[847] | 1 | //
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| 2 | // C++ Interface: Scantable
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| 3 | //
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| 4 | // Description:
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| 5 | //
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| 6 | //
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| 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006
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| 8 | //
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| 9 | // Copyright: See COPYING file that comes with this distribution
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| 10 | //
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| 11 | //
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| 12 | #ifndef ASAPSCANTABLEWRAPPER_H
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| 13 | #define ASAPSCANTABLEWRAPPER_H
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[2] | 14 |
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[2587] | 15 | #include <iostream>
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| 16 | #include <string>
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[2] | 17 | #include <vector>
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[2587] | 18 |
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[380] | 19 | #include <casa/Arrays/Vector.h>
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[2] | 20 |
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[465] | 21 | #include "MathUtils.h"
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[2587] | 22 | #include "Scantable.h"
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| 23 | #include "STCoordinate.h"
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[901] | 24 | #include "STFit.h"
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[1931] | 25 | #include "STFitEntry.h"
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[3046] | 26 | #include "GILHandler.h"
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[2] | 27 |
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[83] | 28 | namespace asap {
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[847] | 29 | /**
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| 30 | * This class contains and wraps a CountedPtr<Scantable>, as the CountedPtr
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| 31 | * class does not provide the dor operator which is need for references
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| 32 | * in boost::python
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| 33 | * see Scantable for interfce description
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| 34 | *
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| 35 | * @brief The main ASAP data container wrapper
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| 36 | * @author Malte Marquarding
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| 37 | * @date 2006-02-23
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| 38 | * @version 2.0a
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| 39 | */
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| 40 | class ScantableWrapper {
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[2] | 41 |
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| 42 | public:
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[1385] | 43 | explicit ScantableWrapper( const std::string& name,
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[1077] | 44 | int type=0)
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[864] | 45 | {
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[3052] | 46 | GILHandler scopedRelease;
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[864] | 47 | casa::Table::TableType tp = casa::Table::Memory;
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[1077] | 48 | if ( type == 1 ) tp = casa::Table::Plain;
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[864] | 49 | table_ = new Scantable(name, tp);
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| 50 | }
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[90] | 51 |
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[1350] | 52 | explicit ScantableWrapper(int type=0)
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[864] | 53 | {
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[3052] | 54 | GILHandler scopedRelease;
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[864] | 55 | casa::Table::TableType tp = casa::Table::Memory;
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[1077] | 56 | if ( type == 1) tp = casa::Table::Plain;
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[864] | 57 | table_= new Scantable(tp);
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| 58 | }
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[90] | 59 |
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[1350] | 60 | explicit ScantableWrapper(casa::CountedPtr<Scantable> cp) : table_(cp) {;}
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[90] | 61 |
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[847] | 62 | ScantableWrapper(const ScantableWrapper& mt) :
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| 63 | table_(mt.getCP()) {;}
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[90] | 64 |
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[2587] | 65 | ~ScantableWrapper()
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| 66 | {
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[3052] | 67 | GILHandler scopedRelease;
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| 68 | table_.reset();
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[2587] | 69 | }
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| 70 |
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[868] | 71 | void assign(const ScantableWrapper& mt)
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| 72 | { table_= mt.getCP(); }
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| 73 |
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[847] | 74 | ScantableWrapper copy() {
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[3052] | 75 | GILHandler scopedRelease;
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[847] | 76 | return ScantableWrapper(new Scantable(*(this->getCP()), false));
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[80] | 77 | }
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[868] | 78 |
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[896] | 79 | std::vector<float> getSpectrum( int whichrow=0,
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[905] | 80 | const std::string& poltype="" ) const {
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[896] | 81 | return table_->getSpectrum(whichrow, poltype);
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[2] | 82 | }
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[527] | 83 | // std::string getPolarizationLabel(bool linear, bool stokes, bool linPol, int polIdx) const {
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| 84 | // Boost fails with 4 arguments.
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[902] | 85 | std::string getPolarizationLabel(int index, const std::string& ptype) const {
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| 86 | return table_->getPolarizationLabel(index, ptype);
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[494] | 87 | }
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[527] | 88 |
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[896] | 89 | std::vector<double> getAbcissa(int whichrow=0) const
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| 90 | { return table_->getAbcissa(whichrow); }
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[41] | 91 |
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[896] | 92 | std::string getAbcissaLabel(int whichrow=0) const
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| 93 | { return table_->getAbcissaLabel(whichrow); }
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[157] | 94 |
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[896] | 95 | float getTsys(int whichrow=0) const
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| 96 | { return table_->getTsys(whichrow); }
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[2] | 97 |
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[2161] | 98 | std::vector<float> getTsysSpectrum(int whichrow=0) const
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| 99 | { return table_->getTsysSpectrum(whichrow); }
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| 100 |
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[2791] | 101 | void setTsys(const std::vector<float>& newvals, int whichrow=-1)
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| 102 | { return table_->setTsys(newvals, whichrow); }
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| 103 |
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[1947] | 104 | //std::string getTime(int whichrow=0) const
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| 105 | // { return table_->getTime(whichrow); }
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| 106 | std::string getTime(int whichrow=0, int prec = 0) const
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| 107 | { return table_->getTime(whichrow, true, casa::uInt(prec)); }
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[207] | 108 |
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[1350] | 109 | double getIntTime(int whichrow=0) const
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| 110 | { return table_->getIntTime(whichrow); }
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| 111 |
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[1068] | 112 | std::string getDirectionString(int whichrow=0) const
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| 113 | { return table_->getDirectionString(whichrow); }
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| 114 |
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[864] | 115 | std::string getFluxUnit() const { return table_->getFluxUnit(); }
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| 116 |
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| 117 | void setFluxUnit(const std::string& unit) { table_->setFluxUnit(unit); }
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| 118 |
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[238] | 119 | void setInstrument(const std::string& name) {table_->setInstrument(name);}
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[1189] | 120 | void setFeedType(const std::string& ftype) {table_->setFeedType(ftype);}
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[238] | 121 |
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[896] | 122 | std::vector<bool> getMask(int whichrow=0) const
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| 123 | { return table_->getMask(whichrow); }
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[2] | 124 |
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[1430] | 125 | /**
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[1000] | 126 | void flag(const std::vector<bool>& msk=std::vector<bool>())
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| 127 | { table_->flag(msk); }
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[1430] | 128 | **/
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[1994] | 129 | /**
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[1430] | 130 | void flag(const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false)
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| 131 | { table_->flag(msk, unflag); }
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[1994] | 132 | **/
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| 133 | void flag(int whichrow=-1, const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false)
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| 134 | { table_->flag(whichrow, msk, unflag); }
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[2] | 135 |
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[1819] | 136 | void flagRow(const std::vector<casa::uInt>& rows=std::vector<casa::uInt>(), bool unflag=false)
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| 137 | { table_->flagRow(rows, unflag); }
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| 138 |
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| 139 | bool getFlagRow(int whichrow=0) const
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| 140 | { return table_->getFlagRow(whichrow); }
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| 141 |
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| 142 | void clip(const casa::Float uthres, const casa::Float dthres, bool clipoutside=true, bool unflag=false)
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| 143 | { table_->clip(uthres, dthres, clipoutside, unflag); }
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| 144 |
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| 145 | std::vector<bool> getClipMask(int whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag) const
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| 146 | { return table_->getClipMask(whichrow, uthres, dthres, clipoutside, unflag); }
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| 147 |
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[896] | 148 | std::string getSourceName(int whichrow=0) const
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| 149 | { return table_->getSourceName(whichrow); }
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[794] | 150 |
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[896] | 151 | float getElevation(int whichrow=0) const
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| 152 | { return table_->getElevation(whichrow); }
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[90] | 153 |
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[896] | 154 | float getAzimuth(int whichrow=0) const
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| 155 | { return table_->getAzimuth(whichrow); }
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[2] | 156 |
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[896] | 157 | float getParAngle(int whichrow=0) const
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| 158 | { return table_->getParAngle(whichrow); }
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[2] | 159 |
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[864] | 160 |
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[884] | 161 | void setSpectrum(std::vector<float> spectrum, int whichrow=0)
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| 162 | { table_->setSpectrum(spectrum, whichrow); }
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[868] | 163 |
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[1111] | 164 | std::vector<uint> getIFNos() { return table_->getIFNos(); }
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[864] | 165 | int getIF(int whichrow) const {return table_->getIF(whichrow);}
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[1111] | 166 | std::vector<uint> getBeamNos() { return table_->getBeamNos(); }
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[864] | 167 | int getBeam(int whichrow) const {return table_->getBeam(whichrow);}
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[1111] | 168 | std::vector<uint> getPolNos() { return table_->getPolNos(); }
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[864] | 169 | int getPol(int whichrow) const {return table_->getPol(whichrow);}
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[2667] | 170 | std::vector<uint> getCycleNos() { return table_->getCycleNos(); }
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[868] | 171 | int getCycle(int whichrow) const {return table_->getCycle(whichrow);}
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[1111] | 172 | std::vector<uint> getScanNos() { return table_->getScanNos(); }
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[868] | 173 | int getScan(int whichrow) const {return table_->getScan(whichrow);}
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[1819] | 174 | std::vector<uint> getMolNos() { return table_->getMolNos();}
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[864] | 175 |
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| 176 | STSelector getSelection() const { return table_->getSelection(); }
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[868] | 177 | void setSelection(const STSelector& sts)
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| 178 | { return table_->setSelection(sts);}
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[864] | 179 |
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[896] | 180 | std::string getPolType() const { return table_->getPolType(); }
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| 181 |
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[864] | 182 | int nif(int scanno=-1) const {return table_->nif(scanno);}
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| 183 | int nbeam(int scanno=-1) const {return table_->nbeam(scanno);}
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| 184 | int npol(int scanno=-1) const {return table_->npol(scanno);}
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| 185 | int nchan(int ifno=-1) const {return table_->nchan(ifno);}
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| 186 | int nscan() const {return table_->nscan();}
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| 187 | int nrow() const {return table_->nrow();}
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[902] | 188 | int ncycle(int scanno) const {return table_->ncycle(scanno);}
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[2] | 189 |
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[864] | 190 | void makePersistent(const std::string& fname)
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[3052] | 191 | {
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| 192 | GILHandler scopedRelease;
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| 193 | table_->makePersistent(fname);
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| 194 | }
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[90] | 195 |
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[1068] | 196 | void setSourceType(int stype)
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| 197 | { table_->setSourceType(stype); }
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| 198 |
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[2818] | 199 | void setSourceName(const std::string& name)
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| 200 | { table_->setSourceName(name); }
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| 201 |
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[1360] | 202 | void shift(int npix)
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| 203 | { table_->shift(npix); }
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| 204 |
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[1819] | 205 | /**
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| 206 | commented out by TT
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[1170] | 207 | void setRestFrequencies(double rf, const std::string& name,
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| 208 | const std::string& unit)
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| 209 | { table_->setRestFrequencies(rf, name, unit); }
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[1819] | 210 | **/
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| 211 | void setRestFrequencies(vector<double> rf, const vector<std::string>& name,
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| 212 | const std::string& unit)
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| 213 | { table_->setRestFrequencies(rf, name, unit); }
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| 214 |
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[925] | 215 | /*
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[868] | 216 | void setRestFrequencies(const std::string& name) {
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| 217 | table_->setRestFrequencies(name);
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[847] | 218 | }
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[925] | 219 | */
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[745] | 220 |
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[1819] | 221 | /*
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[864] | 222 | std::vector<double> getRestFrequencies() const
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| 223 | { return table_->getRestFrequencies(); }
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[1819] | 224 | */
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| 225 | std::vector<double> getRestFrequency(int id) const
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| 226 | { return table_->getRestFrequency(id); }
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[251] | 227 |
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[105] | 228 | void setCoordInfo(std::vector<string> theinfo) {
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| 229 | table_->setCoordInfo(theinfo);
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| 230 | }
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| 231 | std::vector<string> getCoordInfo() const {
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| 232 | return table_->getCoordInfo();
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| 233 | }
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[90] | 234 |
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[987] | 235 | void setDirection(const std::string& refstr="")
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| 236 | { table_->setDirectionRefString(refstr); }
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| 237 |
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[847] | 238 | casa::CountedPtr<Scantable> getCP() const {return table_;}
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| 239 | Scantable* getPtr() {return &(*table_);}
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[380] | 240 |
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[2286] | 241 | // std::string summary() const {
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| 242 | // return table_->summary();
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| 243 | // }
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| 244 | void summary(const std::string& filename="") {
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[2290] | 245 | //std::string summary(const std::string& filename="") const {
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| 246 | table_->summary(filename);
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[380] | 247 | }
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[745] | 248 |
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[2178] | 249 | std::string listHeader() const {
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[2163] | 250 | return table_->headerSummary();
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[2111] | 251 | }
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| 252 |
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[2820] | 253 | std::vector<std::string> getHistory(int nrow=-1, int start=0) const
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| 254 | { return table_->getHistory(nrow, start); }
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[207] | 255 |
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[2820] | 256 | uint historyLength() {
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| 257 | return table_->historyLength();
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| 258 | }
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| 259 |
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| 260 | void dropHistory() { table_->dropHistory(); }
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| 261 |
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[864] | 262 | void addHistory(const std::string& hist)
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| 263 | { table_->addHistory(hist); }
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[745] | 264 |
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[972] | 265 | void addFit(const STFitEntry& fit, int row)
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| 266 | { table_->addFit(fit, row); }
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| 267 |
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| 268 | STFitEntry getFit(int whichrow) const
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| 269 | { return table_->getFit(whichrow); }
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| 270 |
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[2012] | 271 | void calculateAZEL() { table_->calculateAZEL(); }
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[465] | 272 |
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[1003] | 273 | std::vector<std::string> columnNames() const
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| 274 | { return table_->columnNames(); }
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| 275 |
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[1391] | 276 | std::string getAntennaName() const
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| 277 | { return table_->getAntennaName(); }
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| 278 |
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| 279 | int checkScanInfo(const vector<int>& scanlist) const
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| 280 | { return table_->checkScanInfo(scanlist); }
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[1819] | 281 |
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[1730] | 282 | std::vector<double> getDirectionVector(int whichrow) const
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[1391] | 283 | { return table_->getDirectionVector(whichrow); }
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| 284 |
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[1586] | 285 | void parallactify(bool flag)
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| 286 | { table_->parallactify(flag); }
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| 287 |
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[1598] | 288 | STCoordinate getCoordinate(int row) {
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| 289 | return STCoordinate(table_->getSpectralCoordinate(row));
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| 290 | }
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| 291 |
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[1730] | 292 | std::vector<float> getWeather(int whichrow) const
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| 293 | { return table_->getWeather(whichrow); }
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| 294 |
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[1819] | 295 | void reshapeSpectrum( int nmin, int nmax )
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| 296 | { table_->reshapeSpectrum( nmin, nmax ); }
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| 297 |
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[2435] | 298 | void regridSpecChannel( double dnu, int nchan )
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| 299 | { table_->regridSpecChannel( dnu, nchan ); }
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| 300 |
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[2811] | 301 | std::vector<std::string> applyBaselineTable(const std::string& bltable, const bool returnfitresult, const std::string& outbltable, const bool outbltableexists, const bool overwrite)
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[3046] | 302 | {
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| 303 | GILHandler scopedRelease;
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| 304 | return table_->applyBaselineTable(bltable, returnfitresult, outbltable, outbltableexists, overwrite);
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| 305 | }
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[2811] | 306 | std::vector<std::string> subBaseline(const std::vector<std::string>& blinfo, const bool returnfitresult, const std::string& outbltable, const bool outbltableexists, const bool overwrite)
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[3046] | 307 | {
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| 308 | GILHandler scopedRelease;
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| 309 | return table_->subBaseline(blinfo, returnfitresult, outbltable, outbltableexists, overwrite);
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| 310 | }
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[2767] | 311 | void polyBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 312 | { table_->polyBaseline(mask, order, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); }
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[1907] | 313 |
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[2767] | 314 | void autoPolyBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 315 | { table_->autoPolyBaseline(mask, order, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); }
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[1907] | 316 |
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[2767] | 317 | void chebyshevBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 318 | { table_->chebyshevBaseline(mask, order, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); }
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[2645] | 319 |
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[2767] | 320 | void autoChebyshevBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 321 | { table_->autoChebyshevBaseline(mask, order, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); }
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[2645] | 322 |
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[2767] | 323 | void cubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 324 | { table_->cubicSplineBaseline(mask, npiece, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); }
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[2012] | 325 |
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[2767] | 326 | void autoCubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 327 | { table_->autoCubicSplineBaseline(mask, npiece, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); }
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[2012] | 328 |
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[2767] | 329 | void sinusoidBaseline(const std::vector<bool>& mask, const std::string& fftinfo, const std::vector<int>& addwn, const std::vector<int>& rejwn, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 330 | { table_->sinusoidBaseline(mask, fftinfo, addwn, rejwn, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); }
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[2047] | 331 |
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[2767] | 332 | void autoSinusoidBaseline(const std::vector<bool>& mask, const std::string& fftinfo, const std::vector<int>& addwn, const std::vector<int>& rejwn, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="")
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| 333 | { table_->autoSinusoidBaseline(mask, fftinfo, addwn, rejwn, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); }
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[2047] | 334 |
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[2012] | 335 | float getRms(const std::vector<bool>& mask, int whichrow)
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| 336 | { return table_->getRms(mask, whichrow); }
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| 337 |
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[2641] | 338 | std::string formatBaselineParams(const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false, bool csvformat=false)
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| 339 | { return table_->formatBaselineParams(params, fixed, rms, -1, masklist, whichrow, verbose, csvformat); }
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[2012] | 340 |
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[2641] | 341 | std::string formatPiecewiseBaselineParams(const std::vector<int>& ranges, const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false, bool csvformat=false)
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| 342 | { return table_->formatPiecewiseBaselineParams(ranges, params, fixed, rms, -1, masklist, whichrow, verbose, csvformat); }
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[2012] | 343 |
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[2831] | 344 | bool isAllChannelsFlagged(int whichrow=0) const
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| 345 | { return table_->isAllChannelsFlagged(casa::uInt(whichrow)); }
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[1907] | 346 |
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[2186] | 347 | std::vector<float> execFFT(int whichrow, const std::vector<bool>& mask, bool getRealImag=false, bool getAmplitudeOnly=false)
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| 348 | { return table_->execFFT(whichrow, mask, getRealImag, getAmplitudeOnly); }
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[1907] | 349 |
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[2591] | 350 | std::vector<uint> getMoleculeIdColumnData() const
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| 351 | { return table_->getMoleculeIdColumnData(); }
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| 352 | void setMoleculeIdColumnData(const std::vector<uint>& molids)
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| 353 | { table_->setMoleculeIdColumnData(molids); }
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[2888] | 354 |
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| 355 | std::vector<uint> getRootTableRowNumbers() const
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| 356 | { return table_->getRootTableRowNumbers(); }
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| 357 |
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[2713] | 358 | double calculateModelSelectionCriteria(const std::string& valname, const std::string& blfunc, int order, const std::vector<bool>& inMask, int whichrow, bool useLineFinder, const std::vector<int>& edge, float threshold, int chanAvgLimit)
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| 359 | { return table_->calculateModelSelectionCriteria(valname, blfunc, order, inMask, whichrow, useLineFinder, edge, threshold, chanAvgLimit); }
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[2012] | 360 |
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[2789] | 361 | void dropXPol() { table_->dropXPol(); }
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| 362 |
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[2] | 363 | private:
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[847] | 364 | casa::CountedPtr<Scantable> table_;
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[2] | 365 | };
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| 366 |
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| 367 | } // namespace
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| 368 | #endif
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