source: trunk/docs/Guide.tex @ 1213

Last change on this file since 1213 was 1213, checked in by MatthewWhiting, 11 years ago

Documentation updates, plus incrementing the version number to 1.3.2

File size: 7.4 KB
Line 
1% -----------------------------------------------------------------------
2% Guide.tex: Base latex file for the User's Guide.
3% -----------------------------------------------------------------------
4% Copyright (C) 2006, Matthew Whiting, ATNF
5%
6% This program is free software; you can redistribute it and/or modify it
7% under the terms of the GNU General Public License as published by the
8% Free Software Foundation; either version 2 of the License, or (at your
9% option) any later version.
10%
11% Duchamp is distributed in the hope that it will be useful, but WITHOUT
12% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
13% FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
14% for more details.
15%
16% You should have received a copy of the GNU General Public License
17% along with Duchamp; if not, write to the Free Software Foundation,
18% Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA
19%
20% Correspondence concerning Duchamp may be directed to:
21%    Internet email: Matthew.Whiting [at] atnf.csiro.au
22%    Postal address: Dr. Matthew Whiting
23%                    Australia Telescope National Facility, CSIRO
24%                    PO Box 76
25%                    Epping NSW 1710
26%                    AUSTRALIA
27% -----------------------------------------------------------------------
28%\documentclass[11pt,a4paper]{article}
29\documentclass[10pt,a4paper]{article}
30%\documentclass[12pt,a4paper]{report}
31
32%%%%%% LINE SPACING %%%%%%%%%%%%
33\usepackage{setspace}
34\singlespacing
35%\onehalfspacing
36%\doublespacing
37
38%Define a test for doing PDF format -- use different code below
39\newif\ifPDF
40\ifx\pdfoutput\undefined\PDFfalse
41\else\ifnum\pdfoutput > 0 \PDFtrue
42     \else\PDFfalse
43     \fi
44\fi
45
46%\textwidth=165 mm
47%\textheight=245 mm
48%\topmargin=0 mm
49%\oddsidemargin=0 mm
50%\parindent=6 mm
51
52\usepackage{amsmath}
53\usepackage{amsfonts}
54\usepackage{xspace}
55\usepackage[sort]{natbib}
56\bibpunct[,]{(}{)}{;}{a}{}{,}
57%\usepackage{biblabelurl}
58
59%\newcommand{\secA}{\chapter}
60%\newcommand{\secB}{\section}
61%\newcommand{\secC}{\subsection}
62
63\newcommand{\secA}{\section}
64\newcommand{\secB}{\subsection}
65\newcommand{\secC}{\subsubsection}
66
67\newcommand{\version}{1.3.2}
68
69\newcommand{\eg}{e.g.\ }
70\newcommand{\ie}{i.e.\ }
71\newcommand{\hi}{H\textsc{i}\xspace}
72\newcommand{\hipass}{\textsc{hipass}\xspace}
73\newcommand{\duchamp}{\emph{Duchamp}\xspace}
74\newcommand{\atrous}{\textit{{\`a} trous}\xspace}
75\newcommand{\Atrous}{\textit{{\`A} trous}\xspace}
76\newcommand{\diff}{{\rm d}}
77\newcommand{\entrylabel}[1]{\mbox{\texttt{#1:}}\hfil}
78\newenvironment{entry}
79        {\begin{list}{}%
80                {\renewcommand{\makelabel}{\entrylabel}%
81                        \setlength{\leftmargin}{33mm}%
82                        \setlength{\labelwidth}{33mm}%
83                        \setlength{\labelsep}{0pt}%
84                        \setlength{\itemsep}{3pt}%
85                        \setlength{\parsep}{2pt}%
86                }%
87        }%
88{\end{list}}
89
90%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
91
92\newlength{\MyLen}
93\newcommand{\Lentrylabel}[1]{%
94  \settowidth{\MyLen}{\texttt{#1:}}%
95%  \setlength{\labelwidth}{30mm}%
96  \ifthenelse{\lengthtest{\MyLen > \labelwidth}}%
97    {\parbox[b]{\labelwidth}% term > labelwidth
98      {\makebox[0pt][l]{\texttt{#1:}}\\}}%
99    {\texttt{#1:}}% term < labelwidth
100    \hfil\relax}
101
102\newenvironment{Lentry}%
103               {\renewcommand{\entrylabel}{\Lentrylabel}\begin{entry}
104                   \setlength{\itemsep}{3pt}%
105%                  \setlength{\leftmargin}{25mm}%
106%                  \setlength{\itemindent}{0mm}%
107%                  \setlength{\listparindent}{0mm}%
108                   \setlength{\labelsep}{0mm}%
109               }%
110               {\end{entry}%
111               }
112
113%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
114
115\newcommand{\Mentrylabel}[1]%
116           {\raisebox{0pt}[1ex][0pt]{\makebox[\labelwidth][l]%
117               {\parbox[t]{\labelwidth}{\hspace{0pt}\texttt{#1}}}}}
118\newenvironment{Mentry}
119               {\renewcommand{\entrylabel}{\Mentrylabel}\begin{entry}%
120                   \setlength{\labelwidth}{33mm}%
121                   \setlength{\leftmargin}{35mm}%
122               }%
123               {\end{entry}%
124               }
125%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
126
127
128%%%%%%% FANCY HEADINGS %%%%%%%%%%
129%\usepackage{fancyheadings}
130%\pagestyle{fancyplain}
131%\addtolength{\headheight}{1.6pt}
132%\addtolength{\headwidth}{\marginparsep}
133%\addtolength{\headwidth}{\marginparwidth}
134%\renewcommand{\secAmark}[1]
135%                {\markboth{#1}{}}
136%\renewcommand{\secBmark}[1]
137%                {\markright{\thesection\ #1}}
138%\lhead[\fancyplain{}{\bfseries\thepage}]
139%      {\fancyplain{}{\bfseries\rightmark}}
140%\rhead[\fancyplain{}{\bfseries\leftmark}]
141%      {\fancyplain{}{\bfseries\thepage}}
142%\cfoot{}
143
144% If we are creating a PDF, use different options for graphicx, hyperref.
145\ifPDF
146  \usepackage[pdftex]{graphicx,color}
147  \usepackage[pdftex,bookmarks]{hyperref}
148  \hypersetup{colorlinks=true,%             
149              citecolor=red,%
150              filecolor=red,%
151              linkcolor=red,%
152              urlcolor=red,%
153              }
154\else
155  \usepackage[dvips]{graphicx}
156  \usepackage[dvips]{hyperref}
157\fi
158
159\usepackage{lscape}
160\usepackage[dvips]{rotating}
161%\rotdriver{dvips}
162
163\pagestyle{headings}
164\begin{document}
165
166\ifPDF
167\pdfbookmark[2]{Title Page}{title}
168\fi
169\newlength{\centreoff}
170\setlength{\centreoff}{-0.5\oddsidemargin}
171\addtolength{\centreoff}{0.5\evensidemargin}
172\thispagestyle{empty}
173\vspace*{\stretch{1}}
174\noindent\hspace*{\centreoff}%
175\makebox[0pt][l]{\begin{minipage}{\textwidth}
176\flushright
177{\Huge\bfseries Source Detection with \duchamp\\[2ex]}
178{\huge\bfseries A User's Guide
179
180}
181\noindent\rule[-1ex]{\textwidth}{3pt}
182\end{minipage}}
183
184\vspace{\stretch{1}}
185\noindent\hspace*{\centreoff}%
186\makebox[0pt][l]{\begin{minipage}{\textwidth}
187\flushright
188{\bfseries
189Matthew Whiting\\
190Australia Telescope National Facility\\
191CSIRO Astronomy \& Space Science\\[3ex]}
192Duchamp version~\version\\
193May 2, 2013
194\end{minipage}}
195
196\begin{figure}[!h]
197%\begin{center}
198\includegraphics[width=\textwidth]{cover_image}
199%\end{center}
200\end{figure}
201
202%\newpage
203\ifPDF
204\pdfbookmark[2]{Contents}{contents}
205\fi
206\tableofcontents
207
208\newpage
209\input{intro} %Introduction and getting going quickly
210\newpage
211\input{userInputs} %User Inputs
212\newpage
213\input{executionFlow} %What \duchamp is doing
214\newpage
215\input{sourceParameterisation} %Parameterisation of sources
216\newpage
217\input{outputs} %Outputs
218\newpage
219\newpage
220\input{hints} %Notes and hints on the use of \duchamp
221\newpage
222\input{future} %Future developments
223\newpage
224\input{acknowledgements} %Acknowledgements
225
226\newpage
227\ifPDF
228\pdfbookmark[1]{References}{references}
229\fi
230%\bibliographystyle{plainnat}
231%%\bibliographystyle{hapj}
232%%\bibliographystyle{plainnaturl}
233%%\bibliographystyle{mn2e}
234%%\bibliography{mnemonic,MasterBibliography}
235%\bibliography{guide}
236%%\bibliography{Guide-new}
237
238%\newpage
239%\ifPDF
240%\pdfbookmark[1]{References}{references}
241%\fi
242%\ifPDF
243\input{Guide-URL-bib}
244%\else
245%\input{Guide-noURL-bib}
246%\fi
247
248\appendix
249\newpage
250\input{app-install} %Obtaining and installing \duchamp
251\newpage
252\input{app-param} %Available parameters
253\newpage
254\input{app-paramEx} %Example parameter files
255\newpage
256\input{app-resultsEx} %Example results files
257\newpage
258\input{app-VOTable} %Example VOTable output
259\newpage
260\input{app-Karma} %Example Karma annotation file output
261\newpage
262\input{app-DS9} %Example DS9 region file output
263\newpage
264\input{app-casa} %Example CASA region file output
265\newpage
266\input{app-stats} %Robust statistics for a Normal distribution
267\newpage
268\input{app-waveletNoise} %How Gaussian noise changes with wavelet scale
269
270
271\end{document}
Note: See TracBrowser for help on using the repository browser.