source: branches/NewStructure/src/Finder/DuchampFinder.hh @ 1441

#ifndef DUCHAMP_FINDER_H_
#define DUCHAMP_FINDER_H_

#include <iostream>
#include <duchamp/duchamp.hh>
#include <duchamp/param.hh>
#include <duchamp/fitsHeader.hh>
#include <duchamp/DataArrays/SmartMask.hh>
#include <duchamp/DataArrays/AstroImage.hh>
#include <duchamp/Catalogues/Catalogue.hh>
#include <duchamp/Detection/detection.hh>

namespace duchamp
{

    class DuchampFinder
    {
    public:
        DuchampFinder(){};
        DuchampFinder(const int argc, const char ** argv);
        DuchampFinder(const DuchampFinder& other);
        DuchampFinder& operator= (const DuchampFinder& other);
        virtual ~DuchampFinder(){};
        
        void readParams();
        void readHeader();
        void readData();
        
        void preprocess();
        void invert();
        void smooth();
        void atrousRecon();

        void subtractBaselines();
        void replaceBaselines();
        
        void readFromCatalogue();
        
        FitsHeader *header(){return &itsHeader;};
        Param *par(){return &itsParam;};
        Statistics::StatsContainer<float> *stats(){return &itsStats;};
        AstroImage<float> *image(){return &itsImage;};
        AstroImage<float> *recon(){return &itsRecon;};
        AstroImage<float> *baseline(){return &itsBaselines;};
        SmartMask         *mask(){return &itsSmartMask;};
        AstroImage<short> *detectmap(){return &itsDetectMap;};
      

    protected:
        FitsHeader                        itsHeader;
        Param                             itsParam;
        Statistics::StatsContainer<float> itsStats;
        AstroImage<float>                 itsImage;
        AstroImage<float>                 itsRecon;
        AstroImage<float>                 itsBaselines;
        AstroImage<short>                 itsDetectMap;
        SmartMask                         itsSmartMask;
        Catalogue<Detection>              itsCatalogue;
    };
    
}

#endif