source: trunk/src/Cubes/readRecon.cc @ 220

#include <iostream>
#include <sstream>
#include <string>
#include <wcs.h>
#include <wcshdr.h>
#define WCSLIB_GETWCSTAB // define this so that we don't try to redefine wtbarr
                         // (this is a problem when using gcc v.4+
#include <fitsio.h>
#include <duchamp.hh>
#include <Cubes/cubes.hh>

int Cube::readReconCube()
{
  /** 
   *  A way to read in a previously reconstructed array, corresponding 
   *    to the requested parameters, or in the filename given by reconFile.
   *   Performs various tests to make sure there are no clashes between 
   *    the requested parameters and those stored in the header of the 
   *    FITS file. Also test to make sure that the size (and subsection, 
   *    if applicable) of the array is the same.
   */


  int status = 0;

  if(!this->par.getFlagReconExists()){
    duchampWarning("readReconCube",
                   "reconExists flag is not set. Not reading anything in!\n");
    return FAILURE;
  }
  else if(!this->par.getFlagATrous()){
    duchampWarning("readReconCube",
                   "flagATrous is not set. Don't need to read in recon array!\n");
    return FAILURE;
  }
  else {

    // Check to see whether the parameters reconFile and/or residFile are defined
    bool reconGood = false;
    int exists;
    std::stringstream errmsg;
    if(this->par.getReconFile() != ""){
      reconGood = true;
      fits_file_exists(this->par.getReconFile().c_str(),&exists,&status);
      if(exists<=0){
        fits_report_error(stderr, status);
        errmsg<< "Cannot find requested ReconFile. Trying with parameters.\n"
              << "Bad reconFile was: "<<this->par.getReconFile() << std::endl;
        duchampWarning("readReconCube", errmsg.str());
        reconGood = false;
      }
    }
    else{
      errmsg<< "ReconFile not specified. Working out name from parameters.\n";
    }
  
    if(!reconGood){ // if bad, need to look at parameters

      string reconFile = this->par.outputReconFile();
      errmsg << "Trying file " << reconFile << std::endl;
      duchampWarning("readReconCube", errmsg.str() );
      reconGood = true;
      fits_file_exists(reconFile.c_str(),&exists,&status);
      if(exists<=0){
        fits_report_error(stderr, status);
        duchampWarning("readReconCube","ReconFile not present.\n");
        reconGood = false;
      }

      if(reconGood){ 
        // were able to open this new file -- use this, so reset the 
        //  relevant parameter
        this->par.setReconFile(reconFile);
      }
      else { // if STILL bad, give error message and exit.
        duchampError("readReconCube","Cannot find reconstructed file.\n");
        return FAILURE;
      }

    }

    // if we get to here, reconGood is true (ie. file is open);

    status=0;
    fitsfile *fptr;
    fits_open_file(&fptr,this->par.getReconFile().c_str(),READONLY,&status);
    short int maxdim=3;
    long *fpixel = new long[maxdim];
    for(int i=0;i<maxdim;i++) fpixel[i]=1;
    long *dimAxesNew = new long[maxdim];
    for(int i=0;i<maxdim;i++) dimAxesNew[i]=1;
    long nelements;
    int bitpix,numAxesNew,anynul;

    status = 0;
    fits_get_img_param(fptr, maxdim, &bitpix, &numAxesNew, dimAxesNew, &status);
    if(status){
      fits_report_error(stderr, status);
      return FAILURE;
    }

    if(numAxesNew != this->numDim){
      std::stringstream errmsg;
      errmsg << "Reconstructed cube has a different number of axes to original!"
             << " (" << numAxesNew << " cf. " << this->numDim << ")\n";
      duchampError("readReconCube", errmsg.str());
      return FAILURE;
    }

    for(int i=0;i<numAxesNew;i++){
      if(dimAxesNew[i]!=this->axisDim[i]){
        std::stringstream errmsg;
        errmsg << "Reconstructed cube has different axis dimensions to original!"
               << "\nAxis #" << i+1 << " has size " << dimAxesNew[i] 
               << " cf. " << this->axisDim[i] <<" in original.\n";      
        duchampError("readReconCube", errmsg.str());
        return FAILURE;
      }
    }

    char *comment = new char[80];

    if(this->par.getFlagSubsection()){
      char *subsection = new char[80];
      status = 0;
      fits_read_key(fptr, TSTRING, (char *)keyword_subsection.c_str(), 
                    subsection, comment, &status);
      if(status){
        duchampError("readReconCube", 
                     "subsection keyword not present in reconFile.\n");
        return FAILURE;
      }
      else{
        if(this->par.getSubsection() != subsection){
          std::stringstream errmsg;
          errmsg << "subsection keyword in reconFile (" << subsection 
                 << ") does not match that requested (" 
                 << this->par.getSubsection() << ").\n";
          duchampError("readReconCube", errmsg.str());
          return FAILURE;
        }
      }
      delete subsection;
    }

    int scaleMin,filterCode,reconDim;
    float snrRecon;
    status = 0;
    fits_read_key(fptr, TINT, (char *)keyword_reconDim.c_str(), 
                  &reconDim, comment, &status);
    if(reconDim != this->par.getReconDim()){
      std::stringstream errmsg;
      errmsg << "reconDim keyword in reconFile (" << reconDim
             << ") does not match that requested (" 
             << this->par.getReconDim() << ").\n";
      duchampError("readReconCube", errmsg.str());
      return FAILURE;
    }
    status = 0;
    fits_read_key(fptr, TINT, (char *)keyword_filterCode.c_str(), 
                  &filterCode, comment, &status);
    if(filterCode != this->par.getFilterCode()){
      std::stringstream errmsg;
      errmsg << "filterCode keyword in reconFile (" << filterCode
             << ") does not match that requested (" 
             << this->par.getFilterCode() << ").\n";
      duchampError("readReconCube", errmsg.str());
      return FAILURE;
    }
    status = 0;
    fits_read_key(fptr, TFLOAT, (char *)keyword_snrRecon.c_str(), 
                  &snrRecon, comment, &status);
    if(snrRecon != this->par.getAtrousCut()){
      std::stringstream errmsg;
      errmsg << "snrRecon keyword in reconFile (" << snrRecon
             << ") does not match that requested (" 
             << this->par.getAtrousCut() << ").\n";
      duchampError("readReconCube", errmsg.str());
      return FAILURE;
    }
    status = 0;
    fits_read_key(fptr, TINT, (char *)keyword_scaleMin.c_str(), 
                  &scaleMin, comment, &status);
    if(scaleMin != this->par.getMinScale()){
      std::stringstream errmsg;
      errmsg << "scaleMin keyword in reconFile (" << scaleMin
             << ") does not match that requested (" 
             << this->par.getMinScale() << ").\n";
      duchampError("readReconCube", errmsg.str());
      return FAILURE;
    }
  
    //
    // If we get to here, the reconFile exists and matches the atrous 
    //  parameters the user has requested.

    status = 0;
    fits_read_pix(fptr, TFLOAT, fpixel, this->numPixels, NULL, 
                  this->recon, &anynul, &status);
  
    status = 0;
    fits_close_file(fptr, &status);
    if (status){
      duchampWarning("readReconCube", "Error closing file: ");
      fits_report_error(stderr, status);
    }

    // We don't want to write out the recon or resid files at the end
    this->par.setFlagOutputRecon(false);
    this->par.setFlagOutputResid(false);

    // The reconstruction is done -- set the appropriate flag
    this->reconExists = true;

    return SUCCESS;
  }
}