source: branches/NewStructure/src/PixelMap/Object2D.cc @ 1441

// -----------------------------------------------------------------------
// Object2D.cc: Member functions for the Object2D class.
// -----------------------------------------------------------------------
// Copyright (C) 2006, Matthew Whiting, ATNF
//
// This program is free software; you can redistribute it and/or modify it
// under the terms of the GNU General Public License as published by the
// Free Software Foundation; either version 2 of the License, or (at your
// option) any later version.
//
// Duchamp is distributed in the hope that it will be useful, but WITHOUT
// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
// FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
// for more details.
//
// You should have received a copy of the GNU General Public License
// along with Duchamp; if not, write to the Free Software Foundation,
// Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA
//
// Correspondence concerning Duchamp may be directed to:
//    Internet email: Matthew.Whiting [at] atnf.csiro.au
//    Postal address: Dr. Matthew Whiting
//                    Australia Telescope National Facility, CSIRO
//                    PO Box 76
//                    Epping NSW 1710
//                    AUSTRALIA
// -----------------------------------------------------------------------
#include <duchamp/PixelMap/Object2D.hh>
#include <duchamp/PixelMap/Scan.hh>
#include <duchamp/PixelMap/Voxel.hh>
#include <iostream>
#include <vector>
#include <list>
#include <algorithm>
#include <math.h>

namespace PixelInfo
{

  Object2D::Object2D()
  {
    this->numPix = 0;
  }

  Object2D::Object2D(const Object2D& o)
  {
    operator=(o);
  }  

  Object2D& Object2D::operator= (const Object2D& o)
  {
    if(this == &o) return *this;
    this->scanlist  = o.scanlist;
    this->numPix    = o.numPix;
    this->xSum      = o.xSum;
    this->ySum      = o.ySum;
    this->xmin      = o.xmin;
    this->ymin      = o.ymin;
    this->xmax      = o.xmax;
    this->ymax      = o.ymax;
    this->majorAxis = o.majorAxis;
    this->minorAxis = o.minorAxis;
    this->posAngle  = o.posAngle;
    return *this;
  }  
  //------------------------------------------------------

  Object2D operator+ (Object2D lhs, Object2D rhs)
  {
    Object2D output = lhs;
    for(std::vector<Scan>::iterator s=rhs.scanlist.begin();s!=rhs.scanlist.end();s++)
      output.addScan(*s);
    return output;
  }

  //------------------------------------------------------
  void Object2D::addPixel(long x, long y)
  {
    ///  This function has three parts to it:
    ///  <ul><li> First, it searches through the existing scans to see if 
    ///            a) there is a scan of the same y-value present, and 
    ///            b) whether the (x,y) pixel lies in or next to an existing 
    ///            Scan. If so, it is added and the Scan is grown if need be.
    ///            If this isn't the case, a new Scan of length 1 is added to 
    ///            the list. 
    ///      <li> If the Scan list was altered, all are checked to see whether 
    ///            there is now a case of Scans touching. If so, they are 
    ///            combined and added to the end of the list.
    ///      <li> If the pixel was added, the parameters are updated and the 
    ///           pixel counter incremented.
    ///  </ul>


    bool flagDone=false,flagChanged=false, isNew=false;

    for (std::vector<Scan>::iterator scan=this->scanlist.begin(); !flagDone && scan!=this->scanlist.end(); scan++){
      if(y == scan->itsY){ // if the y value is already in the list
        if(scan->isInScan(x,y)) flagDone = true; // pixel already here.
        else{ // it's a new pixel!
          if((x==(scan->itsX-1)) || (x == (scan->itsX+scan->itsXLen)) ){
            // if it is adjacent to the existing range, add to that range
            if(x==(scan->itsX-1)) scan->growLeft();
            else                  scan->growRight();
            flagDone = true;
            flagChanged = true;
            isNew = true;
          }
        }     
      }
    }

    if(!flagDone){ 
      // we got to the end of the scanlist, so there is no pre-existing scan with this y value
      // add a new scan consisting of just this pixel
      Scan newOne(y,x,1);
      this->scanlist.push_back(newOne);
      isNew = true;
    }
    else if(flagChanged){ 
      // this is true only if one of the pre-existing scans has changed
      //
      // need to clean up, to see if there is a case of two scans when
      // there should be one. Only need to look at scans with matching
      // y-value
      //
      // because there has been only one pixel added, only 2 AT MOST
      // scans will need to be combined, so once we meet a pair that
      // overlap, we can finish.

      bool combined = false;
      std::vector<Scan>::iterator scan1=this->scanlist.begin(),scan2;
      for (; !combined && scan1!=this->scanlist.end(); scan1++){
        if(scan1->itsY==y){
          scan2=scan1;
          scan2++;
          for(; !combined && scan2!=this->scanlist.end(); scan2++){
            if(scan2->itsY==y){
              combined = scan1->addScan(*scan2);
              if(combined){
                this->scanlist.erase(scan2);
              }
            }   
          }
        }
      }

    }

    if(isNew){  
      // update the centres, mins, maxs and increment the pixel counter
      if(this->numPix==0){
        this->xSum = this->xmin = this->xmax = x;
        this->ySum = this->ymin = this->ymax = y;
      }
      else{
        this->xSum += x;
        this->ySum += y;
        if(x<this->xmin) this->xmin = x;
        if(x>this->xmax) this->xmax = x;
        if(y<this->ymin) this->ymin = y;
        if(y>this->ymax) this->ymax = y;
      }
      this->numPix++;
    }

  }
  //------------------------------------------------------

  void Object2D::addScan(Scan &scan)
  {
    long y=scan.getY();
    for(long x=scan.getX();x<=scan.getXmax();x++) this->addPixel(x,y);

  }
  //------------------------------------------------------

  bool Object2D::isInObject(long x, long y)
  {

    std::vector<Scan>::iterator scn;
    bool returnval=false;
    for(scn=this->scanlist.begin();scn!=this->scanlist.end()&&!returnval;scn++){

      returnval = ((y == scn->itsY) && (x>= scn->itsX) && (x<=scn->getXmax()));

    }
       
    return returnval;

  }
  //------------------------------------------------------

  std::ostream& operator<< ( std::ostream& theStream, Object2D& obj)
  {
    if(obj.scanlist.size()>1) obj.order();
    for(std::vector<Scan>::iterator s=obj.scanlist.begin();s!=obj.scanlist.end();s++)
      theStream << *s << "\n";
    theStream<<"---\n";
    return theStream;

  }
  //------------------------------------------------------

  void Object2D::calcParams()
  {
    this->xSum = 0;
    this->ySum = 0;
    std::vector<Scan>::iterator s;
    for(s=this->scanlist.begin();s!=this->scanlist.end();s++){

      if(s==this->scanlist.begin()){
        this->ymin = this->ymax = s->itsY;
        this->xmin = s->itsX;
        this->xmax = s->getXmax();
      }
      else{
        if(this->ymin>s->itsY)    this->ymin = s->itsY;
        if(this->xmin>s->itsX)    this->xmin = s->itsX;
        if(this->ymax<s->itsY)    this->ymax = s->itsY;
        if(this->xmax<s->getXmax()) this->xmax = s->getXmax();
      }

      this->ySum += s->itsY*s->getXlen();
      for(int x=s->itsX;x<=s->getXmax();x++)
        this->xSum += x;

    }

  }
  //------------------------------------------------------

  void Object2D::cleanup()
  {
    std::vector<Scan>::iterator s1=this->scanlist.begin(),s2;
    for (; s1!=this->scanlist.end(); s1++){
      s2=s1; s2++;
      for (; s2!=this->scanlist.end(); s2++){

        if(overlap(*s1,*s2)){
          s1->addScan(*s2);
          this->scanlist.erase(s2);
        }
      } 
    }

  }
  //------------------------------------------------------

  long Object2D::getNumDistinctY()
  {
    std::vector<long> ylist;
    if(this->scanlist.size()==0) return 0;
    if(this->scanlist.size()==1) return 1;
    std::vector<Scan>::iterator scn;
    for(scn=this->scanlist.begin();scn!=this->scanlist.end();scn++){
      bool inList = false;
      unsigned int j=0;
      long y = scn->itsY;
      while(!inList && j<ylist.size()){
        if(y==ylist[j]) inList=true;
        j++;
      };
      if(!inList) ylist.push_back(y);
    }
    return ylist.size();
  }
  //------------------------------------------------------

  long Object2D::getNumDistinctX()
  {
    std::vector<long> xlist;
    if(this->scanlist.size()==0) return 0;
    if(this->scanlist.size()==1) return 1;
    std::vector<Scan>::iterator scn;
    for(scn=this->scanlist.begin();scn!=this->scanlist.end();scn++){
      for(int x=scn->itsX;x<scn->getXmax();x++){
        bool inList = false;
        unsigned int j=0;
        while(!inList && j<xlist.size()){
          if(x==xlist[j]) inList=true;
          j++;
        };
        if(!inList) xlist.push_back(x);
      }
    }
    return xlist.size();
  }
  //------------------------------------------------------

  bool Object2D::scanOverlaps(Scan &scan)
  {
    bool returnval = false;
    for(std::vector<Scan>::iterator s=this->scanlist.begin();!returnval&&s!=this->scanlist.end();s++){
      returnval = returnval || s->overlaps(scan);
    }
    return returnval;
  }

  //------------------------------------------------------

  void Object2D::addOffsets(long xoff, long yoff)
  {
    std::vector<Scan>::iterator scn;
    for(scn=this->scanlist.begin();scn!=this->scanlist.end();scn++)
      scn->addOffsets(xoff,yoff);
    this->xSum += xoff*numPix;
    this->xmin += xoff; xmax += xoff;
    this->ySum += yoff*numPix;
    this->ymin += yoff; ymax += yoff;
  }

  //------------------------------------------------------

  bool Object2D::findEllipse(bool weightByFlux, float *array, size_t xdim, size_t ydim, int xzero, int yzero, float x0, float y0)
  {
    bool result=true;
    double sumxx=0.,sumyy=0.,sumxy=0.,sumflux=0.;
    int ct=0;
    std::vector<Scan>::iterator scn=this->scanlist.begin();
    for(;scn!=this->scanlist.end();scn++){
      int y = scn->itsY;
      float yoff=scn->itsY - y0;
      for(int x=scn->itsX;x<=scn->getXmax();x++){
          ct++;
        float xoff=x-x0;
        float flux = weightByFlux ? array[(x-xzero)+xdim*(y-yzero)] : 1;
        sumxx += (xoff*xoff*flux);
        sumyy += (yoff*yoff*flux);
        sumxy += (xoff*yoff*flux);
        sumflux += flux;
      }
    }
    
    if(ct>0){
        sumxx /= sumflux;
        sumxy /= sumflux;
        sumyy /= sumflux;
    }

    this->posAngle = 0.5 * atan2( 2*sumxy , (sumxx-sumyy) ) + M_PI/2.;
    this->posAngle = fmod(this->posAngle, 2.*M_PI);
    if(this->posAngle > M_PI) this->posAngle -= 2.*M_PI;
    double plusroot = sumxx + sumyy + sqrt((sumxx-sumyy)*(sumxx-sumyy) + 4.*sumxy*sumxy);
    result = ( plusroot > 0 );
    double minusroot = sumxx + sumyy - sqrt((sumxx-sumyy)*(sumxx-sumyy) + 4.*sumxy*sumxy);
    result = result && ( minusroot > 0 );
    if(result){
      this->majorAxis = sqrt( 2. * plusroot );
      this->minorAxis = sqrt( 2. * minusroot );
      this->minorAxis = std::max(this->minorAxis,0.1);
    }
    else this->majorAxis = this->minorAxis = 0.;
    return result;
  }


  //------------------------------------------------------

  double Object2D::getPositionAngle()
  {

    int sumxx=0;
    int sumyy=0;
    int sumxy=0;
    std::vector<Scan>::iterator scn=this->scanlist.begin();
    for(;scn!=this->scanlist.end();scn++){
      sumyy += (scn->itsY*scn->itsY)*scn->itsXLen;
      for(int x=scn->itsX;x<=scn->getXmax();x++){
        sumxx += x*x;
        sumxy += x*scn->itsY;
      }
    }

    // Calculate net moments
    double mxx = sumxx - this->xSum*this->xSum / double(this->numPix);
    double myy = sumyy - this->ySum*this->ySum / double(this->numPix);
    double mxy = sumxy - this->xSum*this->ySum / double(this->numPix);

    if(mxy==0){
      if(mxx>myy) return M_PI/2.;
      else return 0.;
    }

    // Angle of the minimum moment
    double tantheta = (mxx - myy + sqrt( (mxx-myy)*(mxx-myy) + 4.*mxy*mxy))/(2.*mxy);

    return atan(tantheta);
  }

  //------------------------------------------------------

  std::pair<double,double> Object2D::getPrincipalAxes()
  {

    double theta = this->getPositionAngle();
    double x0 = this->getXaverage();
    double y0 = this->getYaverage();
    std::vector<Scan>::iterator scn=this->scanlist.begin();
    double maj,min,majMax=0.,majMin=0.,minMax=0.,minMin=0.;
    for(;scn!=this->scanlist.end();scn++){
      for(int x=scn->itsX;x<=scn->getXmax();x++){
        maj = (x-x0+0.5)*cos(theta) + (scn->itsY-y0+0.5)*sin(theta);
        min = (x-x0+0.5)*sin(theta) + (scn->itsY-y0+0.5)*cos(theta);
        majMax=std::max(maj,majMax);
        majMin=std::min(maj,majMin);
        minMax=std::max(min,minMax);
        minMin=std::min(min,minMin);
      }
    }

    std::pair<double,double> axes;
    axes.first=std::max(majMax-majMin,1.);
    axes.second=std::max(minMax-minMin,1.);
    return axes;

  }


  //------------------------------------------------------


  bool Object2D::canMerge(Object2D &other, float threshS, bool flagAdj)
  {
    long gap;
    if(flagAdj) gap = 1;
    else gap = long( ceil(threshS) );
    bool near = this->isNear(other,gap);
    if(near) return this->isClose(other,threshS,flagAdj);
    else return near;
  }

  //------------------------------------------------------

  bool Object2D::isNear(Object2D &other, long gap)
  {
    bool areNear;
    // Test X ranges
    if((this->xmin-gap)<other.xmin) areNear=((this->xmax+gap)>=other.xmin);
    else areNear=(other.xmax>=(this->xmin-gap));
    // Test Y ranges
    if(areNear){
      if((this->ymin-gap)<other.ymin) areNear=areNear&&((this->ymax+gap)>=other.ymin);
      else areNear=areNear&&(other.ymax>=(this->ymin-gap));
    }
    return areNear;
  }

  //------------------------------------------------------

  bool Object2D::isClose(Object2D &other, float threshS, bool flagAdj)
  {

    long gap = long(ceil(threshS));
    if(flagAdj) gap=1;

    bool close = false;

    long ycommonMin=std::max(this->ymin-gap,other.ymin)-gap;
    long ycommonMax=std::min(this->ymax+gap,other.ymax)+gap;

    std::vector<Scan>::iterator iter1,iter2;
    for(iter1=this->scanlist.begin();!close && iter1!=this->scanlist.end();iter1++){
      if(iter1->itsY >= ycommonMin && iter1->itsY<=ycommonMax){
        for(iter2=other.scanlist.begin();!close && iter2!=other.scanlist.end();iter2++){
          if(iter2->itsY >= ycommonMin && iter2->itsY<=ycommonMax){
              
            if(abs(iter1->itsY-iter2->itsY)<=gap){
              if(flagAdj) {
                if((iter1->itsX-gap)>iter2->itsX) close=((iter2->itsX+iter2->itsXLen-1)>=(iter1->itsX-gap));
                else close = ( (iter1->itsX+iter1->itsXLen+gap-1)>=iter2->itsX);
              }
              else close = (minSep(*iter1,*iter2) <= threshS);
            }

          }
        }
      }
    }
            
    return close;
    
  }



}