source: trunk/Makefile.in @ 1160

Last change on this file since 1160 was 1142, checked in by MatthewWhiting, 11 years ago

Ticket #131: Enabling the writing of the moment-0 mask image, with updated documentation. Also removing the code that wrote the BLANK/BSCALE etc parameters to integer FITS files - the only integer files we write are the mask ones which don't need them.
File size: 6.5 KB
Line 
1CFLAGS = -O2 -ftree-vectorize
2
3FFLAGS = -fast -O4
4
5CC =    @CC@ $(CFLAGS)
6CXX =   @CXX@ $(CFLAGS)
7F77=    @F77@ $(FFLAGS)
8LINK=   @LINKER@
9
10BASE = ./src
11
12INSTALLDIR = @prefix@/bin
13LIBDIR = @prefix@/lib
14INCDIR = @prefix@/include/duchamp
15
16V = @PACKAGE_VERSION@
17EXEC = Duchamp-$(V)
18EXEC-STUB = Duchamp
19
20AR = ar cq
21LIB = libduchamp.a
22RANLIB = ranlib
23
24INSTALL = @INSTALL@
25LN_S = @LN_S@
26
27PGPLOTINC = @PGPLOTINC@
28PGPLOTLIB = @PGPLOTLIB@
29
30CFITSIOINC = @CFITSIOINC@
31CFITSIOLIB = @CFITSIOLIB@
32
33WCSINC = @WCSINC@
34WCSLIB = @WCSLIB@
35
36CINC = -I$(BASE) $(PGPLOTINC) $(WCSINC) $(CFITSIOINC)
37
38LIBS = $(WCSLIB) $(CFITSIOLIB) $(PGPLOTLIB)
39
40ATROUSDIR = $(BASE)/ATrous
41PIXELMAPDIR = $(BASE)/PixelMap
42DETECTIONDIR = $(BASE)/Detection
43CUBESDIR = $(BASE)/Cubes
44FITSIODIR = $(BASE)/FitsIO
45UTILDIR = $(BASE)/Utils
46OUTPUTSDIR = $(BASE)/Outputs
47TESTDIR = ./verification
48
49HEADS = $(BASE)/duchamp.hh\
50        $(BASE)/pgheader.hh\
51        $(BASE)/param.hh\
52        $(BASE)/fitsHeader.hh\
53        $(PIXELMAPDIR)/Voxel.hh\
54        $(PIXELMAPDIR)/Scan.hh\
55        $(PIXELMAPDIR)/Object2D.hh\
56        $(PIXELMAPDIR)/Object3D.hh\
57        $(ATROUSDIR)/atrous.hh\
58        $(ATROUSDIR)/filter.hh\
59        $(DETECTIONDIR)/detection.hh\
60        $(DETECTIONDIR)/finders.hh\
61        $(DETECTIONDIR)/ObjectGrower.hh\
62        $(CUBESDIR)/cubes.hh\
63        $(CUBESDIR)/plots.hh\
64        $(FITSIODIR)/Beam.hh\
65        $(FITSIODIR)/DuchampBeam.hh\
66        $(FITSIODIR)/ReadExisting.hh\
67        $(FITSIODIR)/ReadExistingRecon.hh\
68        $(FITSIODIR)/ReadExistingSmooth.hh\
69        $(FITSIODIR)/WriteArray.hh\
70        $(FITSIODIR)/WriteBaselineArray.hh\
71        $(FITSIODIR)/WriteMaskArray.hh\
72        $(FITSIODIR)/WriteMomentMapArray.hh\
73        $(FITSIODIR)/WriteMomentMaskArray.hh\
74        $(FITSIODIR)/WriteReconArray.hh\
75        $(FITSIODIR)/WriteSmoothArray.hh\
76        $(UTILDIR)/Hanning.hh\
77        $(UTILDIR)/GaussSmooth1D.hh\
78        $(UTILDIR)/GaussSmooth2D.hh\
79        $(UTILDIR)/Section.hh\
80        $(UTILDIR)/Statistics.hh\
81        $(UTILDIR)/utils.hh\
82        $(UTILDIR)/feedback.hh\
83        $(UTILDIR)/mycpgplot.hh\
84        $(UTILDIR)/VOField.hh\
85        $(UTILDIR)/VOParam.hh\
86        $(OUTPUTSDIR)/columns.hh\
87        $(OUTPUTSDIR)/CatalogueSpecification.hh\
88        $(OUTPUTSDIR)/CatalogueWriter.hh\
89        $(OUTPUTSDIR)/FileCatalogueWriter.hh\
90        $(OUTPUTSDIR)/ASCIICatalogueWriter.hh\
91        $(OUTPUTSDIR)/VOTableCatalogueWriter.hh\
92        $(OUTPUTSDIR)/AnnotationWriter.hh\
93        $(OUTPUTSDIR)/KarmaAnnotationWriter.hh\
94        $(OUTPUTSDIR)/DS9AnnotationWriter.hh\
95        $(OUTPUTSDIR)/CasaAnnotationWriter.hh
96
97OBJECTS-NOPG = $(BASE)/mainDuchamp.o \
98        $(BASE)/duchamp.o\
99        $(BASE)/param.o\
100        $(BASE)/fitsHeader.o\
101        $(PIXELMAPDIR)/Voxel.o\
102        $(PIXELMAPDIR)/Scan.o\
103        $(PIXELMAPDIR)/Object2D.o\
104        $(PIXELMAPDIR)/Object3D.o\
105        $(ATROUSDIR)/filter.o\
106        $(ATROUSDIR)/atrous_1d_reconstruct.o\
107        $(ATROUSDIR)/atrous_2d_reconstruct.o\
108        $(ATROUSDIR)/atrous_3d_reconstruct.o\
109        $(ATROUSDIR)/baselineSubtract.o\
110        $(ATROUSDIR)/ReconSearch.o\
111        $(DETECTIONDIR)/detection.o\
112        $(DETECTIONDIR)/ObjectGrower.o\
113        $(DETECTIONDIR)/areClose.o\
114        $(DETECTIONDIR)/lutz_detect.o\
115        $(DETECTIONDIR)/mergeIntoList.o\
116        $(DETECTIONDIR)/outputDetection.o\
117        $(DETECTIONDIR)/sorting.o\
118        $(DETECTIONDIR)/spectrumDetect.o\
119        $(CUBESDIR)/cubes.o\
120        $(CUBESDIR)/cubes_extended.o\
121        $(CUBESDIR)/baseline.o\
122        $(CUBESDIR)/CubicSearch.o\
123        $(CUBESDIR)/detectionIO.o\
124        $(CUBESDIR)/existingDetections.o\
125        $(CUBESDIR)/getImage.o\
126        $(CUBESDIR)/invertCube.o\
127        $(CUBESDIR)/Merger.o\
128        $(CUBESDIR)/momentMap.o\
129        $(CUBESDIR)/smoothCube.o\
130        $(CUBESDIR)/spectraUtils.o\
131        $(CUBESDIR)/trimImage.o\
132        $(FITSIODIR)/Beam.o\
133        $(FITSIODIR)/DuchampBeam.o\
134        $(FITSIODIR)/ReadExisting.o\
135        $(FITSIODIR)/ReadExistingRecon.o\
136        $(FITSIODIR)/ReadExistingSmooth.o\
137        $(FITSIODIR)/WriteArray.o\
138        $(FITSIODIR)/WriteBaselineArray.o\
139        $(FITSIODIR)/WriteMaskArray.o\
140        $(FITSIODIR)/WriteMomentMapArray.o\
141        $(FITSIODIR)/WriteMomentMaskArray.o\
142        $(FITSIODIR)/WriteReconArray.o\
143        $(FITSIODIR)/WriteSmoothArray.o\
144        $(FITSIODIR)/dataIO.o\
145        $(FITSIODIR)/headerIO.o\
146        $(FITSIODIR)/subsection.o\
147        $(FITSIODIR)/wcsIO.o\
148        $(UTILDIR)/Section.o\
149        $(UTILDIR)/Statistics.o\
150        $(UTILDIR)/feedback.o\
151        $(UTILDIR)/GaussSmooth1D.o\
152        $(UTILDIR)/Hanning.o\
153        $(UTILDIR)/VOField.o\
154        $(UTILDIR)/VOParam.o\
155        $(UTILDIR)/getStats.o\
156        $(UTILDIR)/getNormalStats.o\
157        $(UTILDIR)/getRobustStats.o\
158        $(UTILDIR)/linear_regression.o\
159        $(UTILDIR)/position_related.o\
160        $(UTILDIR)/sort.o\
161        $(UTILDIR)/string_related.o\
162        $(UTILDIR)/wcsFunctions.o\
163        $(UTILDIR)/zscale.o\
164        $(OUTPUTSDIR)/columns.o\
165        $(OUTPUTSDIR)/CatalogueSpecification.o\
166        $(OUTPUTSDIR)/CatalogueWriter.o\
167        $(OUTPUTSDIR)/FileCatalogueWriter.o\
168        $(OUTPUTSDIR)/ASCIICatalogueWriter.o\
169        $(OUTPUTSDIR)/VOTableCatalogueWriter.o\
170        $(OUTPUTSDIR)/AnnotationWriter.o\
171        $(OUTPUTSDIR)/KarmaAnnotationWriter.o\
172        $(OUTPUTSDIR)/DS9AnnotationWriter.o\
173        $(OUTPUTSDIR)/CasaAnnotationWriter.o
174
175ifeq ($(strip $(PGPLOTLIB)),)
176  OBJECTS = $(OBJECTS-NOPG)
177else
178  OBJECTS = $(OBJECTS-NOPG)\
179        $(CUBESDIR)/drawBlankEdges.o\
180        $(CUBESDIR)/drawMomentCutout.o\
181        $(CUBESDIR)/outputSpectra.o\
182        $(CUBESDIR)/plotting.o\
183        $(UTILDIR)/mycpgplot.o\
184        $(CUBESDIR)/plots.o\
185        $(UTILDIR)/pgplot_related.o
186endif
187
188duchamp : $(OBJECTS)
189        $(LINK) -o $(EXEC) $(OBJECTS) $(LIBS)
190
191lib     : $(OBJECTS)
192        $(AR) $(LIB) $(OBJECTS)
193        $(RANLIB) $(LIB)
194
195createTestImage : $(TESTDIR)/createTestImage.o $(UTILDIR)/get_random_spectrum.o
196        $(CXX) -o createTestImage.x\
197        $(TESTDIR)/createTestImage.o $(UTILDIR)/get_random_spectrum.o\
198        $(CFITSIOLIB) @LIBS@
199
200install :
201        $(INSTALL) -d -m 2755 $(INSTALLDIR)
202        $(INSTALL) -m 755 $(EXEC) $(INSTALLDIR)
203        $(RM) $(INSTALLDIR)/$(EXEC-STUB)
204        cd $(INSTALLDIR) && $(LN_S) $(EXEC) $(EXEC-STUB)
205        -test ! -f $(LIB) || $(INSTALL) -d -m 2755 $(LIBDIR)
206        -test ! -f $(LIB) || $(INSTALL) -m 644 $(LIB) $(LIBDIR)
207        $(INSTALL) -d -m 2755 $(INCDIR)
208        $(INSTALL) -m 644 $(BASE)/*.hh $(INCDIR)
209        $(INSTALL) -m 644 $(BASE)/*.h $(INCDIR)
210        $(INSTALL) -d -m 2755 $(INCDIR)/Cubes
211        $(INSTALL) -m 644 $(CUBESDIR)/*.hh $(INCDIR)/Cubes
212        $(INSTALL) -d -m 2755 $(INCDIR)/ATrous
213        $(INSTALL) -m 644 $(ATROUSDIR)/*.hh $(INCDIR)/ATrous
214        $(INSTALL) -d -m 2755 $(INCDIR)/Detection
215        $(INSTALL) -m 644 $(DETECTIONDIR)/*.hh $(INCDIR)/Detection
216        $(INSTALL) -d -m 2755 $(INCDIR)/FitsIO
217        $(INSTALL) -m 644 $(FITSIODIR)/*.hh $(INCDIR)/FitsIO
218        $(INSTALL) -d -m 2755 $(INCDIR)/PixelMap
219        $(INSTALL) -m 644 $(PIXELMAPDIR)/*.hh $(INCDIR)/PixelMap
220        $(INSTALL) -d -m 2755 $(INCDIR)/Outputs
221        $(INSTALL) -m 644 $(OUTPUTSDIR)/*.hh $(INCDIR)/Outputs
222        $(INSTALL) -d -m 2755 $(INCDIR)/Utils
223        $(INSTALL) -m 644 $(UTILDIR)/*.hh $(INCDIR)/Utils
224        $(INSTALL) -m 644 $(UTILDIR)/*.tcc $(INCDIR)/Utils
225
226$(OBJECTS) : $(HEADS)
227
228.cc.o:
229        $(CXX) -c $< $(CINC) -o $@
230
231.c.o:
232        $(CC) -c $< $(CINC) -o $@
233
234clean :
235        rm -f $(BASE)/*.o $(ATROUSDIR)/*.o $(CUBESDIR)/*.o $(FITSIODIR)/*.o $(DETECTIONDIR)/*.o $(UTILDIR)/*.o $(PIXELMAPDIR)/*.o
236
237cleanest: clean
238        rm -rf Makefile config.log config.status src/config.h $(EXEC)
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