubOffset); |
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| 286 | columns[YPEAK].printEntry(stream,this->getYPeak() + this->ySubOffset); |
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| 287 | columns[ZPEAK].printEntry(stream,this->getZPeak() + this->zSubOffset); |
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| 288 | stream << std::endl; |
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| 289 | } |
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[300] | 290 | } |
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[378] | 291 | //-------------------------------------------------------------------- |
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[300] | 292 | |
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[378] | 293 | std::string Detection::outputLabelWCS() |
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| 294 | { |
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| 295 | /** |
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| 296 | * Prints to a std::string the WCS position and velocity |
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| 297 | * information of the Detection, as well as the ID number and any |
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| 298 | * flags. |
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| 299 | * Assumes the WCS parameters of the object have been calculated. |
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| 300 | * If they have not (given by the isWCS() function), then the |
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| 301 | * WCS-related outputs are left blank. |
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| 302 | * Returns the string. |
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| 303 | */ |
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| 304 | std::stringstream ss; |
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| 305 | ss << "#" << std::setfill('0') << std::setw(3) << this->id << ": "; |
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| 306 | ss << this->name ; |
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| 307 | if(this->getFlagText()!="") |
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| 308 | ss << " [" << this->getFlagText() << "] "; |
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| 309 | else ss<< " "; |
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| 310 | ss << std::setfill(' '); |
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| 311 | ss << this->raS << ", "; |
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| 312 | ss << this->decS; |
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| 313 | if(this->specOK){ |
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| 314 | ss << std::setprecision(this->velPrec); |
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| 315 | ss.setf(std::ios::fixed); |
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| 316 | ss << ", " << this->vel << " " << this->specUnits; |
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| 317 | } |
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[300] | 318 | |
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[378] | 319 | return ss.str(); |
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[300] | 320 | |
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[378] | 321 | } |
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| 322 | //-------------------------------------------------------------------- |
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[265] | 323 | |
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[378] | 324 | std::string Detection::outputLabelFluxes() |
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| 325 | { |
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| 326 | /** |
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| 327 | * Prints to a std::string the fluxes of the object, both |
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| 328 | * integrated/total and peak, as well as the peak S/N value. |
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| 329 | * Assumes the WCS parameters of the object have been calculated. |
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| 330 | * If they have not (given by the isWCS() function), then the ID |
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| 331 | * number and the total/peak/SNR values are returned. |
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| 332 | * /return The string. |
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| 333 | */ |
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| 334 | |
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| 335 | std::stringstream ss; |
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| 336 | ss.setf(std::ios::fixed); |
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[265] | 337 | if(this->flagWCS){ |
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[378] | 338 | ss << std::setprecision(this->fintPrec); |
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| 339 | ss << "F\\dint\\u=" << this->intFlux << " " << this->intFluxUnits; |
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| 340 | ss << std::setprecision(this->fpeakPrec); |
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| 341 | ss << ", F\\dpeak\\u=" << this->peakFlux << " " << this->fluxUnits; |
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| 342 | ss << std::setprecision(this->snrPrec); |
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| 343 | ss << ", S/N\\dmax\\u=" << this->peakSNR; |
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[265] | 344 | } |
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[378] | 345 | else{ |
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| 346 | ss << "#" << std::setfill('0') << std::setw(3) << this->id << ": "; |
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| 347 | ss << std::setprecision(this->fintPrec); |
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| 348 | ss << "F\\dtot\\u=" << this->totalFlux << this->fluxUnits; |
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| 349 | ss << std::setprecision(this->fpeakPrec); |
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| 350 | ss << ", F\\dpeak\\u=" << this->peakFlux << this->fluxUnits; |
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| 351 | ss << std::setprecision(this->snrPrec); |
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| 352 | ss << ", S/N\\dmax\\u=" << this->peakSNR; |
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| 353 | } |
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| 354 | std::string output = ss.str(); |
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[265] | 355 | |
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[378] | 356 | return output; |
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[367] | 357 | } |
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[378] | 358 | //-------------------------------------------------------------------- |
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[3] | 359 | |
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[378] | 360 | std::string Detection::outputLabelWidths() |
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| 361 | { |
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| 362 | /** |
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| 363 | * Prints to a std::string the widths of the object in position |
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| 364 | * and velocity. |
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| 365 | * Assumes the WCS parameters of the object have been calculated. |
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| 366 | * If they have not (given by the isWCS() function), then a string of |
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| 367 | * length 0 is returned. |
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| 368 | * \returns The string. |
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| 369 | */ |
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[3] | 370 | |
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[378] | 371 | std::string output; |
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| 372 | if(this->flagWCS){ |
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| 373 | std::stringstream ss; |
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| 374 | ss.setf(std::ios::fixed); |
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| 375 | ss << std::setprecision(this->posPrec); |
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| 376 | ss << "w_" << this->lngtype <<"=" << this->raWidth; |
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| 377 | ss << ", w_" << this->lattype <<"=" << this->decWidth; |
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| 378 | if(this->specOK){ |
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| 379 | ss << std::setprecision(this->velPrec); |
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| 380 | ss << ", w_Vel=" << this->velWidth << " " << this->specUnits; |
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| 381 | } |
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| 382 | output = ss.str(); |
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| 383 | } |
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| 384 | else output = this->outputLabelFluxes(); |
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[3] | 385 | |
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[378] | 386 | return output; |
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[103] | 387 | } |
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[378] | 388 | //-------------------------------------------------------------------- |
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[103] | 389 | |
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[378] | 390 | std::string Detection::outputLabelPix() |
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| 391 | { |
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| 392 | /** |
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| 393 | * Prints to a std::string the pixel centres and extents of a |
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| 394 | * detected object. Returns the string. |
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| 395 | */ |
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[103] | 396 | |
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[282] | 397 | std::stringstream ss; |
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| 398 | ss.setf(std::ios::fixed); |
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[378] | 399 | ss << "Centre: "; |
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| 400 | ss << std::setprecision(this->xyzPrec) << std::setfill(' '); |
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| 401 | ss <<"(" << this->getXcentre() + this->xSubOffset; |
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| 402 | ss <<", " << this->getYcentre() + this->ySubOffset; |
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| 403 | ss <<", " << this->getZcentre() + this->zSubOffset << ")"; |
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| 404 | ss <<", Size: "<< this->pixelArray.getSize() << " voxels, "; |
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| 405 | ss <<"Range: ["; |
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| 406 | ss << this->getXmin() + this->xSubOffset |
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| 407 | <<":" << this->getXmax() + this->xSubOffset; |
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| 408 | ss <<", " << this->getYmin() + this->ySubOffset |
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| 409 | <<":" << this->getYmax() + this->ySubOffset; |
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[356] | 410 | if(this->specOK){ |
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[378] | 411 | ss <<", " << this->getZmin() + this->zSubOffset |
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| 412 | <<":" << this->getZmax() + this->zSubOffset; |
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[282] | 413 | } |
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[378] | 414 | ss<< "]"; |
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| 415 | |
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| 416 | return ss.str(); |
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[282] | 417 | } |
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| 418 | |
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| 419 | |
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[3] | 420 | } |
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