1 | #include <iostream> |
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2 | #include <iomanip> |
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3 | #include <vector> |
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4 | #include <Cubes/cubes.hh> |
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5 | #include <Utils/utils.hh> |
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6 | |
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7 | using std::vector; |
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8 | using std::setw; |
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9 | |
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10 | // void Detection::growObject(Image &image) |
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11 | // { |
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12 | // vector <bool> isInObj(image.getSize(),false); |
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13 | // for(int i=0;i<this->pix.size();i++) |
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14 | // isInObj[this->pix[i].getX() + this->pix[i].getY()*image.getDimX()] = true; |
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15 | |
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16 | // for(int pix=0; pix<this->pix.size(); pix++){ // for each pixel in the object |
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17 | |
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18 | // for(int xnbr=-1; xnbr<=1; xnbr++){ |
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19 | // for(int ynbr=-1; ynbr<=1; ynbr++){ |
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20 | // if((xnbr!=0)||(ynbr!=0)){ // ignore when both=0 ie. the current object pixel |
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21 | |
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22 | // Voxel *pixnew = new Voxel; |
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23 | // *pixnew = object.getPixel(pix); |
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24 | // long newx = this->pix[pix].getX() + xnbr; |
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25 | // long newy = this->pix[pix].getY() + ynbr; |
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26 | |
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27 | // if((newx<image.getDimX())&&(newy<image.getDimY())&&(newx>=0)&&(newy>=0)){ |
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28 | |
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29 | // pixnew->setX(newx); |
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30 | // pixnew->setY(newy); |
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31 | // pixnew->setF(image.getPixValue(newx,newy)); |
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32 | |
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33 | // if( (!isInObj[newx+newy*image.getDimX()]) && |
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34 | // (isDetection(pixnew->getF(), image.getMean(), |
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35 | // image.getSigma(), image.pars().getGrowthCut())) ){ |
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36 | // isInObj[newx+newy*image.getDimX()] = true; |
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37 | // this->addPixel(*pixnew); |
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38 | // } |
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39 | // } |
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40 | // delete pixnew; |
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41 | // } |
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42 | // } |
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43 | // } |
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44 | |
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45 | // } |
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46 | |
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47 | // isInObj.clear(); |
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48 | |
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49 | // } |
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50 | |
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51 | |
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52 | void growObject(Detection &object, Image &image) |
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53 | { |
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54 | vector <bool> isInObj(image.getSize(),false); |
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55 | for(int i=0;i<object.getSize();i++) |
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56 | isInObj[object.getX(i) + object.getY(i)*image.getDimX()] = true; |
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57 | |
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58 | for(int pix=0; pix<object.getSize(); pix++){ // for each pixel in the object |
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59 | |
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60 | for(int xnbr=-1; xnbr<=1; xnbr++){ |
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61 | for(int ynbr=-1; ynbr<=1; ynbr++){ |
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62 | if((xnbr!=0)||(ynbr!=0)){ // ignore when both=0 ie. the current object pixel |
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63 | |
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64 | Voxel *pixnew = new Voxel; |
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65 | *pixnew = object.getPixel(pix); |
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66 | long newx = object.getX(pix) + xnbr; |
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67 | long newy = object.getY(pix) + ynbr; |
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68 | |
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69 | if((newx<image.getDimX())&&(newy<image.getDimY())&&(newx>=0)&&(newy>=0)){ |
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70 | |
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71 | pixnew->setX(newx); |
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72 | pixnew->setY(newy); |
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73 | pixnew->setF(image.getPixValue(newx,newy)); |
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74 | |
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75 | if( (!isInObj[newx+newy*image.getDimX()]) && |
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76 | (isDetection(pixnew->getF(), image.getMean(), |
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77 | image.getSigma(), image.pars().getGrowthCut())) ){ |
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78 | isInObj[newx+newy*image.getDimX()] = true; |
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79 | object.addPixel(*pixnew); |
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80 | } |
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81 | } |
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82 | delete pixnew; |
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83 | } |
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84 | } |
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85 | } |
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86 | |
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87 | } |
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88 | |
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89 | isInObj.clear(); |
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90 | |
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91 | } |
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92 | |
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93 | void growObject(Detection &object, Cube &cube) |
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94 | { |
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95 | vector <bool> isInObj(cube.getSize(),false); |
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96 | float *cut = new float; |
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97 | float *flux = new float; |
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98 | float *thresh1 = new float; |
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99 | float *thresh2 = new float; |
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100 | long *pos = new long; |
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101 | long *chanpos = new long; |
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102 | long *newx = new long; |
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103 | long *newy = new long; |
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104 | long *newz = new long; |
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105 | |
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106 | for(int i=0;i<object.getSize();i++) { |
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107 | long pos = object.getX(i) + object.getY(i)*cube.getDimX() + |
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108 | object.getZ(i)*cube.getDimX()*cube.getDimY(); |
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109 | isInObj[pos] = true; |
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110 | } |
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111 | *cut = cube.pars().getGrowthCut(); |
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112 | |
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113 | for(int pix=0; pix<object.getSize(); pix++){ // for each pixel in the object |
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114 | |
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115 | // std::cout.setf(std::ios::right); |
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116 | // std::cout <<":"<< setw(6) << pix+1 << "/"; |
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117 | // std::cout.unsetf(std::ios::right); |
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118 | // std::cout.setf(std::ios::left); |
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119 | // std::cout << setw(6) << object.getSize() << "\b\b\b\b\b\b\b\b\b\b\b\b\b\b" << std::flush; |
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120 | // std::cout.unsetf(std::ios::left); |
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121 | |
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122 | |
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123 | for(int xnbr=-1; xnbr<=1; xnbr++){ |
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124 | for(int ynbr=-1; ynbr<=1; ynbr++){ |
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125 | for(int znbr=-1; znbr<=1; znbr++){ |
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126 | |
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127 | if((xnbr!=0)||(ynbr!=0)||(znbr!=0)){ // ignore when all=0 ie. the current object pixel |
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128 | |
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129 | Voxel *pixnew = new Voxel; |
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130 | *pixnew = object.getPixel(pix); |
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131 | *newx = object.getX(pix) + xnbr; |
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132 | *newy = object.getY(pix) + ynbr; |
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133 | *newz = object.getZ(pix) + znbr; |
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134 | |
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135 | if((*newx<cube.getDimX())&&(*newx>=0)&& |
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136 | (*newy<cube.getDimY())&&(*newy>=0)&& |
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137 | (*newz<cube.getDimZ())&&(*newz>=0)){ |
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138 | |
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139 | // std::cerr << *newx<<" "<<*newy<<" "<<*newz<<" " |
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140 | // <<cube.getDimX()<<" "<<cube.getDimY()<<" "<<cube.getDimZ() |
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141 | // <<std::endl; |
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142 | pixnew->setX(*newx); |
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143 | pixnew->setY(*newy); |
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144 | pixnew->setZ(*newz); |
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145 | // In following R=recon, B=baseline |
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146 | // Four cases: i) B+R -- use recon |
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147 | // ii) R -- use recon |
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148 | // iii) B -- use array |
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149 | // iv) none-- use array |
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150 | if(cube.isRecon()) *flux = cube.getReconValue(*newx,*newy,*newz); |
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151 | else *flux = cube.getPixValue(*newx,*newy,*newz); |
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152 | pixnew->setF(*flux); |
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153 | |
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154 | *chanpos = *newx + *newy * cube.getDimX(); |
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155 | *pos = *newx + *newy * cube.getDimX() + *newz * cube.getDimX() * cube.getDimY(); |
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156 | // thresh1 = spectral growth threshold |
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157 | *thresh1 = cube.getSpecMean(*chanpos) + *cut * cube.getSpecSigma(*chanpos); |
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158 | // thresh2 = channel map growth threshold |
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159 | *thresh2 = cube.getChanMean(*newz) + *cut * cube.getChanSigma(*newz); |
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160 | if( (!isInObj[*pos]) && |
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161 | ( (*flux > *thresh1) || (*flux > *thresh2) ) ){ |
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162 | isInObj[*pos] = true; |
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163 | object.addPixel(*pixnew); |
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164 | } |
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165 | } |
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166 | delete pixnew; |
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167 | } |
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168 | |
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169 | } |
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170 | } |
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171 | } |
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172 | |
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173 | } // end of pix loop |
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174 | |
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175 | object.calcParams(); |
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176 | |
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177 | delete cut; |
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178 | delete flux; |
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179 | delete thresh1; |
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180 | delete thresh2; |
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181 | delete pos; |
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182 | delete chanpos; |
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183 | delete newx; |
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184 | delete newy; |
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185 | delete newz; |
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186 | |
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187 | isInObj.clear(); |
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188 | |
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189 | } |
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