[1840] | 1 | import sys |
---|
| 2 | import os |
---|
| 3 | import shutil |
---|
[1600] | 4 | import datetime |
---|
[1903] | 5 | from nose.tools import * |
---|
[2797] | 6 | import asap |
---|
[1840] | 7 | from asap import scantable, selector, mask_not |
---|
| 8 | from asap.logging import asaplog |
---|
[1903] | 9 | # no need for log messages |
---|
[1824] | 10 | asaplog.disable() |
---|
[1544] | 11 | |
---|
[1840] | 12 | def tempdir_setup(): |
---|
| 13 | os.makedirs("test_temp") |
---|
| 14 | |
---|
| 15 | def tempdir_teardown(): |
---|
| 16 | shutil.rmtree("test_temp", True) |
---|
| 17 | |
---|
| 18 | class TestScantable(object): |
---|
| 19 | def setup(self): |
---|
[2797] | 20 | pth = os.path.dirname(__file__) |
---|
| 21 | s = scantable(os.path.join(pth, "data", "MOPS.rpf"), average=True) |
---|
[1824] | 22 | sel = selector() |
---|
| 23 | # make sure this order is always correct - in can be random |
---|
| 24 | sel.set_order(["SCANNO", "POLNO"]) |
---|
| 25 | s.set_selection(sel) |
---|
| 26 | self.st = s.copy() |
---|
[1725] | 27 | restfreqs = [86.243] # 13CO-1/0, SiO the two IF |
---|
| 28 | self.st.set_restfreqs(restfreqs,"GHz") |
---|
[1544] | 29 | |
---|
| 30 | def test_init(self): |
---|
[2797] | 31 | fname = os.path.join(os.path.dirname(__file__), "data", "MOPS.rpf") |
---|
| 32 | st = scantable(fname, average=False) |
---|
[1840] | 33 | assert_equal(st.ncycle(), 32) |
---|
[2797] | 34 | st = scantable(fname, average=True) |
---|
[1840] | 35 | assert_equal(st.ncycle(), 2) |
---|
[2797] | 36 | st = scantable(fname, unit="Jy") |
---|
[1840] | 37 | assert_equal(st.get_fluxunit(), "Jy") |
---|
[2797] | 38 | st = scantable(fname, unit="K") |
---|
[1840] | 39 | assert_equal(st.get_fluxunit(), "K") |
---|
[2797] | 40 | assert_raises(RuntimeError, scantable, fname, unit="junk") |
---|
| 41 | st = scantable([fname,fname], average=False) |
---|
[1840] | 42 | assert_equal(st.nscan(), 4) |
---|
[1544] | 43 | |
---|
| 44 | def test_copy(self): |
---|
| 45 | st = self.st.copy() |
---|
[1840] | 46 | assert_not_equal(id(st), id(self.st)) |
---|
[1592] | 47 | |
---|
[1544] | 48 | def test_drop_scan(self): |
---|
| 49 | st = self.st.drop_scan([1]) |
---|
[1840] | 50 | assert_equal(st.nscan(), 1) |
---|
[1544] | 51 | |
---|
| 52 | def test_get_scan(self): |
---|
| 53 | st = self.st.get_scan([1]) |
---|
[1840] | 54 | assert_equal(st.nscan(), 1) |
---|
[1544] | 55 | st = self.st.get_scan("Orion_SiO_R") |
---|
[1840] | 56 | assert_equal(st.get_sourcename()[-1], "Orion_SiO_R") |
---|
| 57 | assert_equal(st.nscan(), 1) |
---|
[1544] | 58 | |
---|
| 59 | def test_get_spectrum(self): |
---|
| 60 | spec = self.st.get_spectrum(0) |
---|
[1840] | 61 | assert_almost_equal(max(spec), 215.279830933) |
---|
[1544] | 62 | |
---|
| 63 | def test_get_mask(self): |
---|
| 64 | spec = self.st.get_mask(0) |
---|
[1840] | 65 | assert_equal(len(spec), 4096) |
---|
[1592] | 66 | |
---|
[1544] | 67 | def test_set_spectrum(self): |
---|
| 68 | spec = [ 1.0 for i in range(self.st.nchan()) ] |
---|
| 69 | self.st.set_spectrum(spec, 0) |
---|
| 70 | spec1 = self.st.get_spectrum(0) |
---|
[1840] | 71 | assert_almost_equal(max(spec1), 1.0) |
---|
[1544] | 72 | |
---|
| 73 | def test_selection(self): |
---|
| 74 | sel = selector() |
---|
| 75 | sel.set_polarisations("YY") |
---|
| 76 | self.st.set_selection(sel) |
---|
[1903] | 77 | assert_equal(self.st.getpolnos(), [1]) |
---|
[1544] | 78 | sel1 = self.st.get_selection() |
---|
[1840] | 79 | assert_equal(sel1.get_pols(), [1]) |
---|
[1600] | 80 | self.st.set_selection(pols="XX") |
---|
[1903] | 81 | assert_equal(self.st.getpolnos(), [0]) |
---|
[1544] | 82 | |
---|
[1842] | 83 | |
---|
| 84 | def stats(self, key, value, mask=False): |
---|
| 85 | msk = None |
---|
| 86 | if mask: |
---|
| 87 | msk = self.st.create_mask([0,100], [3900,4096]) |
---|
| 88 | sval = self.st.stats(stat=key, mask=msk) |
---|
| 89 | assert_almost_equal(sval[0], value) |
---|
| 90 | |
---|
| 91 | def test_masked_stats(self): |
---|
| 92 | stats = { 'min': 113.767166138, |
---|
| 93 | 'max':128.21571350, 'sumsq':4180516.75, |
---|
| 94 | 'sum':35216.87890625, 'mean':118.5753479, |
---|
| 95 | 'var':15.75608253, 'stddev':3.9693932533, |
---|
| 96 | 'avdev':3.395271778, 'rms':118.6415405, |
---|
| 97 | 'median':117.5024261} |
---|
| 98 | for k,v in stats.items(): |
---|
| 99 | yield self.stats, k, v, True |
---|
| 100 | |
---|
[1544] | 101 | def test_stats(self): |
---|
| 102 | stats = { 'min': 113.767166138, |
---|
| 103 | 'max':215.279830933, 'sumsq':128759200.0, |
---|
| 104 | 'sum':720262.375, 'mean':175.845306396, |
---|
| 105 | 'var':513.95324707, 'stddev':22.6705360413, |
---|
[1592] | 106 | 'avdev':16.3966751099, 'rms':177.300170898, |
---|
| 107 | 'median':182.891845703} |
---|
[1842] | 108 | for k,v in stats.items(): |
---|
| 109 | yield self.stats, k, v |
---|
[1544] | 110 | |
---|
| 111 | def test_get_column_names(self): |
---|
[1592] | 112 | cnames = ['SCANNO', 'CYCLENO', 'BEAMNO', 'IFNO', |
---|
[1824] | 113 | 'POLNO', 'FREQ_ID', 'MOLECULE_ID', 'REFBEAMNO', 'FLAGROW', |
---|
[1592] | 114 | 'TIME', 'INTERVAL', 'SRCNAME', 'SRCTYPE', |
---|
[1544] | 115 | 'FIELDNAME', 'SPECTRA', 'FLAGTRA', 'TSYS', |
---|
[1592] | 116 | 'DIRECTION', 'AZIMUTH', 'ELEVATION', |
---|
| 117 | 'OPACITY', 'TCAL_ID', 'FIT_ID', |
---|
[1544] | 118 | 'FOCUS_ID', 'WEATHER_ID', 'SRCVELOCITY', |
---|
| 119 | 'SRCPROPERMOTION', 'SRCDIRECTION', |
---|
| 120 | 'SCANRATE'] |
---|
[1840] | 121 | assert_equal(self.st.get_column_names(), cnames) |
---|
[1544] | 122 | |
---|
[1600] | 123 | def test_get_tsys(self): |
---|
[1840] | 124 | assert_almost_equal(self.st.get_tsys()[0], 175.830429077) |
---|
[1600] | 125 | |
---|
[2791] | 126 | def test_set_tsys(self): |
---|
| 127 | s = self.st.copy() |
---|
| 128 | newval = 100.0 |
---|
| 129 | s.set_tsys(newval, 0) |
---|
| 130 | assert_almost_equal(s.get_tsys()[0], newval) |
---|
| 131 | s2 = self.st.copy() |
---|
| 132 | s2.set_tsys(newval) |
---|
| 133 | out = s2.get_tsys() |
---|
| 134 | for i in xrange(len(out)): |
---|
| 135 | assert_almost_equal(out[i], newval) |
---|
| 136 | |
---|
[1600] | 137 | def test_get_time(self): |
---|
[1840] | 138 | assert_equal(self.st.get_time(0), '2008/03/12/09:32:50') |
---|
[1600] | 139 | dt = datetime.datetime(2008,3,12,9,32,50) |
---|
[1840] | 140 | assert_equal(self.st.get_time(0, True), dt) |
---|
[1600] | 141 | |
---|
| 142 | def test_get_inttime(self): |
---|
[1840] | 143 | assert_almost_equal(self.st.get_inttime()[0], 30.720016479) |
---|
[1600] | 144 | |
---|
| 145 | def test_get_sourcename(self): |
---|
[1840] | 146 | assert_equal(self.st.get_sourcename(0), 'Orion_SiO_R') |
---|
| 147 | assert_equal(self.st.get_sourcename(), |
---|
[1824] | 148 | ['Orion_SiO_R', 'Orion_SiO_R', |
---|
| 149 | 'Orion_SiO', 'Orion_SiO']) |
---|
[1600] | 150 | |
---|
[2818] | 151 | def test_set_sourcename(self): |
---|
| 152 | s = self.st.copy() |
---|
| 153 | newname = "TEST" |
---|
| 154 | s.set_sourcename(newname) |
---|
| 155 | assert_equal(s.get_sourcename(), [newname]*4) |
---|
| 156 | |
---|
[1600] | 157 | def test_get_azimuth(self): |
---|
[1840] | 158 | assert_almost_equal(self.st.get_azimuth()[0], 5.628767013) |
---|
[1600] | 159 | |
---|
| 160 | def test_get_elevation(self): |
---|
[1840] | 161 | assert_almost_equal(self.st.get_elevation()[0], 1.01711678504) |
---|
[1600] | 162 | |
---|
| 163 | def test_get_parangle(self): |
---|
[1840] | 164 | assert_almost_equal(self.st.get_parangle()[0], 2.5921990871) |
---|
[1600] | 165 | |
---|
| 166 | def test_get_direction(self): |
---|
[2634] | 167 | assert_equal(self.st.get_direction()[0], 'J2000 05:35:14.5 -04.52.29.5') |
---|
[1600] | 168 | |
---|
| 169 | def test_get_directionval(self): |
---|
| 170 | dv = self.st.get_directionval()[0] |
---|
[1840] | 171 | assert_almost_equal(dv[0], 1.4627692699) |
---|
| 172 | assert_almost_equal(dv[1], -0.0850824415) |
---|
[1600] | 173 | |
---|
| 174 | def test_unit(self): |
---|
| 175 | self.st.set_unit('') |
---|
| 176 | self.st.set_unit('GHz') |
---|
| 177 | self.st.set_unit('km/s') |
---|
[1840] | 178 | assert_raises(RuntimeError, self.st.set_unit, 'junk') |
---|
| 179 | assert_equals(self.st.get_unit(), 'km/s') |
---|
[1600] | 180 | |
---|
[1592] | 181 | def test_average_pol(self): |
---|
| 182 | ap = self.st.average_pol() |
---|
[1840] | 183 | assert_equal(ap.npol(), 1) |
---|
[1544] | 184 | |
---|
[1600] | 185 | def test_drop_scan(self): |
---|
| 186 | s0 = self.st.drop_scan(1) |
---|
[1903] | 187 | assert_equal(s0.getscannos(), [0]) |
---|
[1600] | 188 | s1 = self.st.drop_scan([0]) |
---|
[1903] | 189 | assert_equal(s1.getscannos(), [1]) |
---|
[1592] | 190 | |
---|
[1725] | 191 | def test_flag(self): |
---|
| 192 | q = self.st.auto_quotient() |
---|
| 193 | q.set_unit('km/s') |
---|
| 194 | q0 = q.copy() |
---|
| 195 | q1 = q.copy() |
---|
| 196 | msk = q0.create_mask([-10,20]) |
---|
| 197 | q0.flag(mask=mask_not(msk)) |
---|
[1824] | 198 | q1.flag(mask=msk) |
---|
[1840] | 199 | assert_almost_equal(q0.stats(stat='max')[0], 95.62171936) |
---|
| 200 | assert_almost_equal(q1.stats(stat='max')[0], 2.66563416) |
---|
[1600] | 201 | |
---|
[2818] | 202 | |
---|
| 203 | def test_average_time_weight(self): |
---|
| 204 | weights = {'none': 236.61423, |
---|
| 205 | 'var' : 232.98752, |
---|
| 206 | 'tsys' : 236.37482, |
---|
| 207 | 'tint' : 236.61423, |
---|
| 208 | 'tintsys' : 236.37485, |
---|
| 209 | 'median' : 236.61423, |
---|
| 210 | } |
---|
| 211 | |
---|
| 212 | for k,v in weights.items(): |
---|
| 213 | yield self.av_weight, k, v |
---|
| 214 | |
---|
| 215 | def av_weight(self, weight, result): |
---|
| 216 | out = self.st.average_time(weight=weight) |
---|
| 217 | assert_almost_equals(max(out.get_spectrum(0)), result, 5) |
---|
| 218 | |
---|
[1840] | 219 | @with_setup(tempdir_setup, tempdir_teardown) |
---|
| 220 | def test_save(self): |
---|
| 221 | fname = os.path.join("test_temp", 'scantable_test.%s') |
---|
| 222 | formats = [(fname % 'sdfits', 'SDFITS', True), |
---|
| 223 | (fname % 'ms', 'MS2', True), |
---|
| 224 | (fname % 'class.fits', 'CLASS', False), |
---|
| 225 | (fname % 'fits', 'FITS', False), |
---|
| 226 | (fname % 'txt', 'ASCII', False), |
---|
| 227 | ] |
---|
[2818] | 228 | for fmt in formats: |
---|
| 229 | yield self.save, fmt |
---|
[1840] | 230 | |
---|
| 231 | def save(self, args): |
---|
| 232 | fname = args[0] |
---|
| 233 | self.st.save(fname, args[1], True) |
---|
[1844] | 234 | # do some verification args[2] == True |
---|
[1840] | 235 | if args[-1]: |
---|
| 236 | s = scantable(fname) |
---|
| 237 | ds = self.st - s |
---|
| 238 | assert_equals(self.st.getpolnos(), s.getpolnos()) |
---|
| 239 | assert_equals(self.st.getscannos(), s.getscannos()) |
---|
| 240 | assert_equals(self.st.getifnos(), s.getifnos()) |
---|
| 241 | assert_equals(self.st.getbeamnos(), s.getbeamnos()) |
---|
[1844] | 242 | # see if the residual spectra are ~ 0.0 |
---|
[1840] | 243 | for spec in ds: |
---|
| 244 | assert_almost_equals(sum(spec)/len(spec), 0.0, 5) |
---|
[1925] | 245 | |
---|
| 246 | def test_auto_poly_baseline(self): |
---|
| 247 | q = self.st.auto_quotient() |
---|
| 248 | b = q.auto_poly_baseline(insitu=False) |
---|
| 249 | res_rms = (q-b).stats('rms') |
---|
| 250 | assert_almost_equals(res_rms[0], 0.38370, 5) |
---|
| 251 | assert_almost_equals(res_rms[1], 0.38780, 5) |
---|
| 252 | |
---|
| 253 | |
---|
| 254 | def test_poly_baseline(self): |
---|
| 255 | q = self.st.auto_quotient() |
---|
| 256 | msk = q.create_mask([0.0, 1471.0], [1745.0, 4095.0]) |
---|
| 257 | b = q.poly_baseline(order=0, mask=msk,insitu=False) |
---|
| 258 | res_rms = (q-b).stats('rms') |
---|
| 259 | assert_almost_equals(res_rms[0], 0.38346, 5) |
---|
[2787] | 260 | assert_almost_equals(res_rms[1], 0.38780, 5) |
---|
[2672] | 261 | |
---|
| 262 | |
---|
| 263 | def test_reshape(self): |
---|
| 264 | cp = self.st.copy() |
---|
| 265 | n = cp.nchan() |
---|
| 266 | rs = cp.reshape(10,-10,False) |
---|
| 267 | assert_equals(n-20, rs.nchan()) |
---|
| 268 | assert_equals(cp.nchan(), n) |
---|
| 269 | rs = cp.reshape(10,n-11,False) |
---|
| 270 | assert_equals(n-20, rs.nchan()) |
---|
| 271 | cp.reshape(10,-10,True) |
---|
| 272 | assert_equals(n-20, cp.nchan()) |
---|