source: branches/OptimisedGrowerTesting/Makefile.in @ 1441

Last change on this file since 1441 was 1342, checked in by MatthewWhiting, 10 years ago

Initial commit of the code for #204. Porting the OptimisedGrower? from the ASKAP/Selavy code, getting it to build, and implementing as a separate growing step in Merger.cc. Still to test.
File size: 7.9 KB
RevLine 
[1221]1CFLAGS = -O2 -ftree-vectorize -fPIC
[107]2
[794]3FFLAGS = -fast -O4
[107]4
[652]5CC =    @CC@ $(CFLAGS)
6CXX =   @CXX@ $(CFLAGS)
[110]7F77=    @F77@ $(FFLAGS)
[384]8LINK=   @LINKER@
[107]9
[108]10BASE = ./src
[107]11
[343]12INSTALLDIR = @prefix@/bin
[389]13LIBDIR = @prefix@/lib
14INCDIR = @prefix@/include/duchamp
[107]15
[338]16V = @PACKAGE_VERSION@
17EXEC = Duchamp-$(V)
18EXEC-STUB = Duchamp
[107]19
[389]20AR = ar cq
[1227]21LIB = libduchamp-$(V).a
22LIB_LN = libduchamp.a
[719]23RANLIB = ranlib
[1224]24SHAREDLIB = @SHRLD@
25#SHAREDFLAGS = -shared -Wl,-soname,@SHRLIB@
[1221]26LIBSO = @SHRLIB@
27LIBSO_LN = @SHRLN@
[389]28
[338]29INSTALL = @INSTALL@
30LN_S = @LN_S@
31
[107]32PGPLOTINC = @PGPLOTINC@
33PGPLOTLIB = @PGPLOTLIB@
34
35CFITSIOINC = @CFITSIOINC@
36CFITSIOLIB = @CFITSIOLIB@
37
38WCSINC = @WCSINC@
39WCSLIB = @WCSLIB@
40
[1114]41CINC = -I$(BASE) $(PGPLOTINC) $(WCSINC) $(CFITSIOINC)
[107]42
[938]43LIBS = $(WCSLIB) $(CFITSIOLIB) $(PGPLOTLIB)
[107]44
45ATROUSDIR = $(BASE)/ATrous
[261]46PIXELMAPDIR = $(BASE)/PixelMap
[107]47DETECTIONDIR = $(BASE)/Detection
48CUBESDIR = $(BASE)/Cubes
[165]49FITSIODIR = $(BASE)/FitsIO
[1243]50PLOTDIR = $(BASE)/Plotting
[107]51UTILDIR = $(BASE)/Utils
[1048]52OUTPUTSDIR = $(BASE)/Outputs
[148]53TESTDIR = ./verification
[107]54
[1181]55HEADS = $(BASE)/config.h\
56        $(BASE)/duchamp.hh\
[315]57        $(BASE)/pgheader.hh\
[107]58        $(BASE)/param.hh\
[272]59        $(BASE)/fitsHeader.hh\
[1293]60        $(PIXELMAPDIR)/Line.hh\
[258]61        $(PIXELMAPDIR)/Voxel.hh\
62        $(PIXELMAPDIR)/Scan.hh\
63        $(PIXELMAPDIR)/Object2D.hh\
64        $(PIXELMAPDIR)/Object3D.hh\
[107]65        $(ATROUSDIR)/atrous.hh\
[232]66        $(ATROUSDIR)/filter.hh\
[1339]67        $(ATROUSDIR)/B3SplineFilter.hh\
68        $(ATROUSDIR)/TriangleFilter.hh\
69        $(ATROUSDIR)/HaarFilter.hh\
70        $(ATROUSDIR)/FilterFactory.hh\
[107]71        $(DETECTIONDIR)/detection.hh\
[582]72        $(DETECTIONDIR)/finders.hh\
[750]73        $(DETECTIONDIR)/ObjectGrower.hh\
[1342]74        $(DETECTIONDIR)/OptimisedGrower.hh\
[107]75        $(CUBESDIR)/cubes.hh\
[798]76        $(FITSIODIR)/Beam.hh\
77        $(FITSIODIR)/DuchampBeam.hh\
[1125]78        $(FITSIODIR)/ReadExisting.hh\
79        $(FITSIODIR)/ReadExistingRecon.hh\
80        $(FITSIODIR)/ReadExistingSmooth.hh\
81        $(FITSIODIR)/WriteArray.hh\
82        $(FITSIODIR)/WriteBaselineArray.hh\
83        $(FITSIODIR)/WriteMaskArray.hh\
84        $(FITSIODIR)/WriteMomentMapArray.hh\
[1142]85        $(FITSIODIR)/WriteMomentMaskArray.hh\
[1125]86        $(FITSIODIR)/WriteReconArray.hh\
87        $(FITSIODIR)/WriteSmoothArray.hh\
[1243]88        $(PLOTDIR)/DuchampPlot.hh\
89        $(PLOTDIR)/MultipleDuchampPlot.hh\
90        $(PLOTDIR)/ImagePlot.hh\
91        $(PLOTDIR)/SpectralPlot.hh\
92        $(PLOTDIR)/SimpleSpectralPlot.hh\
93        $(PLOTDIR)/CutoutPlot.hh\
[275]94        $(UTILDIR)/Hanning.hh\
[638]95        $(UTILDIR)/GaussSmooth1D.hh\
96        $(UTILDIR)/GaussSmooth2D.hh\
[258]97        $(UTILDIR)/Section.hh\
[201]98        $(UTILDIR)/Statistics.hh\
[275]99        $(UTILDIR)/utils.hh\
100        $(UTILDIR)/feedback.hh\
[916]101        $(UTILDIR)/mycpgplot.hh\
102        $(UTILDIR)/VOField.hh\
[1048]103        $(UTILDIR)/VOParam.hh\
[1061]104        $(OUTPUTSDIR)/columns.hh\
105        $(OUTPUTSDIR)/CatalogueSpecification.hh\
[1048]106        $(OUTPUTSDIR)/CatalogueWriter.hh\
[1080]107        $(OUTPUTSDIR)/FileCatalogueWriter.hh\
[1048]108        $(OUTPUTSDIR)/ASCIICatalogueWriter.hh\
[1072]109        $(OUTPUTSDIR)/VOTableCatalogueWriter.hh\
110        $(OUTPUTSDIR)/AnnotationWriter.hh\
111        $(OUTPUTSDIR)/KarmaAnnotationWriter.hh\
[1126]112        $(OUTPUTSDIR)/DS9AnnotationWriter.hh\
113        $(OUTPUTSDIR)/CasaAnnotationWriter.hh
[107]114
[318]115OBJECTS-NOPG = $(BASE)/mainDuchamp.o \
[123]116        $(BASE)/duchamp.o\
[108]117        $(BASE)/param.o\
[272]118        $(BASE)/fitsHeader.o\
[1293]119        $(PIXELMAPDIR)/Line.o\
[258]120        $(PIXELMAPDIR)/Voxel.o\
121        $(PIXELMAPDIR)/Scan.o\
122        $(PIXELMAPDIR)/Object2D.o\
123        $(PIXELMAPDIR)/Object3D.o\
[232]124        $(ATROUSDIR)/filter.o\
[1339]125        $(ATROUSDIR)/B3SplineFilter.o\
126        $(ATROUSDIR)/TriangleFilter.o\
127        $(ATROUSDIR)/HaarFilter.o\
128        $(ATROUSDIR)/FilterFactory.o\
[107]129        $(ATROUSDIR)/atrous_1d_reconstruct.o\
130        $(ATROUSDIR)/atrous_2d_reconstruct.o\
131        $(ATROUSDIR)/atrous_3d_reconstruct.o\
132        $(ATROUSDIR)/baselineSubtract.o\
133        $(ATROUSDIR)/ReconSearch.o\
134        $(DETECTIONDIR)/detection.o\
[750]135        $(DETECTIONDIR)/ObjectGrower.o\
[1342]136        $(DETECTIONDIR)/OptimisedGrower.o\
[107]137        $(DETECTIONDIR)/areClose.o\
138        $(DETECTIONDIR)/lutz_detect.o\
139        $(DETECTIONDIR)/mergeIntoList.o\
140        $(DETECTIONDIR)/outputDetection.o\
141        $(DETECTIONDIR)/sorting.o\
142        $(DETECTIONDIR)/spectrumDetect.o\
143        $(CUBESDIR)/cubes.o\
[224]144        $(CUBESDIR)/cubes_extended.o\
[107]145        $(CUBESDIR)/baseline.o\
[177]146        $(CUBESDIR)/CubicSearch.o\
[107]147        $(CUBESDIR)/detectionIO.o\
[475]148        $(CUBESDIR)/existingDetections.o\
[107]149        $(CUBESDIR)/getImage.o\
150        $(CUBESDIR)/invertCube.o\
151        $(CUBESDIR)/Merger.o\
[680]152        $(CUBESDIR)/momentMap.o\
[201]153        $(CUBESDIR)/smoothCube.o\
[463]154        $(CUBESDIR)/spectraUtils.o\
[107]155        $(CUBESDIR)/trimImage.o\
[798]156        $(FITSIODIR)/Beam.o\
157        $(FITSIODIR)/DuchampBeam.o\
[1125]158        $(FITSIODIR)/ReadExisting.o\
159        $(FITSIODIR)/ReadExistingRecon.o\
160        $(FITSIODIR)/ReadExistingSmooth.o\
161        $(FITSIODIR)/WriteArray.o\
162        $(FITSIODIR)/WriteBaselineArray.o\
163        $(FITSIODIR)/WriteMaskArray.o\
164        $(FITSIODIR)/WriteMomentMapArray.o\
[1142]165        $(FITSIODIR)/WriteMomentMaskArray.o\
[1125]166        $(FITSIODIR)/WriteReconArray.o\
167        $(FITSIODIR)/WriteSmoothArray.o\
[165]168        $(FITSIODIR)/dataIO.o\
169        $(FITSIODIR)/headerIO.o\
170        $(FITSIODIR)/subsection.o\
171        $(FITSIODIR)/wcsIO.o\
[258]172        $(UTILDIR)/Section.o\
[201]173        $(UTILDIR)/Statistics.o\
[220]174        $(UTILDIR)/feedback.o\
[638]175        $(UTILDIR)/GaussSmooth1D.o\
[221]176        $(UTILDIR)/Hanning.o\
[916]177        $(UTILDIR)/VOField.o\
178        $(UTILDIR)/VOParam.o\
[107]179        $(UTILDIR)/getStats.o\
[849]180        $(UTILDIR)/getNormalStats.o\
181        $(UTILDIR)/getRobustStats.o\
[107]182        $(UTILDIR)/linear_regression.o\
[1261]183        $(UTILDIR)/medianBaseline.o\
[107]184        $(UTILDIR)/position_related.o\
185        $(UTILDIR)/sort.o\
[733]186        $(UTILDIR)/string_related.o\
[107]187        $(UTILDIR)/wcsFunctions.o\
[1048]188        $(UTILDIR)/zscale.o\
[1061]189        $(OUTPUTSDIR)/columns.o\
190        $(OUTPUTSDIR)/CatalogueSpecification.o\
[1048]191        $(OUTPUTSDIR)/CatalogueWriter.o\
[1080]192        $(OUTPUTSDIR)/FileCatalogueWriter.o\
[1048]193        $(OUTPUTSDIR)/ASCIICatalogueWriter.o\
[1072]194        $(OUTPUTSDIR)/VOTableCatalogueWriter.o\
195        $(OUTPUTSDIR)/AnnotationWriter.o\
196        $(OUTPUTSDIR)/KarmaAnnotationWriter.o\
[1126]197        $(OUTPUTSDIR)/DS9AnnotationWriter.o\
198        $(OUTPUTSDIR)/CasaAnnotationWriter.o
[107]199
[384]200ifeq ($(strip $(PGPLOTLIB)),)
[318]201  OBJECTS = $(OBJECTS-NOPG)
202else
203  OBJECTS = $(OBJECTS-NOPG)\
204        $(CUBESDIR)/drawBlankEdges.o\
205        $(CUBESDIR)/drawMomentCutout.o\
206        $(CUBESDIR)/outputSpectra.o\
207        $(CUBESDIR)/plotting.o\
[1302]208        $(DETECTIONDIR)/drawBorders.o\
[1243]209        $(PLOTDIR)/DuchampPlot.o\
210        $(PLOTDIR)/MultipleDuchampPlot.o\
211        $(PLOTDIR)/ImagePlot.o\
212        $(PLOTDIR)/SpectralPlot.o\
213        $(PLOTDIR)/SimpleSpectralPlot.o\
214        $(PLOTDIR)/CutoutPlot.o\
[332]215        $(UTILDIR)/mycpgplot.o\
[1250]216        $(UTILDIR)/PlottingUtilities.o\
[332]217        $(UTILDIR)/pgplot_related.o
[318]218endif
219
[108]220duchamp : $(OBJECTS)
[384]221        $(LINK) -o $(EXEC) $(OBJECTS) $(LIBS)
[107]222
[389]223lib     : $(OBJECTS)
224        $(AR) $(LIB) $(OBJECTS)
[719]225        $(RANLIB) $(LIB)
[1224]226        $(SHAREDLIB) $(CINC) $(LIBS) -o $(LIBSO) $(OBJECTS)
227#       $(CXX) $(SHAREDFLAGS) -o $(LIBSO) $(OBJECTS)
[389]228
[149]229createTestImage : $(TESTDIR)/createTestImage.o $(UTILDIR)/get_random_spectrum.o
[148]230        $(CXX) -o createTestImage.x\
[149]231        $(TESTDIR)/createTestImage.o $(UTILDIR)/get_random_spectrum.o\
[148]232        $(CFITSIOLIB) @LIBS@
233
[338]234install :
235        $(INSTALL) -d -m 2755 $(INSTALLDIR)
236        $(INSTALL) -m 755 $(EXEC) $(INSTALLDIR)
237        $(RM) $(INSTALLDIR)/$(EXEC-STUB)
[514]238        cd $(INSTALLDIR) && $(LN_S) $(EXEC) $(EXEC-STUB)
[432]239        -test ! -f $(LIB) || $(INSTALL) -d -m 2755 $(LIBDIR)
240        -test ! -f $(LIB) || $(INSTALL) -m 644 $(LIB) $(LIBDIR)
[1292]241        -test ! -f $(LIB) || ( cd $(LIBDIR) && $(RM) $(LIB_LN) && $(LN_S) $(LIB) $(LIB_LN) )
242        -test ! -f $(LIBSO) || ( $(INSTALL) -m 755 $(LIBSO) $(LIBDIR) && \
[1238]243                if [ "@SHRLN@" != "" ] ; then \
244                        cd $(LIBDIR) && $(RM) $(LIBSO_LN) && $(LN_S) $(LIBSO) $(LIBSO_LN); \
[1292]245                fi )
[389]246        $(INSTALL) -d -m 2755 $(INCDIR)
247        $(INSTALL) -m 644 $(BASE)/*.hh $(INCDIR)
[397]248        $(INSTALL) -m 644 $(BASE)/*.h $(INCDIR)
[389]249        $(INSTALL) -d -m 2755 $(INCDIR)/Cubes
250        $(INSTALL) -m 644 $(CUBESDIR)/*.hh $(INCDIR)/Cubes
251        $(INSTALL) -d -m 2755 $(INCDIR)/ATrous
252        $(INSTALL) -m 644 $(ATROUSDIR)/*.hh $(INCDIR)/ATrous
253        $(INSTALL) -d -m 2755 $(INCDIR)/Detection
254        $(INSTALL) -m 644 $(DETECTIONDIR)/*.hh $(INCDIR)/Detection
[807]255        $(INSTALL) -d -m 2755 $(INCDIR)/FitsIO
256        $(INSTALL) -m 644 $(FITSIODIR)/*.hh $(INCDIR)/FitsIO
[1243]257        $(INSTALL) -d -m 2755 $(INCDIR)/Plotting
258        $(INSTALL) -m 644 $(PLOTDIR)/*.hh $(INCDIR)/Plotting
[389]259        $(INSTALL) -d -m 2755 $(INCDIR)/PixelMap
260        $(INSTALL) -m 644 $(PIXELMAPDIR)/*.hh $(INCDIR)/PixelMap
[1068]261        $(INSTALL) -d -m 2755 $(INCDIR)/Outputs
262        $(INSTALL) -m 644 $(OUTPUTSDIR)/*.hh $(INCDIR)/Outputs
[389]263        $(INSTALL) -d -m 2755 $(INCDIR)/Utils
264        $(INSTALL) -m 644 $(UTILDIR)/*.hh $(INCDIR)/Utils
[713]265        $(INSTALL) -m 644 $(UTILDIR)/*.tcc $(INCDIR)/Utils
[338]266
[107]267$(OBJECTS) : $(HEADS)
268
269.cc.o:
270        $(CXX) -c $< $(CINC) -o $@
271
272.c.o:
273        $(CC) -c $< $(CINC) -o $@
274
275clean :
[1243]276        rm -f $(BASE)/*.o $(ATROUSDIR)/*.o $(CUBESDIR)/*.o $(FITSIODIR)/*.o $(DETECTIONDIR)/*.o $(UTILDIR)/*.o $(PIXELMAPDIR)/*.o $(PLOTDIR)/*.o $(LIB) $(LIBSO)
[1088]277
278cleanest: clean
279        rm -rf Makefile config.log config.status src/config.h $(EXEC)
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