Custom Query (241 matches)

yesterday I started reducing some Mopra data remotely using ASAP installed on hydra at Epping, however, when I tried to finish it off this morning I got the following error message:

hydra>asap

Loading ASAP... X Error of failed request: BadAtom (invalid Atom parameter)

Major opcode of failed request: 20 (X_GetProperty)
Atom id in failed request: 0x205
Serial number of failed request: 11
Current serial number in output stream: 11

I also tried to get asap working on draco but got the same error message.

Some rpf files from Parkes cannot be loaded into ASAP with the command data = scantable('file.rpf')

The error that it returns of a couple of files is

Traceback (most recent call last): File "<ipython console>", line 1, in ? File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/asap/scantable.py", line 70, in __init__

  self._fill([filename], unit, average)
File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/asap/scantable.py", line 1743, in _fill

  r._read() RuntimeError: ArrayBase::Array(const IPosition&) - Negative shape

We have also tried loading the files in with commands r = reader('2008-06-20_0425-P625.rpf') data = r.read()

and get a similar error, as follows

Traceback (most recent call last):

  File "<ipython console>", line 1, in ? File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/asap/asapreader.py", line 57, in read
    stfiller._read(self) RuntimeError: ArrayBase::Array(const IPosition&) - Negative shape

if we then enter data = r.read() again it does it without error.

We have also loaded the data into SPC without error. I can email one of the data files if you like?

The plotter is unable to plot scans that have been averaged together with the command

avtime = final.average_time(align=True)

the error when trying to plot 'avtime' with plotter.plot(avtime) is

Warning: invalid value encountered in reduce Warning: invalid value encountered in reduce

Traceback (most recent call last):

File "<ipython console>", line 1, in ? File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/asap/asapplotter.py", line 97, in plot

self._plotter.release()

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/asap/asaplotbase.py", line 381, in release

self.show()

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/asap/asaplotgui.py", line 187, in show

self.canvas.show()

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/matplotlib/backends/backend_tkagg.py", line 154, in draw

FigureCanvasAgg.draw(self)

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/matplotlib/backends/backend_agg.py", line 392, in draw

self.figure.draw(renderer)

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/matplotlib/figure.py", line 544, in draw

for a in self.axes: a.draw(renderer)

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/matplotlib/axes.py", line 1063, in draw

a.draw(renderer)

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/matplotlib/axis.py", line 547, in draw

self.major.formatter.set_locs(majorLocs)

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/matplotlib/ticker.py", line 315, in set_locs

self._set_format()

File "/Library/Frameworks/Python.framework/Versions/2.4/lib/python2.4/site-packages/matplotlib/ticker.py", line 356, in _set_format

sigfigs = [len(str('%1.3f'% loc).split('.')[1].rstrip('0')) \

IndexError: list index out of range

This only occurs with the align=True option, as if this creates some nan values that plotter cannot cope with. Plotter is able to plot these scans if you manually set the range the plotter should plot.