[71] | 1 | #include <iostream> |
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| 2 | #include <sstream> |
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| 3 | #include <string> |
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| 4 | #include <wcs.h> |
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| 5 | #include <wcshdr.h> |
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[103] | 6 | #define WCSLIB_GETWCSTAB // define this so that we don't try and redefine wtbarr |
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| 7 | // (this is a problem when using gcc v.4+ |
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[71] | 8 | #include <fitsio.h> |
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| 9 | #include <duchamp.hh> |
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| 10 | #include <Cubes/cubes.hh> |
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| 11 | |
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| 12 | int Cube::readReconCube() |
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| 13 | { |
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[86] | 14 | /** |
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| 15 | * Cube::readReconCube() |
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| 16 | * |
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[139] | 17 | * A way to read in a previously reconstructed array, corresponding |
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| 18 | * to the requested parameters, or in the filename given by reconFile. |
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| 19 | * Performs various tests to make sure there are no clashes between |
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| 20 | * the requested parameters and those stored in the header of the |
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| 21 | * FITS file. Also test to make sure that the size (and subsection, |
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| 22 | * if applicable) of the array is the same. |
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[86] | 23 | */ |
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[71] | 24 | |
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[86] | 25 | |
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[71] | 26 | int status = 0; |
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| 27 | |
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| 28 | // Check to see whether the parameters reconFile and/or residFile are defined. |
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| 29 | bool reconGood = false; |
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| 30 | int exists; |
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[139] | 31 | std::stringstream errmsg; |
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[71] | 32 | if(this->par.getReconFile() != ""){ |
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| 33 | reconGood = true; |
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| 34 | fits_file_exists(this->par.getReconFile().c_str(),&exists,&status); |
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| 35 | if(exists<=0){ |
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| 36 | fits_report_error(stderr, status); |
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[120] | 37 | errmsg<< "Cannot find requested ReconFile. Trying with parameters.\n" |
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| 38 | << "Bad reconFile was: "<<this->par.getReconFile() << std::endl; |
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| 39 | duchampWarning("readReconCube", errmsg.str()); |
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[71] | 40 | reconGood = false; |
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| 41 | } |
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| 42 | } |
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| 43 | else{ |
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[139] | 44 | errmsg<< "ReconFile not specified. Working out name from parameters.\n"; |
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[71] | 45 | } |
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| 46 | |
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| 47 | if(!reconGood){ // if bad, need to look at parameters |
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| 48 | |
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[103] | 49 | string reconFile = this->par.outputReconFile(); |
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[139] | 50 | errmsg << "Trying file " << reconFile << std::endl; |
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| 51 | duchampWarning("readReconCube", errmsg.str() ); |
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[71] | 52 | reconGood = true; |
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| 53 | fits_file_exists(reconFile.c_str(),&exists,&status); |
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| 54 | if(exists<=0){ |
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| 55 | fits_report_error(stderr, status); |
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[120] | 56 | duchampWarning("readReconCube","ReconFile not present.\n"); |
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[71] | 57 | reconGood = false; |
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| 58 | } |
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| 59 | |
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[139] | 60 | if(reconGood){ |
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| 61 | // were able to open this new file -- use this, so reset the relevant parameter |
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[71] | 62 | this->par.setReconFile(reconFile); |
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| 63 | } |
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| 64 | else { // if STILL bad, give error message and exit. |
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[120] | 65 | duchampError("readReconCube","Cannot find reconstructed file.\n"); |
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[71] | 66 | return FAILURE; |
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| 67 | } |
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| 68 | |
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| 69 | } |
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| 70 | |
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| 71 | // if we get to here, reconGood is true (ie. file is open); |
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| 72 | status=0; |
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[104] | 73 | fitsfile *fptr; |
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[71] | 74 | fits_open_file(&fptr,this->par.getReconFile().c_str(),READONLY,&status); |
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| 75 | short int maxdim=3; |
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| 76 | long *fpixel = new long[maxdim]; |
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| 77 | for(int i=0;i<maxdim;i++) fpixel[i]=1; |
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| 78 | long *dimAxesNew = new long[maxdim]; |
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| 79 | for(int i=0;i<maxdim;i++) dimAxesNew[i]=1; |
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| 80 | long nelements; |
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| 81 | int bitpix,numAxesNew,anynul; |
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| 82 | |
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| 83 | status = 0; |
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| 84 | fits_get_img_param(fptr, maxdim, &bitpix, &numAxesNew, dimAxesNew, &status); |
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| 85 | if(status){ |
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| 86 | fits_report_error(stderr, status); |
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| 87 | return FAILURE; |
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| 88 | } |
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| 89 | |
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| 90 | if(numAxesNew != this->numDim){ |
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[120] | 91 | std::stringstream errmsg; |
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| 92 | errmsg << " Reconstructed cube has a different number of axes to original! (" |
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| 93 | << numAxesNew << " cf. " << this->numDim << ")\n"; |
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| 94 | duchampError("readReconCube", errmsg.str()); |
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[71] | 95 | return FAILURE; |
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| 96 | } |
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| 97 | |
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| 98 | for(int i=0;i<numAxesNew;i++){ |
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| 99 | if(dimAxesNew[i]!=this->axisDim[i]){ |
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[120] | 100 | std::stringstream errmsg; |
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| 101 | errmsg << "Reconstructed cube has different axis dimensions to original!\n" |
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| 102 | << " Axis #" << i+1 << " has size " << dimAxesNew[i] |
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| 103 | << " cf. " << this->axisDim[i] <<" in original.\n"; |
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| 104 | duchampError("readReconCube", errmsg.str()); |
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[71] | 105 | return FAILURE; |
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| 106 | } |
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[105] | 107 | } |
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[71] | 108 | |
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[104] | 109 | char *comment = new char[80]; |
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[105] | 110 | |
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| 111 | if(this->par.getFlagSubsection()){ |
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| 112 | char *subsection = new char[80]; |
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| 113 | status = 0; |
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| 114 | fits_read_key(fptr, TSTRING, (char *)keyword_subsection.c_str(), subsection, comment, &status); |
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| 115 | if(status){ |
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[120] | 116 | duchampError("readReconCube", "subsection keyword not present in reconFile.\n"); |
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[105] | 117 | return FAILURE; |
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| 118 | } |
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| 119 | else{ |
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| 120 | if(this->par.getSubsection() != subsection){ |
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[120] | 121 | std::stringstream errmsg; |
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| 122 | errmsg << "subsection keyword in reconFile (" << subsection |
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| 123 | << ") does not match that requested (" << this->par.getSubsection() |
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| 124 | << ").\n"; |
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| 125 | duchampError("readReconCube", errmsg.str()); |
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[105] | 126 | return FAILURE; |
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| 127 | } |
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| 128 | } |
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| 129 | delete subsection; |
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| 130 | } |
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| 131 | |
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[104] | 132 | int scaleMin,filterCode,reconDim; |
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| 133 | float snrRecon; |
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| 134 | status = 0; |
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| 135 | fits_read_key(fptr, TINT, (char *)keyword_reconDim.c_str(), &reconDim, comment, &status); |
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| 136 | if(reconDim != this->par.getReconDim()){ |
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[120] | 137 | std::stringstream errmsg; |
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| 138 | errmsg << "reconDim keyword in reconFile (" << reconDim |
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| 139 | << ") does not match that requested (" << this->par.getReconDim() << ").\n"; |
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| 140 | duchampError("readReconCube", errmsg.str()); |
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[104] | 141 | return FAILURE; |
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| 142 | } |
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| 143 | status = 0; |
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| 144 | fits_read_key(fptr, TINT, (char *)keyword_filterCode.c_str(), &filterCode, comment, &status); |
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| 145 | if(filterCode != this->par.getFilterCode()){ |
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[120] | 146 | std::stringstream errmsg; |
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| 147 | errmsg << "filterCode keyword in reconFile (" << filterCode |
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| 148 | << ") does not match that requested (" << this->par.getFilterCode() << ").\n"; |
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| 149 | duchampError("readReconCube", errmsg.str()); |
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[104] | 150 | return FAILURE; |
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| 151 | } |
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| 152 | status = 0; |
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| 153 | fits_read_key(fptr, TFLOAT, (char *)keyword_snrRecon.c_str(), &snrRecon, comment, &status); |
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| 154 | if(snrRecon != this->par.getAtrousCut()){ |
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[120] | 155 | std::stringstream errmsg; |
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| 156 | errmsg << "snrRecon keyword in reconFile (" << snrRecon |
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| 157 | << ") does not match that requested (" << this->par.getAtrousCut() << ").\n"; |
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| 158 | duchampError("readReconCube", errmsg.str()); |
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[104] | 159 | return FAILURE; |
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| 160 | } |
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| 161 | status = 0; |
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| 162 | fits_read_key(fptr, TINT, (char *)keyword_scaleMin.c_str(), &scaleMin, comment, &status); |
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| 163 | if(scaleMin != this->par.getMinScale()){ |
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[120] | 164 | std::stringstream errmsg; |
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| 165 | errmsg << "scaleMin keyword in reconFile (" << scaleMin |
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| 166 | << ") does not match that requested (" << this->par.getMinScale() << ").\n"; |
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| 167 | duchampError("readReconCube", errmsg.str()); |
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[104] | 168 | return FAILURE; |
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| 169 | } |
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| 170 | |
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| 171 | // |
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| 172 | // If we get to here, the reconFile exists and matches the atrous parameters the user has requested. |
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| 173 | // |
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| 174 | |
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[71] | 175 | float *reconArray = new float[this->numPixels]; |
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[103] | 176 | status = 0; |
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[71] | 177 | fits_read_pix(fptr, TFLOAT, fpixel, this->numPixels, NULL, reconArray, &anynul, &status); |
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| 178 | this->saveRecon(reconArray,this->numPixels); |
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| 179 | |
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[103] | 180 | status = 0; |
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[71] | 181 | fits_close_file(fptr, &status); |
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| 182 | if (status){ |
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[120] | 183 | duchampWarning("readReconCube", "Error closing file: "); |
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[71] | 184 | fits_report_error(stderr, status); |
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| 185 | } |
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| 186 | |
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| 187 | // We don't want to write out the recon or resid files at the end |
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| 188 | this->par.setFlagOutputRecon(false); |
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| 189 | this->par.setFlagOutputResid(false); |
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| 190 | |
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| 191 | // The reconstruction is done -- set the appropriate flag |
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| 192 | this->reconExists = true; |
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| 193 | |
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| 194 | return SUCCESS; |
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| 195 | } |
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