Two sets of large changes:
1) Added reconDim, to select which dimension of reconstruction to use.
2) Changed the way the MW channels are dealt with -- now not set to 0. but
simply ignored for searching purposes.
Summary of changes for each file:
duchamp.hh -- added keyword info for reconDim
param.hh -- Introduced reconDim and flagUsingBlank and isInMW.
param.cc -- Introduced reconDim and flagUsingBlank: initialisation etc commands
InputComplete? -- Added reconDim info
mainDuchamp.cc -- Removed the removeMW call. Changed search function names
docs/Guide.tex -- New code to deal with changes: reconDim, MW removal,
up-to-date output examples, better hints & notes section
Detection/thresholding_functions.cc -- minor typo correction
Cubes/cubes.hh -- added isBlank and removeMW functions in Image class, and
renamed search function prototypes
Cubes/cubes.cc -- added removeMW function for Image class, cleaned up
Cube::removeMW as well (although now not used)
Cubes/outputSpectra.cc -- Improved use of isBlank and isInMW functions: now
show MW channels but don't use them in calculating
the flux range
Cubes/getImage.cc -- added line to indicate whether the Param's blank value
is being used, rather than the FITS header.
Cubes/cubicSearch.cc -- renamed functions: front end is now CubicSearch?, and
searching function is search3DArray.
-- Improved way MW removal is dealt with. Changed
location of stats calculations.
Cubes/saveImage.cc -- added code for saving reconDim info
Cubes/readRecon.cc -- added code for reading reconDim info (and added status
intialisations before all cfitsio commands)
ATrous/ReconSearch.cc -- renamed functions: front end is now ReconSearch?, and
searching function is searchReconArray.
Using reconDim to decide which reconstruction to use.
-- Improved way MW removal is dealt with. Changed
location of stats calculations.
ATrous/atrous_1d_reconstruct.cc -- using Median stats
ATrous/atrous_2d_reconstruct.cc -- made code up to date, to conform with 1- &
3-d code. Removed boundary conditions.
ATrous/atrous_3d_reconstruct.cc -- corrected typo (avGapY /= float(xdim)).
Using median stats.
Cubes/cubicSearchNMerge.cc -- Deleted. (not used)
Cubes/readParams.cc -- Deleted. (not used)
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