[3] | 1 | #include <iostream> |
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| 2 | #include <iomanip> |
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| 3 | #include <vector> |
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| 4 | #include <Cubes/cubes.hh> |
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| 5 | #include <Utils/utils.hh> |
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| 6 | |
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| 7 | using std::vector; |
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| 8 | using std::setw; |
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| 9 | |
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| 10 | // void Detection::growObject(Image &image) |
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| 11 | // { |
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| 12 | // vector <bool> isInObj(image.getSize(),false); |
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| 13 | // for(int i=0;i<this->pix.size();i++) |
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| 14 | // isInObj[this->pix[i].getX() + this->pix[i].getY()*image.getDimX()] = true; |
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| 15 | |
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| 16 | // for(int pix=0; pix<this->pix.size(); pix++){ // for each pixel in the object |
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| 17 | |
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| 18 | // for(int xnbr=-1; xnbr<=1; xnbr++){ |
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| 19 | // for(int ynbr=-1; ynbr<=1; ynbr++){ |
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| 20 | // if((xnbr!=0)||(ynbr!=0)){ // ignore when both=0 ie. the current object pixel |
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| 21 | |
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| 22 | // Voxel *pixnew = new Voxel; |
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| 23 | // *pixnew = object.getPixel(pix); |
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| 24 | // long newx = this->pix[pix].getX() + xnbr; |
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| 25 | // long newy = this->pix[pix].getY() + ynbr; |
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| 26 | |
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| 27 | // if((newx<image.getDimX())&&(newy<image.getDimY())&&(newx>=0)&&(newy>=0)){ |
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| 28 | |
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| 29 | // pixnew->setX(newx); |
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| 30 | // pixnew->setY(newy); |
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| 31 | // pixnew->setF(image.getPixValue(newx,newy)); |
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| 32 | |
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| 33 | // if( (!isInObj[newx+newy*image.getDimX()]) && |
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| 34 | // (isDetection(pixnew->getF(), image.getMean(), |
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| 35 | // image.getSigma(), image.pars().getGrowthCut())) ){ |
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| 36 | // isInObj[newx+newy*image.getDimX()] = true; |
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| 37 | // this->addPixel(*pixnew); |
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| 38 | // } |
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| 39 | // } |
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| 40 | // delete pixnew; |
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| 41 | // } |
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| 42 | // } |
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| 43 | // } |
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| 44 | |
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| 45 | // } |
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| 46 | |
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| 47 | // isInObj.clear(); |
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| 48 | |
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| 49 | // } |
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| 50 | |
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| 51 | |
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| 52 | void growObject(Detection &object, Image &image) |
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| 53 | { |
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| 54 | vector <bool> isInObj(image.getSize(),false); |
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| 55 | for(int i=0;i<object.getSize();i++) |
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| 56 | isInObj[object.getX(i) + object.getY(i)*image.getDimX()] = true; |
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| 57 | |
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| 58 | for(int pix=0; pix<object.getSize(); pix++){ // for each pixel in the object |
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| 59 | |
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| 60 | for(int xnbr=-1; xnbr<=1; xnbr++){ |
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| 61 | for(int ynbr=-1; ynbr<=1; ynbr++){ |
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| 62 | if((xnbr!=0)||(ynbr!=0)){ // ignore when both=0 ie. the current object pixel |
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| 63 | |
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| 64 | Voxel *pixnew = new Voxel; |
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| 65 | *pixnew = object.getPixel(pix); |
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| 66 | long newx = object.getX(pix) + xnbr; |
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| 67 | long newy = object.getY(pix) + ynbr; |
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| 68 | |
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| 69 | if((newx<image.getDimX())&&(newy<image.getDimY())&&(newx>=0)&&(newy>=0)){ |
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| 70 | |
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| 71 | pixnew->setX(newx); |
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| 72 | pixnew->setY(newy); |
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| 73 | pixnew->setF(image.getPixValue(newx,newy)); |
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| 74 | |
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| 75 | if( (!isInObj[newx+newy*image.getDimX()]) && |
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| 76 | (isDetection(pixnew->getF(), image.getMean(), |
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| 77 | image.getSigma(), image.pars().getGrowthCut())) ){ |
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| 78 | isInObj[newx+newy*image.getDimX()] = true; |
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| 79 | object.addPixel(*pixnew); |
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| 80 | } |
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| 81 | } |
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| 82 | delete pixnew; |
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| 83 | } |
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| 84 | } |
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| 85 | } |
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| 86 | |
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| 87 | } |
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| 88 | |
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| 89 | isInObj.clear(); |
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| 90 | |
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| 91 | } |
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| 92 | |
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| 93 | void growObject(Detection &object, Cube &cube) |
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| 94 | { |
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| 95 | vector <bool> isInObj(cube.getSize(),false); |
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| 96 | float *cut = new float; |
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| 97 | float *flux = new float; |
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| 98 | float *thresh1 = new float; |
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| 99 | float *thresh2 = new float; |
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| 100 | long *pos = new long; |
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| 101 | long *chanpos = new long; |
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| 102 | long *newx = new long; |
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| 103 | long *newy = new long; |
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| 104 | long *newz = new long; |
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| 105 | |
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| 106 | for(int i=0;i<object.getSize();i++) { |
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| 107 | long pos = object.getX(i) + object.getY(i)*cube.getDimX() + |
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| 108 | object.getZ(i)*cube.getDimX()*cube.getDimY(); |
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| 109 | isInObj[pos] = true; |
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| 110 | } |
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| 111 | *cut = cube.pars().getGrowthCut(); |
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| 112 | |
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| 113 | for(int pix=0; pix<object.getSize(); pix++){ // for each pixel in the object |
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| 114 | |
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| 115 | // std::cout.setf(std::ios::right); |
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| 116 | // std::cout <<":"<< setw(6) << pix+1 << "/"; |
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| 117 | // std::cout.unsetf(std::ios::right); |
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| 118 | // std::cout.setf(std::ios::left); |
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| 119 | // std::cout << setw(6) << object.getSize() << "\b\b\b\b\b\b\b\b\b\b\b\b\b\b" << std::flush; |
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| 120 | // std::cout.unsetf(std::ios::left); |
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| 121 | |
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| 122 | |
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| 123 | for(int xnbr=-1; xnbr<=1; xnbr++){ |
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| 124 | for(int ynbr=-1; ynbr<=1; ynbr++){ |
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| 125 | for(int znbr=-1; znbr<=1; znbr++){ |
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| 126 | |
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| 127 | if((xnbr!=0)||(ynbr!=0)||(znbr!=0)){ // ignore when all=0 ie. the current object pixel |
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| 128 | |
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| 129 | Voxel *pixnew = new Voxel; |
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| 130 | *pixnew = object.getPixel(pix); |
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| 131 | *newx = object.getX(pix) + xnbr; |
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| 132 | *newy = object.getY(pix) + ynbr; |
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| 133 | *newz = object.getZ(pix) + znbr; |
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| 134 | |
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| 135 | if((*newx<cube.getDimX())&&(*newx>=0)&& |
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| 136 | (*newy<cube.getDimY())&&(*newy>=0)&& |
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| 137 | (*newz<cube.getDimZ())&&(*newz>=0)){ |
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| 138 | |
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| 139 | // std::cerr << *newx<<" "<<*newy<<" "<<*newz<<" " |
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| 140 | // <<cube.getDimX()<<" "<<cube.getDimY()<<" "<<cube.getDimZ() |
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| 141 | // <<std::endl; |
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| 142 | pixnew->setX(*newx); |
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| 143 | pixnew->setY(*newy); |
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| 144 | pixnew->setZ(*newz); |
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| 145 | // In following R=recon, B=baseline |
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| 146 | // Four cases: i) B+R -- use recon |
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| 147 | // ii) R -- use recon |
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| 148 | // iii) B -- use array |
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| 149 | // iv) none-- use array |
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| 150 | if(cube.isRecon()) *flux = cube.getReconValue(*newx,*newy,*newz); |
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| 151 | else *flux = cube.getPixValue(*newx,*newy,*newz); |
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| 152 | pixnew->setF(*flux); |
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| 153 | |
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| 154 | *chanpos = *newx + *newy * cube.getDimX(); |
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| 155 | *pos = *newx + *newy * cube.getDimX() + *newz * cube.getDimX() * cube.getDimY(); |
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| 156 | // thresh1 = spectral growth threshold |
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| 157 | *thresh1 = cube.getSpecMean(*chanpos) + *cut * cube.getSpecSigma(*chanpos); |
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| 158 | // thresh2 = channel map growth threshold |
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| 159 | *thresh2 = cube.getChanMean(*newz) + *cut * cube.getChanSigma(*newz); |
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| 160 | if( (!isInObj[*pos]) && |
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| 161 | ( (*flux > *thresh1) || (*flux > *thresh2) ) ){ |
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| 162 | isInObj[*pos] = true; |
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| 163 | object.addPixel(*pixnew); |
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| 164 | } |
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| 165 | } |
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| 166 | delete pixnew; |
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| 167 | } |
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| 168 | |
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| 169 | } |
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| 170 | } |
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| 171 | } |
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| 172 | |
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| 173 | } // end of pix loop |
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| 174 | |
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| 175 | object.calcParams(); |
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| 176 | |
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| 177 | delete cut; |
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| 178 | delete flux; |
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| 179 | delete thresh1; |
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| 180 | delete thresh2; |
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| 181 | delete pos; |
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| 182 | delete chanpos; |
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| 183 | delete newx; |
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| 184 | delete newy; |
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| 185 | delete newz; |
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| 186 | |
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| 187 | isInObj.clear(); |
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| 188 | |
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| 189 | } |
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