[754] | 1 | #!/bin/bash |
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[148] | 2 | |
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[389] | 3 | version=`grep VERSION src/config.h | sed '/\"/s///' | sed '/\"/s///' | awk '{print $3}'` |
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[325] | 4 | |
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[361] | 5 | progname=./Duchamp-$version |
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[754] | 6 | dir=./verification |
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[338] | 7 | |
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[361] | 8 | numErrors=0 |
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[325] | 9 | |
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[952] | 10 | ndet=(5 5 5 5 1 1 5 5 5) |
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| 11 | number=("first" "second" "third" "fourth" "fifth" "sixth" "seventh" "eighth" "ninth") |
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[754] | 12 | explanation=("This is a simple sigma-clipping search" |
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| 13 | "This uses the FDR method" |
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| 14 | "This spatially smoothes the cube, then searches with simple sigma-clipping" |
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| 15 | "This reconstructs the cube, then searches with simple sigma-clipping" |
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| 16 | "This just uses a small subsection of the full cube, with simple searching" |
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| 17 | "This reconstructs the subsection, then searches with simple sigma-clipping" |
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[890] | 18 | "This does the same as the first, and grows detections" |
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[952] | 19 | "This does the same as the first, but with regular statistics instead of robust" |
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| 20 | "This does the same as the first, but changing the spectral type, units, and rest frequency") |
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| 21 | explanation2=("-" "-" "It should take a bit longer than the first two." "It should take a bit longer again" "-" "-" "-" "-" "-") |
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[754] | 22 | |
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[325] | 23 | ################################################################## |
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[754] | 24 | # Run the tests. |
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[325] | 25 | # First, test the results file, just looking at the number of sources |
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| 26 | # and their pixel positions. |
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| 27 | # This is to avoid precision problems with the WCS positions. |
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| 28 | # Second, test the entire log files. |
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| 29 | |
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[754] | 30 | for (( i=0; i<${#number[@]}; i++ )); do |
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| 31 | |
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| 32 | N=`expr $i + 1` |
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| 33 | in=${dir}/input${N} |
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| 34 | res=${dir}/results${N}.txt |
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| 35 | Sres=${dir}/stdResults${N}.txt |
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| 36 | log=${dir}/log${N}.txt |
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| 37 | Slog=${dir}/stdLog${N}.txt |
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[1062] | 38 | vot=${dir}/results${N}.xml |
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[1073] | 39 | Svot=${dir}/stdResults${N}.xml |
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| 40 | karma=${dir}/results${N}.ann |
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| 41 | Skarma=${dir}/stdResults${N}.ann |
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[148] | 42 | |
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[754] | 43 | echo "Running the ${number[i]} Duchamp test:" |
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| 44 | echo " [${explanation[i]}]" |
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| 45 | if (( ( $i == "2" ) || ( $i == "3" ) )); then |
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| 46 | echo " [${explanation2[i]}]" |
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[361] | 47 | fi |
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[754] | 48 | rm -f /tmp/duchampRes /tmp/duchampComp /tmp/duchamptest |
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| 49 | $progname -p $in > /tmp/duchamptest |
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| 50 | echo "Done. Comparison to standard result:" |
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| 51 | numDet=`grep "Total number" $res | cut -f 6 -d " "` |
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| 52 | if [ $numDet == ${ndet[i]} ]; then |
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[939] | 53 | tail -${numDet} $res | awk '{print $1,$3,$4,$5}' > /tmp/duchampRes |
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| 54 | tail -${numDet} $Sres | awk '{print $1,$3,$4,$5}' > /tmp/duchampComp |
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[754] | 55 | if [ `diff /tmp/duchampRes /tmp/duchampComp | wc -l` != 0 ]; then |
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| 56 | echo " Found correct number of sources, but positions differ." |
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| 57 | echo " ERROR: Differences in positions of sources:" |
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| 58 | diff -I"Results of the Duchamp source finder:" $res $Sres |
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| 59 | numErrors=`expr $numErrors + 1` |
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| 60 | else |
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| 61 | echo " All detections correct." |
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| 62 | fi |
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[325] | 63 | else |
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[754] | 64 | echo " ERROR. Wrong number of sources found." |
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| 65 | echo "Differences in results:" |
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| 66 | diff -I"Results of the Duchamp source finder:" $res $Sres |
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[361] | 67 | numErrors=$numErrors+1 |
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| 68 | fi |
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[1062] | 69 | |
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[325] | 70 | #Test the log files. |
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[1057] | 71 | if [ `diff -I"flagXOutput" -I"Duchamp" -I"spectraFile" $log $Slog | wc -l` == 0 ]; then |
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[754] | 72 | echo " Logfiles correct." |
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[604] | 73 | else |
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[754] | 74 | echo " ERROR: Differences in the log files:" |
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[1057] | 75 | diff -I"flagXOutput" -I"Duchamp" -I"spectraFile" $log $Slog |
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[754] | 76 | numErrors=`expr $numErrors + 1` |
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[604] | 77 | fi |
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| 78 | |
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[1062] | 79 | #Test the VOTable results. |
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| 80 | if [ `diff $vot $Svot | wc -l` == 0 ]; then |
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| 81 | echo " VOTables correct." |
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| 82 | else |
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| 83 | echo " ERROR: Differences in the VOTables:" |
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| 84 | diff $vot $Svot |
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| 85 | numErrors=`expr $numErrors + 1` |
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| 86 | fi |
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| 87 | |
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[1073] | 88 | #Test the Karma annotation files |
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| 89 | if [ `diff $karma $Skarma | wc -l` == 0 ]; then |
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| 90 | echo " Karma annoation files correct." |
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| 91 | else |
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| 92 | echo " ERROR: Differences in the Karma annotation files:" |
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| 93 | diff $karma $Skarma |
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| 94 | numErrors=`expr $numErrors + 1` |
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| 95 | fi |
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| 96 | |
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[754] | 97 | echo "" |
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| 98 | echo "" |
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| 99 | |
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| 100 | done |
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[604] | 101 | |
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[632] | 102 | ################################################################## |
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[325] | 103 | # Summarise the results |
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| 104 | # Either give the OK, or give some advice about what to do. |
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| 105 | |
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[278] | 106 | echo " " |
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[361] | 107 | if [ $numErrors == 0 ]; then |
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[325] | 108 | echo "No errors! Everything is working fine." |
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[354] | 109 | echo " " |
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| 110 | echo "Happy Finding! If you ever need to report a bug or request an upgrade, go to" |
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[327] | 111 | echo " http://svn.atnf.csiro.au/trac/duchamp/newticket" |
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[325] | 112 | else |
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| 113 | echo "There were some differences in the results compared to the standards." |
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| 114 | echo "Have a look at the diffs to see if they are trivial or not (eg. precision errors)." |
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[486] | 115 | echo "If they are more serious (e.g. wrong number of sources found), submit a bug report" |
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[327] | 116 | echo " at http://svn.atnf.csiro.au/trac/duchamp/newticket" |
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[361] | 117 | fi |
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