source: trunk/src/ATrous/atrous_1d_reconstruct.cc @ 177

#include <iostream>
#include <iomanip>
#include <math.h>
#include <duchamp.hh>
#include <ATrous/atrous.hh>
#include <Utils/utils.hh>

using std::endl;
using std::setw;

void atrous1DReconstruct(long &xdim, float *&input,float *&output, Param &par)
{
  /**
   *  atrous1DReconstruct(xdim, input, output, par)
   *
   *  A routine that uses the a trous wavelet method to reconstruct a 
   *   1-dimensional spectrum. 
   *  The Param object "par" contains all necessary info about the filter and 
   *   reconstruction parameters, although a Filter object has to be declared
   *   elsewhere previously.
   *  The input array is in "input", of length "xdim", and the reconstructed
   *   array is in "output".
   */


  extern Filter reconFilter;
  const float SNR_THRESH=par.getAtrousCut();
  const int MIN_SCALE=par.getMinScale();

  bool flagBlank=par.getFlagBlankPix();
  float blankPixValue = par.getBlankPixVal();
  int numScales = reconFilter.getNumScales(xdim);
  double *sigmaFactors = new double[numScales+1];
  for(int i=0;i<=numScales;i++){
    if(i<=reconFilter.maxFactor(1)) 
      sigmaFactors[i] = reconFilter.sigmaFactor(1,i);
    else sigmaFactors[i] = sigmaFactors[i-1] / sqrt(2.);
  }

  float mean,sigma,originalSigma,originalMean,oldsigma,newsigma;
  bool *isGood = new bool[xdim];
  for(int pos=0;pos<xdim;pos++) 
    isGood[pos] = !par.isBlank(input[pos]);

  float *coeffs = new float[xdim];
  float *wavelet = new float[xdim];

  for(int pos=0;pos<xdim;pos++) output[pos]=0.;

  int filterHW = reconFilter.width()/2;
  double *filter = new double[reconFilter.width()];
  for(int i=0;i<reconFilter.width();i++) filter[i] = reconFilter.coeff(i);


  // No trimming done in 1D case.

  int iteration=0;
  newsigma = 1.e9;
  do{
    if(par.isVerbose()) {
      std::cout << "Iteration #"<<++iteration<<":";
      printSpace(13);
    }
    // first, get the value of oldsigma and set it to the previous 
    //   newsigma value
    oldsigma = newsigma;
    // all other times round, we are transforming the residual array
    for(int i=0;i<xdim;i++)  coeffs[i] = input[i] - output[i];
    
    float *array = new float[xdim];
    int goodSize=0;
    for(int i=0;i<xdim;i++) if(isGood[i]) array[goodSize++] = input[i];
    findMedianStats(array,goodSize,originalMean,originalSigma);
    originalSigma /= correctionFactor; // correct from MADFM to sigma estimator
    delete [] array;

    int spacing = 1;
    for(int scale = 1; scale<=numScales; scale++){

      if(par.isVerbose()) {
        printBackSpace(12);
        std::cout << "Scale " << setw(2) << scale
                  << " /"     <<setw(2)  << numScales <<std::flush;
      }

      for(int xpos = 0; xpos<xdim; xpos++){
            // loops over each pixel in the image
        int pos = xpos;

        wavelet[pos] = coeffs[pos];
        
        if(!isGood[pos] )  wavelet[pos] = 0.;
        else{

          for(int xoffset=-filterHW; xoffset<=filterHW; xoffset++){
            int x = xpos + spacing*xoffset;

            while((x<0)||(x>=xdim)){
              if(x<0) x = 0 - x;                    // boundary conditions are
              else if(x>=xdim) x = 2*(xdim-1) - x;  //    reflection. 
            }

            int filterpos = (xoffset+filterHW);
            int oldpos = x;

            if(isGood[oldpos]) 
              wavelet[pos] -= filter[filterpos]*coeffs[oldpos];
              
          } //-> end of xoffset loop
        } //-> end of else{ ( from if(!isGood[pos])  )
            
      } //-> end of xpos loop

      // Need to do this after we've done *all* the convolving
      for(int pos=0;pos<xdim;pos++) coeffs[pos] = coeffs[pos] - wavelet[pos];

      // Have found wavelet coeffs for this scale -- now threshold
      if(scale>=MIN_SCALE){
        array = new float[xdim];
        goodSize=0;
        for(int pos=0;pos<xdim;pos++) 
          if(isGood[pos]) array[goodSize++] = wavelet[pos];
        findMedianStats(array,goodSize,mean,sigma);
        delete [] array;
        
        for(int pos=0;pos<xdim;pos++){
          // preserve the Blank pixel values in the output.
          if(!isGood[pos]) output[pos] = blankPixValue;
          else if( fabs(wavelet[pos]) > 
                   (mean+SNR_THRESH*originalSigma*sigmaFactors[scale]) )
            output[pos] += wavelet[pos];
        }
      }
 
      spacing *= 2;

    } //-> end of scale loop 

    for(int pos=0;pos<xdim;pos++) if(isGood[pos]) output[pos] += coeffs[pos];

    array = new float[xdim];
    goodSize=0;
    for(int i=0;i<xdim;i++)
      if(isGood[i]) array[goodSize++] = input[i] - output[i];
    findMedianStats(array,goodSize,mean,newsigma);
    newsigma /= correctionFactor; // correct from MADFM to sigma estimator.
    delete [] array;

    if(par.isVerbose()) printBackSpace(26);

  } while( (iteration==1) || 
           (fabs(oldsigma-newsigma)/newsigma > reconTolerance) );

  if(par.isVerbose()) std::cout << "Completed "<<iteration<<" iterations. ";

  delete [] coeffs;
  delete [] wavelet;
  delete [] isGood;
  delete [] filter;
  delete [] sigmaFactors;
}