1 | /** |
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2 | * LUTZ_DETECT.CC |
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3 | * |
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4 | * A detection algorithm based on that of Lutz (1980). |
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5 | * |
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6 | * INPUTS: |
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7 | * image -- an Image object, containing a 2D image that has been |
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8 | * processed such that its pValue array is defined. |
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9 | * OUTPUTS: |
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10 | * The detection and mask arrays in image will be filled, according to |
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11 | * the location of the objects in the image. |
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12 | * |
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13 | */ |
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14 | #include <Cubes/cubes.hh> |
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15 | #include <vector> |
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16 | |
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17 | enum STATUS { NONOBJECT, OBJECT, COMPLETE, INCOMPLETE }; |
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18 | enum ROW { PRIOR=0, CURRENT}; |
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19 | enum NULLS { NULLSTART=-1, NULLMARKER=45}; //ASCII 45 = '-' --> eases printing in case of debugging |
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20 | |
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21 | class Stack{ |
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22 | public: |
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23 | Stack(){start=NULLSTART; end=NULLSTART;}; |
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24 | int start; |
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25 | int end; |
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26 | Detection info; |
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27 | }; |
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28 | |
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29 | //void lutz_detect(Image &image) |
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30 | void Image::lutz_detect() |
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31 | { |
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32 | // Allocate necessary arrays. |
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33 | STATUS *status = new STATUS[2]; |
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34 | Detection *store = new Detection[this->axisDim[0]+1]; |
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35 | char *marker = new char[this->axisDim[0]+1]; |
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36 | for(int i=0; i<(this->axisDim[0]+1); i++) marker[i] = NULLMARKER; |
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37 | vector <Stack> *oS = new vector <Stack>; |
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38 | vector <STATUS> *psS = new vector <STATUS>; |
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39 | |
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40 | Pixel *pix = new Pixel; |
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41 | |
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42 | for(int posY=0;posY<(this->axisDim[1]+1);posY++){ |
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43 | // Loop over each row -- consider rows one at a time |
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44 | |
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45 | status[PRIOR] = COMPLETE; |
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46 | status[CURRENT] = NONOBJECT; |
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47 | |
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48 | pix->setY(posY); |
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49 | |
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50 | for(int posX=0;posX<(this->axisDim[0]+1);posX++){ |
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51 | // Now the loop for a given row, looking at each column individually. |
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52 | |
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53 | char *currentMarker = new char; |
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54 | *currentMarker = marker[posX]; |
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55 | marker[posX] = NULLMARKER; |
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56 | pix->setX(posX); |
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57 | |
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58 | bool *isObject = new bool; |
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59 | *isObject = false; |
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60 | if((posX<this->axisDim[0])&&(posY<this->axisDim[1])){ // if we are in the original image |
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61 | *isObject = this->isDetection(posX,posY); |
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62 | pix->setF( this->array[posY*this->axisDim[0] + posX] ); |
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63 | } |
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64 | // else we're in the padding row/col and isObject=FALSE; |
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65 | |
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66 | /** |
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67 | * ------------------------------ START SEGMENT ------------------------ |
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68 | * If the current pixel is object and the previous pixel is not, then |
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69 | * start a new segment. |
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70 | * If the pixel touches an object on the prior row, the marker is either |
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71 | * an S or an s, depending on whether the object has started yet. |
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72 | * If it doesn't touch a prior object, this is the start of a completly |
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73 | * new object on this row. |
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74 | */ |
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75 | if ( (*isObject) && (status[CURRENT] != OBJECT) ){ |
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76 | |
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77 | status[CURRENT] = OBJECT; |
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78 | if(status[PRIOR] == OBJECT){ |
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79 | |
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80 | if(oS->back().start==NULLSTART){ |
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81 | marker[posX] = 'S'; |
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82 | oS->back().start = posX; |
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83 | } |
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84 | else marker[posX] = 's'; |
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85 | } |
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86 | else{ |
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87 | psS->push_back(status[PRIOR]); //PUSH PS onto PSSTACK; |
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88 | marker[posX] = 'S'; |
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89 | oS->resize(oS->size()+1); //PUSH OBSTACK; |
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90 | oS->back().start = posX; |
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91 | |
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92 | status[PRIOR] = COMPLETE; |
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93 | } |
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94 | } |
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95 | |
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96 | /** |
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97 | * ------------------------------ PROCESS MARKER -------------------------- |
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98 | * If the current marker is not blank, then we need to deal with it. |
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99 | * Four cases: |
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100 | * S --> start of object on prior row. Push priorStatus onto PSSTACK |
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101 | * and set priorStatus to OBJECT |
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102 | * s --> start of a secondary segment of object on prior row. |
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103 | * If current object joined, pop PSSTACK and join the objects. |
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104 | * Set priorStatus to OBJECT. |
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105 | * f --> end of a secondary segment of object on prior row. |
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106 | * Set priorStatus to INCOMPLETE. |
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107 | * F --> end of object on prior row. If no more of the object is to come |
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108 | * (priorStatus=COMPLETE), then finish it and output data. |
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109 | * Addition -- only if it has more than the minimum no. of pixels. |
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110 | */ |
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111 | if(*currentMarker != NULLMARKER){ |
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112 | |
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113 | if(*currentMarker == 'S'){ |
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114 | psS->push_back(status[PRIOR]); // PUSH PS onto PSSTACK |
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115 | if(status[CURRENT] == NONOBJECT){ |
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116 | psS->push_back(COMPLETE); // PUSH COMPLETE ONTO PSSTACK; |
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117 | oS->resize(oS->size()+1); // PUSH OBSTACK; |
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118 | oS->back().info = store[posX]; |
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119 | } |
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120 | else oS->back().info.addAnObject( store[posX] ); |
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121 | |
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122 | status[PRIOR] = OBJECT; |
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123 | } |
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124 | |
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125 | /*---------*/ |
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126 | if(*currentMarker == 's'){ |
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127 | |
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128 | if( (status[CURRENT] == OBJECT) && (status[PRIOR] == COMPLETE) ){ |
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129 | status[PRIOR] = psS->back(); |
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130 | psS->pop_back(); //POP PSSTACK ONTO PS |
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131 | |
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132 | oS->at(oS->size()-2).info.addAnObject( oS->back().info ); |
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133 | if(oS->at(oS->size()-2).start == NULLSTART) oS->at(oS->size()-2).start = oS->back().start; |
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134 | else marker[oS->back().start] = 's'; |
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135 | |
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136 | oS->pop_back(); |
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137 | } |
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138 | |
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139 | status[PRIOR] = OBJECT; |
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140 | } |
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141 | |
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142 | /*---------*/ |
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143 | if(*currentMarker == 'f') status[PRIOR] = INCOMPLETE; |
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144 | |
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145 | /*---------*/ |
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146 | if(*currentMarker == 'F') { |
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147 | |
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148 | status[PRIOR] = psS->back(); |
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149 | psS->pop_back(); //POP PSSTACK ONTO PS |
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150 | |
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151 | if( (status[CURRENT] == NONOBJECT) && (status[PRIOR] == COMPLETE) ){ |
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152 | |
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153 | if(oS->back().start == NULLSTART){ // object completed |
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154 | if(oS->back().info.getSize() >= this->minSize){ // is it big enough? |
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155 | oS->back().info.calcParams(); // work out midpoints, fluxes etc |
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156 | this->addObject(oS->back().info); |
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157 | this->maskObject(oS->back().info); |
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158 | } |
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159 | } |
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160 | else{ |
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161 | marker[ oS->back().end ] = 'F'; |
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162 | store[ oS->back().start ] = oS->back().info; |
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163 | } |
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164 | |
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165 | oS->pop_back(); |
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166 | |
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167 | status[PRIOR] = psS->back(); |
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168 | psS->pop_back(); |
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169 | } |
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170 | } |
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171 | |
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172 | } // end of PROCESSMARKER section ( if(currentMarker!=NULLMARKER) ) |
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173 | |
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174 | if (*isObject){ |
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175 | oS->back().info.addPixel(*pix); |
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176 | } |
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177 | else{ |
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178 | /** |
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179 | *------------------------------ END SEGMENT --------------------------- |
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180 | * If the current pixel is background and the previous pixel was an |
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181 | * object, then finish the segment. |
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182 | * If the prior status is COMPLETE, it's the end of the final segment |
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183 | * of the object section. |
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184 | * If not, it's the end of the segment, but not necessarily the section. |
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185 | */ |
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186 | if ( status[CURRENT] == OBJECT) { |
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187 | |
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188 | status[CURRENT] = NONOBJECT; |
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189 | |
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190 | if(status[PRIOR] != COMPLETE){ |
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191 | marker[posX] = 'f'; |
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192 | oS->back().end = posX; |
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193 | } |
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194 | else{ |
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195 | status[PRIOR] = psS->back(); |
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196 | psS->pop_back(); //POP PSSTACK onto PS; |
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197 | marker[posX] = 'F'; |
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198 | store[ oS->back().start ] = oS->back().info; |
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199 | oS->pop_back(); |
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200 | } |
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201 | } |
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202 | |
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203 | } //-> end of END SEGMENT else{ clause |
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204 | |
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205 | delete currentMarker; |
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206 | delete isObject; |
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207 | |
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208 | }//-> end of loop over posX |
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209 | |
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210 | }//-> end of loop over posY |
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211 | |
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212 | // clean up and remove declared arrays |
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213 | delete [] marker; |
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214 | delete oS; |
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215 | delete psS; |
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216 | delete [] store; |
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217 | delete [] status; |
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218 | delete pix; |
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219 | |
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220 | } |
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