[847] | 1 | // |
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| 2 | // C++ Interface: Scantable |
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| 3 | // |
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| 4 | // Description: |
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| 5 | // |
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| 6 | // |
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| 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006 |
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| 8 | // |
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| 9 | // Copyright: See COPYING file that comes with this distribution |
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| 10 | // |
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| 11 | // |
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| 12 | #ifndef ASAPSCANTABLEWRAPPER_H |
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| 13 | #define ASAPSCANTABLEWRAPPER_H |
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[2] | 14 | |
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[2587] | 15 | #include <iostream> |
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| 16 | #include <string> |
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[2] | 17 | #include <vector> |
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[2587] | 18 | |
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[380] | 19 | #include <casa/Arrays/Vector.h> |
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[2] | 20 | |
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[465] | 21 | #include "MathUtils.h" |
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[2587] | 22 | #include "Scantable.h" |
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| 23 | #include "STCoordinate.h" |
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[901] | 24 | #include "STFit.h" |
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[1931] | 25 | #include "STFitEntry.h" |
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[3046] | 26 | #include "GILHandler.h" |
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[2] | 27 | |
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[83] | 28 | namespace asap { |
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[847] | 29 | /** |
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| 30 | * This class contains and wraps a CountedPtr<Scantable>, as the CountedPtr |
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| 31 | * class does not provide the dor operator which is need for references |
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| 32 | * in boost::python |
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| 33 | * see Scantable for interfce description |
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| 34 | * |
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| 35 | * @brief The main ASAP data container wrapper |
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| 36 | * @author Malte Marquarding |
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| 37 | * @date 2006-02-23 |
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| 38 | * @version 2.0a |
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| 39 | */ |
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| 40 | class ScantableWrapper { |
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[2] | 41 | |
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| 42 | public: |
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[1385] | 43 | explicit ScantableWrapper( const std::string& name, |
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[1077] | 44 | int type=0) |
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[864] | 45 | { |
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| 46 | casa::Table::TableType tp = casa::Table::Memory; |
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[1077] | 47 | if ( type == 1 ) tp = casa::Table::Plain; |
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[864] | 48 | table_ = new Scantable(name, tp); |
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| 49 | } |
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[90] | 50 | |
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[1350] | 51 | explicit ScantableWrapper(int type=0) |
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[864] | 52 | { |
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| 53 | casa::Table::TableType tp = casa::Table::Memory; |
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[1077] | 54 | if ( type == 1) tp = casa::Table::Plain; |
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[864] | 55 | table_= new Scantable(tp); |
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| 56 | } |
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[90] | 57 | |
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[1350] | 58 | explicit ScantableWrapper(casa::CountedPtr<Scantable> cp) : table_(cp) {;} |
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[90] | 59 | |
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[847] | 60 | ScantableWrapper(const ScantableWrapper& mt) : |
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| 61 | table_(mt.getCP()) {;} |
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[90] | 62 | |
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[2587] | 63 | ~ScantableWrapper() |
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| 64 | { |
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| 65 | } |
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| 66 | |
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[868] | 67 | void assign(const ScantableWrapper& mt) |
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| 68 | { table_= mt.getCP(); } |
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| 69 | |
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[847] | 70 | ScantableWrapper copy() { |
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| 71 | return ScantableWrapper(new Scantable(*(this->getCP()), false)); |
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[80] | 72 | } |
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[868] | 73 | |
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[896] | 74 | std::vector<float> getSpectrum( int whichrow=0, |
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[905] | 75 | const std::string& poltype="" ) const { |
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[896] | 76 | return table_->getSpectrum(whichrow, poltype); |
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[2] | 77 | } |
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[527] | 78 | // std::string getPolarizationLabel(bool linear, bool stokes, bool linPol, int polIdx) const { |
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| 79 | // Boost fails with 4 arguments. |
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[902] | 80 | std::string getPolarizationLabel(int index, const std::string& ptype) const { |
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| 81 | return table_->getPolarizationLabel(index, ptype); |
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[494] | 82 | } |
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[527] | 83 | |
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[896] | 84 | std::vector<double> getAbcissa(int whichrow=0) const |
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| 85 | { return table_->getAbcissa(whichrow); } |
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[41] | 86 | |
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[896] | 87 | std::string getAbcissaLabel(int whichrow=0) const |
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| 88 | { return table_->getAbcissaLabel(whichrow); } |
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[157] | 89 | |
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[896] | 90 | float getTsys(int whichrow=0) const |
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| 91 | { return table_->getTsys(whichrow); } |
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[2] | 92 | |
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[2161] | 93 | std::vector<float> getTsysSpectrum(int whichrow=0) const |
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| 94 | { return table_->getTsysSpectrum(whichrow); } |
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| 95 | |
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[2791] | 96 | void setTsys(const std::vector<float>& newvals, int whichrow=-1) |
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| 97 | { return table_->setTsys(newvals, whichrow); } |
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| 98 | |
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[1947] | 99 | //std::string getTime(int whichrow=0) const |
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| 100 | // { return table_->getTime(whichrow); } |
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| 101 | std::string getTime(int whichrow=0, int prec = 0) const |
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| 102 | { return table_->getTime(whichrow, true, casa::uInt(prec)); } |
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[207] | 103 | |
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[1350] | 104 | double getIntTime(int whichrow=0) const |
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| 105 | { return table_->getIntTime(whichrow); } |
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| 106 | |
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[1068] | 107 | std::string getDirectionString(int whichrow=0) const |
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| 108 | { return table_->getDirectionString(whichrow); } |
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| 109 | |
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[864] | 110 | std::string getFluxUnit() const { return table_->getFluxUnit(); } |
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| 111 | |
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| 112 | void setFluxUnit(const std::string& unit) { table_->setFluxUnit(unit); } |
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| 113 | |
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[238] | 114 | void setInstrument(const std::string& name) {table_->setInstrument(name);} |
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[1189] | 115 | void setFeedType(const std::string& ftype) {table_->setFeedType(ftype);} |
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[238] | 116 | |
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[896] | 117 | std::vector<bool> getMask(int whichrow=0) const |
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| 118 | { return table_->getMask(whichrow); } |
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[2] | 119 | |
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[1430] | 120 | /** |
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[1000] | 121 | void flag(const std::vector<bool>& msk=std::vector<bool>()) |
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| 122 | { table_->flag(msk); } |
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[1430] | 123 | **/ |
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[1994] | 124 | /** |
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[1430] | 125 | void flag(const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false) |
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| 126 | { table_->flag(msk, unflag); } |
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[1994] | 127 | **/ |
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| 128 | void flag(int whichrow=-1, const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false) |
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| 129 | { table_->flag(whichrow, msk, unflag); } |
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[2] | 130 | |
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[1819] | 131 | void flagRow(const std::vector<casa::uInt>& rows=std::vector<casa::uInt>(), bool unflag=false) |
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| 132 | { table_->flagRow(rows, unflag); } |
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| 133 | |
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| 134 | bool getFlagRow(int whichrow=0) const |
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| 135 | { return table_->getFlagRow(whichrow); } |
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| 136 | |
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| 137 | void clip(const casa::Float uthres, const casa::Float dthres, bool clipoutside=true, bool unflag=false) |
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| 138 | { table_->clip(uthres, dthres, clipoutside, unflag); } |
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| 139 | |
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| 140 | std::vector<bool> getClipMask(int whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag) const |
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| 141 | { return table_->getClipMask(whichrow, uthres, dthres, clipoutside, unflag); } |
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| 142 | |
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[896] | 143 | std::string getSourceName(int whichrow=0) const |
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| 144 | { return table_->getSourceName(whichrow); } |
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[794] | 145 | |
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[896] | 146 | float getElevation(int whichrow=0) const |
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| 147 | { return table_->getElevation(whichrow); } |
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[90] | 148 | |
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[896] | 149 | float getAzimuth(int whichrow=0) const |
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| 150 | { return table_->getAzimuth(whichrow); } |
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[2] | 151 | |
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[896] | 152 | float getParAngle(int whichrow=0) const |
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| 153 | { return table_->getParAngle(whichrow); } |
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[2] | 154 | |
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[864] | 155 | |
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[884] | 156 | void setSpectrum(std::vector<float> spectrum, int whichrow=0) |
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| 157 | { table_->setSpectrum(spectrum, whichrow); } |
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[868] | 158 | |
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[1111] | 159 | std::vector<uint> getIFNos() { return table_->getIFNos(); } |
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[864] | 160 | int getIF(int whichrow) const {return table_->getIF(whichrow);} |
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[1111] | 161 | std::vector<uint> getBeamNos() { return table_->getBeamNos(); } |
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[864] | 162 | int getBeam(int whichrow) const {return table_->getBeam(whichrow);} |
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[1111] | 163 | std::vector<uint> getPolNos() { return table_->getPolNos(); } |
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[864] | 164 | int getPol(int whichrow) const {return table_->getPol(whichrow);} |
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[2667] | 165 | std::vector<uint> getCycleNos() { return table_->getCycleNos(); } |
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[868] | 166 | int getCycle(int whichrow) const {return table_->getCycle(whichrow);} |
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[1111] | 167 | std::vector<uint> getScanNos() { return table_->getScanNos(); } |
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[868] | 168 | int getScan(int whichrow) const {return table_->getScan(whichrow);} |
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[1819] | 169 | std::vector<uint> getMolNos() { return table_->getMolNos();} |
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[864] | 170 | |
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| 171 | STSelector getSelection() const { return table_->getSelection(); } |
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[868] | 172 | void setSelection(const STSelector& sts) |
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| 173 | { return table_->setSelection(sts);} |
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[864] | 174 | |
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[896] | 175 | std::string getPolType() const { return table_->getPolType(); } |
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| 176 | |
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[864] | 177 | int nif(int scanno=-1) const {return table_->nif(scanno);} |
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| 178 | int nbeam(int scanno=-1) const {return table_->nbeam(scanno);} |
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| 179 | int npol(int scanno=-1) const {return table_->npol(scanno);} |
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| 180 | int nchan(int ifno=-1) const {return table_->nchan(ifno);} |
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| 181 | int nscan() const {return table_->nscan();} |
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| 182 | int nrow() const {return table_->nrow();} |
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[902] | 183 | int ncycle(int scanno) const {return table_->ncycle(scanno);} |
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[2] | 184 | |
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[864] | 185 | void makePersistent(const std::string& fname) |
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| 186 | { table_->makePersistent(fname); } |
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[90] | 187 | |
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[1068] | 188 | void setSourceType(int stype) |
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| 189 | { table_->setSourceType(stype); } |
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| 190 | |
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[2818] | 191 | void setSourceName(const std::string& name) |
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| 192 | { table_->setSourceName(name); } |
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| 193 | |
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[1360] | 194 | void shift(int npix) |
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| 195 | { table_->shift(npix); } |
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| 196 | |
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[1819] | 197 | /** |
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| 198 | commented out by TT |
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[1170] | 199 | void setRestFrequencies(double rf, const std::string& name, |
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| 200 | const std::string& unit) |
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| 201 | { table_->setRestFrequencies(rf, name, unit); } |
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[1819] | 202 | **/ |
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| 203 | void setRestFrequencies(vector<double> rf, const vector<std::string>& name, |
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| 204 | const std::string& unit) |
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| 205 | { table_->setRestFrequencies(rf, name, unit); } |
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| 206 | |
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[925] | 207 | /* |
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[868] | 208 | void setRestFrequencies(const std::string& name) { |
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| 209 | table_->setRestFrequencies(name); |
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[847] | 210 | } |
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[925] | 211 | */ |
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[745] | 212 | |
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[1819] | 213 | /* |
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[864] | 214 | std::vector<double> getRestFrequencies() const |
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| 215 | { return table_->getRestFrequencies(); } |
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[1819] | 216 | */ |
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| 217 | std::vector<double> getRestFrequency(int id) const |
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| 218 | { return table_->getRestFrequency(id); } |
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[251] | 219 | |
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[105] | 220 | void setCoordInfo(std::vector<string> theinfo) { |
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| 221 | table_->setCoordInfo(theinfo); |
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| 222 | } |
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| 223 | std::vector<string> getCoordInfo() const { |
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| 224 | return table_->getCoordInfo(); |
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| 225 | } |
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[90] | 226 | |
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[987] | 227 | void setDirection(const std::string& refstr="") |
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| 228 | { table_->setDirectionRefString(refstr); } |
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| 229 | |
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[847] | 230 | casa::CountedPtr<Scantable> getCP() const {return table_;} |
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| 231 | Scantable* getPtr() {return &(*table_);} |
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[380] | 232 | |
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[2286] | 233 | // std::string summary() const { |
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| 234 | // return table_->summary(); |
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| 235 | // } |
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| 236 | void summary(const std::string& filename="") { |
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[2290] | 237 | //std::string summary(const std::string& filename="") const { |
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| 238 | table_->summary(filename); |
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[380] | 239 | } |
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[745] | 240 | |
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[2178] | 241 | std::string listHeader() const { |
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[2163] | 242 | return table_->headerSummary(); |
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[2111] | 243 | } |
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| 244 | |
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[2820] | 245 | std::vector<std::string> getHistory(int nrow=-1, int start=0) const |
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| 246 | { return table_->getHistory(nrow, start); } |
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[207] | 247 | |
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[2820] | 248 | uint historyLength() { |
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| 249 | return table_->historyLength(); |
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| 250 | } |
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| 251 | |
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| 252 | void dropHistory() { table_->dropHistory(); } |
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| 253 | |
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[864] | 254 | void addHistory(const std::string& hist) |
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| 255 | { table_->addHistory(hist); } |
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[745] | 256 | |
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[972] | 257 | void addFit(const STFitEntry& fit, int row) |
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| 258 | { table_->addFit(fit, row); } |
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| 259 | |
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| 260 | STFitEntry getFit(int whichrow) const |
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| 261 | { return table_->getFit(whichrow); } |
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| 262 | |
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[2012] | 263 | void calculateAZEL() { table_->calculateAZEL(); } |
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[465] | 264 | |
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[1003] | 265 | std::vector<std::string> columnNames() const |
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| 266 | { return table_->columnNames(); } |
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| 267 | |
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[1391] | 268 | std::string getAntennaName() const |
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| 269 | { return table_->getAntennaName(); } |
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| 270 | |
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| 271 | int checkScanInfo(const vector<int>& scanlist) const |
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| 272 | { return table_->checkScanInfo(scanlist); } |
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[1819] | 273 | |
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[1730] | 274 | std::vector<double> getDirectionVector(int whichrow) const |
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[1391] | 275 | { return table_->getDirectionVector(whichrow); } |
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| 276 | |
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[1586] | 277 | void parallactify(bool flag) |
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| 278 | { table_->parallactify(flag); } |
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| 279 | |
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[1598] | 280 | STCoordinate getCoordinate(int row) { |
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| 281 | return STCoordinate(table_->getSpectralCoordinate(row)); |
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| 282 | } |
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| 283 | |
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[1730] | 284 | std::vector<float> getWeather(int whichrow) const |
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| 285 | { return table_->getWeather(whichrow); } |
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| 286 | |
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[1819] | 287 | void reshapeSpectrum( int nmin, int nmax ) |
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| 288 | { table_->reshapeSpectrum( nmin, nmax ); } |
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| 289 | |
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[2435] | 290 | void regridSpecChannel( double dnu, int nchan ) |
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| 291 | { table_->regridSpecChannel( dnu, nchan ); } |
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| 292 | |
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[2811] | 293 | std::vector<std::string> applyBaselineTable(const std::string& bltable, const bool returnfitresult, const std::string& outbltable, const bool outbltableexists, const bool overwrite) |
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[3046] | 294 | { |
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| 295 | GILHandler scopedRelease; |
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| 296 | return table_->applyBaselineTable(bltable, returnfitresult, outbltable, outbltableexists, overwrite); |
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| 297 | } |
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[2811] | 298 | std::vector<std::string> subBaseline(const std::vector<std::string>& blinfo, const bool returnfitresult, const std::string& outbltable, const bool outbltableexists, const bool overwrite) |
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[3046] | 299 | { |
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| 300 | GILHandler scopedRelease; |
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| 301 | return table_->subBaseline(blinfo, returnfitresult, outbltable, outbltableexists, overwrite); |
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| 302 | } |
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[2767] | 303 | void polyBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 304 | { table_->polyBaseline(mask, order, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); } |
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[1907] | 305 | |
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[2767] | 306 | void autoPolyBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 307 | { table_->autoPolyBaseline(mask, order, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); } |
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[1907] | 308 | |
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[2767] | 309 | void chebyshevBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 310 | { table_->chebyshevBaseline(mask, order, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); } |
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[2645] | 311 | |
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[2767] | 312 | void autoChebyshevBaseline(const std::vector<bool>& mask, int order, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 313 | { table_->autoChebyshevBaseline(mask, order, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); } |
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[2645] | 314 | |
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[2767] | 315 | void cubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 316 | { table_->cubicSplineBaseline(mask, npiece, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); } |
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[2012] | 317 | |
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[2767] | 318 | void autoCubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 319 | { table_->autoCubicSplineBaseline(mask, npiece, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); } |
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[2012] | 320 | |
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[2767] | 321 | void sinusoidBaseline(const std::vector<bool>& mask, const std::string& fftinfo, const std::vector<int>& addwn, const std::vector<int>& rejwn, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 322 | { table_->sinusoidBaseline(mask, fftinfo, addwn, rejwn, clipthresh, clipniter, getresidual, showprogress, outlog, blfile, bltable); } |
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[2047] | 323 | |
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[2767] | 324 | void autoSinusoidBaseline(const std::vector<bool>& mask, const std::string& fftinfo, const std::vector<int>& addwn, const std::vector<int>& rejwn, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="", const std::string& bltable="") |
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| 325 | { table_->autoSinusoidBaseline(mask, fftinfo, addwn, rejwn, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile, bltable); } |
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[2047] | 326 | |
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[2012] | 327 | float getRms(const std::vector<bool>& mask, int whichrow) |
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| 328 | { return table_->getRms(mask, whichrow); } |
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| 329 | |
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[2641] | 330 | std::string formatBaselineParams(const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false, bool csvformat=false) |
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| 331 | { return table_->formatBaselineParams(params, fixed, rms, -1, masklist, whichrow, verbose, csvformat); } |
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[2012] | 332 | |
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[2641] | 333 | std::string formatPiecewiseBaselineParams(const std::vector<int>& ranges, const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false, bool csvformat=false) |
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| 334 | { return table_->formatPiecewiseBaselineParams(ranges, params, fixed, rms, -1, masklist, whichrow, verbose, csvformat); } |
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[2012] | 335 | |
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[2831] | 336 | bool isAllChannelsFlagged(int whichrow=0) const |
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| 337 | { return table_->isAllChannelsFlagged(casa::uInt(whichrow)); } |
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[1907] | 338 | |
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[2186] | 339 | std::vector<float> execFFT(int whichrow, const std::vector<bool>& mask, bool getRealImag=false, bool getAmplitudeOnly=false) |
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| 340 | { return table_->execFFT(whichrow, mask, getRealImag, getAmplitudeOnly); } |
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[1907] | 341 | |
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[2591] | 342 | std::vector<uint> getMoleculeIdColumnData() const |
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| 343 | { return table_->getMoleculeIdColumnData(); } |
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| 344 | void setMoleculeIdColumnData(const std::vector<uint>& molids) |
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| 345 | { table_->setMoleculeIdColumnData(molids); } |
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[2888] | 346 | |
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| 347 | std::vector<uint> getRootTableRowNumbers() const |
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| 348 | { return table_->getRootTableRowNumbers(); } |
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| 349 | |
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[2713] | 350 | double calculateModelSelectionCriteria(const std::string& valname, const std::string& blfunc, int order, const std::vector<bool>& inMask, int whichrow, bool useLineFinder, const std::vector<int>& edge, float threshold, int chanAvgLimit) |
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| 351 | { return table_->calculateModelSelectionCriteria(valname, blfunc, order, inMask, whichrow, useLineFinder, edge, threshold, chanAvgLimit); } |
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[2012] | 352 | |
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[2789] | 353 | void dropXPol() { table_->dropXPol(); } |
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| 354 | |
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[2] | 355 | private: |
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[847] | 356 | casa::CountedPtr<Scantable> table_; |
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[2] | 357 | }; |
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| 358 | |
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| 359 | } // namespace |
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| 360 | #endif |
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