1 | % ----------------------------------------------------------------------- |
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2 | % Guide.tex: Base latex file for the User's Guide. |
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3 | % ----------------------------------------------------------------------- |
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4 | % Copyright (C) 2006, Matthew Whiting, ATNF |
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5 | % |
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6 | % This program is free software; you can redistribute it and/or modify it |
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7 | % under the terms of the GNU General Public License as published by the |
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8 | % Free Software Foundation; either version 2 of the License, or (at your |
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9 | % option) any later version. |
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10 | % |
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11 | % Duchamp is distributed in the hope that it will be useful, but WITHOUT |
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12 | % ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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13 | % FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License |
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14 | % for more details. |
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15 | % |
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16 | % You should have received a copy of the GNU General Public License |
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17 | % along with Duchamp; if not, write to the Free Software Foundation, |
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18 | % Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA |
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19 | % |
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20 | % Correspondence concerning Duchamp may be directed to: |
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21 | % Internet email: Matthew.Whiting [at] atnf.csiro.au |
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22 | % Postal address: Dr. Matthew Whiting |
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23 | % Australia Telescope National Facility, CSIRO |
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24 | % PO Box 76 |
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25 | % Epping NSW 1710 |
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26 | % AUSTRALIA |
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27 | % ----------------------------------------------------------------------- |
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28 | %\documentclass[11pt,a4paper]{article} |
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29 | \documentclass[10pt,a4paper]{article} |
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30 | %\documentclass[12pt,a4paper]{report} |
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31 | |
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32 | %%%%%% LINE SPACING %%%%%%%%%%%% |
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33 | \usepackage{setspace} |
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34 | \singlespacing |
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35 | %\onehalfspacing |
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36 | %\doublespacing |
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37 | |
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38 | %Define a test for doing PDF format -- use different code below |
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39 | \newif\ifPDF |
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40 | \ifx\pdfoutput\undefined\PDFfalse |
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41 | \else\ifnum\pdfoutput > 0 \PDFtrue |
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42 | \else\PDFfalse |
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43 | \fi |
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44 | \fi |
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45 | |
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46 | %\textwidth=165 mm |
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47 | %\textheight=245 mm |
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48 | %\topmargin=0 mm |
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49 | %\oddsidemargin=0 mm |
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50 | %\parindent=6 mm |
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51 | |
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52 | \usepackage{amsmath} |
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53 | \usepackage{amsfonts} |
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54 | \usepackage{xspace} |
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55 | \usepackage[sort]{natbib} |
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56 | \bibpunct[,]{(}{)}{;}{a}{}{,} |
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57 | %\usepackage{biblabelurl} |
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58 | |
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59 | %\newcommand{\secA}{\chapter} |
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60 | %\newcommand{\secB}{\section} |
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61 | %\newcommand{\secC}{\subsection} |
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62 | |
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63 | \newcommand{\secA}{\section} |
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64 | \newcommand{\secB}{\subsection} |
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65 | \newcommand{\secC}{\subsubsection} |
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66 | |
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67 | \newcommand{\version}{1.2.2} |
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68 | |
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69 | \newcommand{\eg}{e.g.\ } |
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70 | \newcommand{\ie}{i.e.\ } |
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71 | \newcommand{\hi}{H\textsc{i}\xspace} |
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72 | \newcommand{\hipass}{\textsc{hipass}\xspace} |
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73 | \newcommand{\duchamp}{\emph{Duchamp}\xspace} |
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74 | \newcommand{\atrous}{\textit{{\`a} trous}\xspace} |
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75 | \newcommand{\Atrous}{\textit{{\`A} trous}\xspace} |
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76 | \newcommand{\diff}{{\rm d}} |
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77 | \newcommand{\entrylabel}[1]{\mbox{\texttt{#1:}}\hfil} |
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78 | \newenvironment{entry} |
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79 | {\begin{list}{}% |
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80 | {\renewcommand{\makelabel}{\entrylabel}% |
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81 | \setlength{\leftmargin}{33mm}% |
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82 | \setlength{\labelwidth}{33mm}% |
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83 | \setlength{\labelsep}{0pt}% |
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84 | \setlength{\itemsep}{3pt}% |
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85 | \setlength{\parsep}{2pt}% |
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86 | }% |
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87 | }% |
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88 | {\end{list}} |
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89 | |
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90 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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91 | |
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92 | \newlength{\MyLen} |
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93 | \newcommand{\Lentrylabel}[1]{% |
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94 | \settowidth{\MyLen}{\texttt{#1:}}% |
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95 | % \setlength{\labelwidth}{30mm}% |
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96 | \ifthenelse{\lengthtest{\MyLen > \labelwidth}}% |
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97 | {\parbox[b]{\labelwidth}% term > labelwidth |
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98 | {\makebox[0pt][l]{\texttt{#1:}}\\}}% |
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99 | {\texttt{#1:}}% term < labelwidth |
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100 | \hfil\relax} |
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101 | |
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102 | \newenvironment{Lentry}% |
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103 | {\renewcommand{\entrylabel}{\Lentrylabel}\begin{entry} |
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104 | \setlength{\itemsep}{3pt}% |
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105 | % \setlength{\leftmargin}{25mm}% |
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106 | % \setlength{\itemindent}{0mm}% |
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107 | % \setlength{\listparindent}{0mm}% |
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108 | \setlength{\labelsep}{0mm}% |
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109 | }% |
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110 | {\end{entry}% |
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111 | } |
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112 | |
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113 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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114 | |
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115 | \newcommand{\Mentrylabel}[1]% |
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116 | {\raisebox{0pt}[1ex][0pt]{\makebox[\labelwidth][l]% |
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117 | {\parbox[t]{\labelwidth}{\hspace{0pt}\texttt{#1}}}}} |
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118 | \newenvironment{Mentry} |
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119 | {\renewcommand{\entrylabel}{\Mentrylabel}\begin{entry}% |
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120 | \setlength{\labelwidth}{33mm}% |
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121 | \setlength{\leftmargin}{35mm}% |
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122 | }% |
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123 | {\end{entry}% |
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124 | } |
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125 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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126 | |
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127 | |
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128 | %%%%%%% FANCY HEADINGS %%%%%%%%%% |
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129 | %\usepackage{fancyheadings} |
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130 | %\pagestyle{fancyplain} |
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131 | %\addtolength{\headheight}{1.6pt} |
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132 | %\addtolength{\headwidth}{\marginparsep} |
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133 | %\addtolength{\headwidth}{\marginparwidth} |
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134 | %\renewcommand{\secAmark}[1] |
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135 | % {\markboth{#1}{}} |
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136 | %\renewcommand{\secBmark}[1] |
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137 | % {\markright{\thesection\ #1}} |
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138 | %\lhead[\fancyplain{}{\bfseries\thepage}] |
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139 | % {\fancyplain{}{\bfseries\rightmark}} |
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140 | %\rhead[\fancyplain{}{\bfseries\leftmark}] |
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141 | % {\fancyplain{}{\bfseries\thepage}} |
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142 | %\cfoot{} |
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143 | |
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144 | % If we are creating a PDF, use different options for graphicx, hyperref. |
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145 | \ifPDF |
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146 | \usepackage[pdftex]{graphicx,color} |
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147 | \usepackage[pdftex,bookmarks]{hyperref} |
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148 | \hypersetup{colorlinks=true,% |
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149 | citecolor=red,% |
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150 | filecolor=red,% |
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151 | linkcolor=red,% |
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152 | urlcolor=red,% |
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153 | } |
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154 | \else |
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155 | \usepackage[dvips]{graphicx} |
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156 | \usepackage[dvips]{hyperref} |
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157 | \fi |
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158 | |
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159 | \usepackage{lscape} |
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160 | \usepackage[dvips]{rotating} |
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161 | %\rotdriver{dvips} |
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162 | |
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163 | \pagestyle{headings} |
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164 | \begin{document} |
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165 | |
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166 | \ifPDF |
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167 | \pdfbookmark[2]{Title Page}{title} |
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168 | \fi |
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169 | \newlength{\centreoff} |
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170 | \setlength{\centreoff}{-0.5\oddsidemargin} |
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171 | \addtolength{\centreoff}{0.5\evensidemargin} |
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172 | \thispagestyle{empty} |
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173 | \vspace*{\stretch{1}} |
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174 | \noindent\hspace*{\centreoff}% |
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175 | \makebox[0pt][l]{\begin{minipage}{\textwidth} |
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176 | \flushright |
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177 | {\Huge\bfseries Source Detection with \duchamp\\[2ex]} |
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178 | {\huge\bfseries A User's Guide |
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179 | |
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180 | } |
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181 | \noindent\rule[-1ex]{\textwidth}{3pt} |
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182 | \end{minipage}} |
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183 | |
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184 | \vspace{\stretch{1}} |
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185 | \noindent\hspace*{\centreoff}% |
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186 | \makebox[0pt][l]{\begin{minipage}{\textwidth} |
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187 | \flushright |
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188 | {\bfseries |
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189 | Matthew Whiting\\ |
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190 | Australia Telescope National Facility\\ |
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191 | CSIRO\\[3ex]} |
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192 | Duchamp version~\version\\ |
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193 | October 29, 2012 |
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194 | \end{minipage}} |
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195 | |
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196 | \begin{figure}[!h] |
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197 | %\begin{center} |
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198 | \includegraphics[width=\textwidth]{cover_image} |
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199 | %\end{center} |
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200 | \end{figure} |
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201 | |
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202 | %\newpage |
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203 | \ifPDF |
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204 | \pdfbookmark[2]{Contents}{contents} |
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205 | \fi |
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206 | \tableofcontents |
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207 | |
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208 | \newpage |
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209 | \input{intro} %Introduction and getting going quickly |
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210 | \newpage |
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211 | \input{userInputs} %User Inputs |
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212 | \newpage |
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213 | \input{executionFlow} %What \duchamp is doing |
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214 | \newpage |
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215 | \input{outputs} %Outputs |
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216 | \newpage |
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217 | \newpage |
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218 | \input{hints} %Notes and hints on the use of \duchamp |
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219 | \newpage |
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220 | \input{future} %Future developments |
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221 | \newpage |
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222 | \input{acknowledgements} %Acknowledgements |
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223 | |
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224 | \newpage |
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225 | \ifPDF |
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226 | \pdfbookmark[1]{References}{references} |
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227 | \fi |
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228 | %\bibliographystyle{plainnat} |
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229 | %%\bibliographystyle{hapj} |
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230 | %%\bibliographystyle{plainnaturl} |
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231 | %%\bibliographystyle{mn2e} |
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232 | %%\bibliography{mnemonic,MasterBibliography} |
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233 | %\bibliography{guide} |
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234 | %%\bibliography{Guide-new} |
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235 | |
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236 | %\newpage |
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237 | %\ifPDF |
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238 | %\pdfbookmark[1]{References}{references} |
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239 | %\fi |
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240 | %\ifPDF |
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241 | \input{Guide-URL-bib} |
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242 | %\else |
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243 | %\input{Guide-noURL-bib} |
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244 | %\fi |
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245 | |
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246 | \appendix |
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247 | \newpage |
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248 | \input{app-install} %Obtaining and installing \duchamp |
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249 | \newpage |
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250 | \input{app-param} %Available parameters |
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251 | \newpage |
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252 | \input{app-paramEx} %Example parameter files |
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253 | \newpage |
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254 | \input{app-resultsEx} %Example results files |
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255 | \newpage |
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256 | \input{app-VOTable} %Example VOTable output |
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257 | \newpage |
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258 | \input{app-Karma} %Example Karma annotation file output |
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259 | \newpage |
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260 | \input{app-DS9} %Example DS9 region file output |
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261 | \newpage |
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262 | \input{app-stats} %Robust statistics for a Normal distribution |
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263 | \newpage |
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264 | \input{app-waveletNoise} %How Gaussian noise changes with wavelet scale |
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265 | |
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266 | |
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267 | \end{document} |
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