source: trunk/src/Cubes/VOTable.cc @ 965

// -----------------------------------------------------------------------
// VOTable.cc: Output of the detected objects to a VOTable
// -----------------------------------------------------------------------
// Copyright (C) 2006, Matthew Whiting, ATNF
//
// This program is free software; you can redistribute it and/or modify it
// under the terms of the GNU General Public License as published by the
// Free Software Foundation; either version 2 of the License, or (at your
// option) any later version.
//
// Duchamp is distributed in the hope that it will be useful, but WITHOUT
// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
// FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
// for more details.
//
// You should have received a copy of the GNU General Public License
// along with Duchamp; if not, write to the Free Software Foundation,
// Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA
//
// Correspondence concerning Duchamp may be directed to:
//    Internet email: Matthew.Whiting [at] atnf.csiro.au
//    Postal address: Dr. Matthew Whiting
//                    Australia Telescope National Facility, CSIRO
//                    PO Box 76
//                    Epping NSW 1710
//                    AUSTRALIA
// -----------------------------------------------------------------------

#include <iostream>
#include <sstream>
#include <fstream>
#include <iomanip>
#include <string>
#include <vector>
#include <time.h>
#include <duchamp/param.hh>
#include <duchamp/fitsHeader.hh>
#include <duchamp/Cubes/cubes.hh> 
#include <duchamp/Detection/detection.hh>
#include <duchamp/Detection/columns.hh>
#include <duchamp/Utils/utils.hh>
#include <duchamp/Utils/VOParam.hh>
#include <duchamp/Utils/VOField.hh>

namespace duchamp
{
  
  void Cube::outputDetectionsVOTable(std::ostream &stream)
  {
    /// @details
    ///  Prints to a stream (provided) the list of detected objects in the cube
    ///   in a VOTable format.
    ///  Uses WCS information and assumes WCS parameters have been calculated for each
    ///   detected object. 
    /// \param stream The output stream to send the text to.
    
    stream<<"<?xml version=\"1.0\"?>\n";
    stream<<"<VOTABLE version=\"1.1\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n";
    stream<<" xsi:noNamespaceSchemaLocation=\"http://www.ivoa.net/xml/VOTable/VOTable/v1.1\">\n";

    stream<<"  <COOSYS ID=\"J2000\" equinox=\"J2000.\" epoch=\"J2000.\" system=\"eq_FK5\"/>\n";
    stream<<"  <RESOURCE name=\"Duchamp Output\">\n";
    stream<<"    <TABLE name=\"Detections\">\n";
    stream<<"      <DESCRIPTION>Detected sources and parameters from running the Duchamp source finder.</DESCRIPTION>\n";

    // PARAM section -- parts that are not entry-specific ie. apply to whole dataset
    std::vector<VOParam> paramList = this->par.getVOParams();
    for(std::vector<VOParam>::iterator param=paramList.begin();param<paramList.end();param++){
      stream << "      ";
      param->printParam(stream);
    }    


    if(this->fullCols.size()==0) this->setupColumns(); 
    // in case cols haven't been set -- need the column names

    std::string posUCD[4];
    if(makelower(this->fullCols[Column::RAJD].getName())=="ra"){
      posUCD[0] = "pos.eq.ra;meta.main";
      posUCD[2] = "phys.angSize;pos.eq.ra";
    }
    else{
      posUCD[0] = "pos.galactic.lat;meta.main";
      posUCD[2] = "phys.angSize;pos.galactic.lat";
    }
    if(makelower(this->fullCols[Column::DECJD].getName())=="dec"){
      posUCD[1] = "pos.eq.dec;meta.main";
      posUCD[3] = "phys.angSize;pos.eq.dec";
    }
    else{
      posUCD[1] = "pos.galactic.lon;meta.main";
      posUCD[3] = "phys.angSize;pos.galactic.lon";
    }

    std::vector<Column::Col>::iterator col;
    for(col=this->fullCols.begin();col<this->fullCols.end();col++){

      if(col->doCol("votable",this->head.isSpecOK())){
        // VOField field;
        // field.define(*col);
        VOField field(*col); 
        if(col->getType()==Column::RAJD)  field.setUCD(posUCD[0]);
        if(col->getType()==Column::WRA)   field.setUCD(posUCD[1]);
        if(col->getType()==Column::DECJD) field.setUCD(posUCD[2]);
        if(col->getType()==Column::WDEC)  field.setUCD(posUCD[3]);      
        stream << "      ";
        field.printField(stream);
      }

    }

    stream<<"      <DATA>\n"
          <<"        <TABLEDATA>\n";

    stream.setf(std::ios::fixed);  

    std::vector<Detection>::iterator obj;
    for(obj=this->objectList->begin();obj<this->objectList->end();obj++){

      stream<<"        <TR>\n";
      stream<<"          ";
      std::vector<Column::Col>::iterator col;
      for(col=this->fullCols.begin();col<this->fullCols.end();col++){
        if(col->doCol("votable",this->head.isSpecOK())){
          stream<<"<TD>";
          obj->printTableEntry(stream, *col);
          stream<<"</TD>";
        }
      }
      stream<<"\n";
      stream<<"        </TR>\n";

    }

    stream<<"        </TABLEDATA>\n";
    stream<<"      </DATA>\n";
    stream<<"    </TABLE>\n";
    stream<<"  </RESOURCE>\n";
    stream<<"</VOTABLE>\n";
    resetiosflags(std::ios::fixed);
  
  }




}