source: trunk/src/Scantable.h@ 1389

Last change on this file since 1389 was 1385, checked in by mar637, 17 years ago

a couple more explicit keywords for constructors deafaulting to one argument

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1//
2// C++ Interface: Scantable
3//
4// Description:
5//
6//
7// Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2005
8//
9// Copyright: See COPYING file that comes with this distribution
10//
11//
12#ifndef ASAPSCANTABLE_H
13#define ASAPSCANTABLE_H
14
15// STL
16#include <string>
17#include <vector>
18// AIPS++
19#include <casa/aips.h>
20#include <casa/Arrays/MaskedArray.h>
21#include <casa/BasicSL/String.h>
22#include <casa/Utilities/CountedPtr.h>
23
24#include <coordinates/Coordinates/SpectralCoordinate.h>
25
26#include <tables/Tables/Table.h>
27#include <tables/Tables/ArrayColumn.h>
28#include <tables/Tables/ScalarColumn.h>
29
30#include <measures/TableMeasures/ScalarMeasColumn.h>
31
32#include "Logger.h"
33#include "STHeader.h"
34#include "STFrequencies.h"
35#include "STWeather.h"
36#include "STFocus.h"
37#include "STTcal.h"
38#include "STMolecules.h"
39#include "STSelector.h"
40#include "STHistory.h"
41#include "STPol.h"
42#include "STFit.h"
43#include "STFitEntry.h"
44
45namespace asap {
46
47/**
48 * This class contains and wraps a casa::Table, which is used to store
49 * all the information. This can be either a MemoryTable or a
50 * disk based Table.
51 * It provides access functions to the underlying table
52 * It contains n subtables:
53 * @li weather
54 * @li frequencies
55 * @li molecules
56 * @li tcal
57 * @li focus
58 * @li fits
59 *
60 * @brief The main ASAP data container
61 * @author Malte Marquarding
62 * @date
63 * @version
64*/
65class Scantable : private Logger
66{
67
68friend class STMath;
69
70public:
71 /**
72 * Default constructor
73 */
74 explicit Scantable(casa::Table::TableType ttype = casa::Table::Memory);
75
76 /**
77 * Create a Scantable object form an existing table on disk
78 * @param[in] name the name of the existing Scantable
79 */
80 explicit Scantable(const std::string& name, casa::Table::TableType ttype = casa::Table::Memory);
81
82 /// @fixme this is only sensible for MemoryTables....
83 Scantable(const Scantable& other, bool clear=true);
84
85 /**
86 * Destructor
87 */
88 virtual ~Scantable();
89
90 /**
91 * get a const reference to the underlying casa::Table
92 * @return const \ref casa::Table reference
93 */
94 const casa::Table& table() const;
95
96 /**
97 * get a reference to the underlying casa::Table with the Selection
98 * object applied if set
99 * @return casa::Table reference
100 */
101 casa::Table& table();
102
103
104 /**
105 * Get a handle to the selection object
106 * @return constant STSelector reference
107 */
108 const STSelector& getSelection() const { return selector_; }
109
110 /**
111 * Set the data to be a subset as defined by the STSelector
112 * @param selection a STSelector object
113 */
114 void setSelection(const STSelector& selection);
115
116 /**
117 * unset the selection of the data
118 */
119 void unsetSelection();
120 /**
121 * set the header
122 * @param[in] sth an STHeader object
123 */
124 void setHeader( const STHeader& sth );
125
126 /**
127 * get the header information
128 * @return an STHeader object
129 */
130 STHeader getHeader( ) const;
131
132 /**
133 * Checks if the "other" Scantable is conformant with this,
134 * i.e. if header values are the same.
135 * @param[in] other another Scantable
136 * @return true or false
137 */
138 bool conformant( const Scantable& other);
139
140 /**
141 *
142 * @param stype The type of the source, 0 = on, 1 = off
143 */
144 void setSourceType(int stype);
145
146
147 /**
148 * The number of scans in the table
149 * @return number of scans in the table
150 */
151 int nscan() const;
152
153 casa::MEpoch::Types getTimeReference() const;
154
155 /**
156 * Get global antenna position
157 * @return casa::MPosition
158 */
159 casa::MPosition getAntennaPosition() const;
160
161 /**
162 * the @ref casa::MDirection for a specific row
163 * @param[in] whichrow the row number
164 * return casa::MDirection
165 */
166 casa::MDirection getDirection( int whichrow ) const;
167
168 /**
169 * get the direction type as a string, e.g. "J2000"
170 * @param[in] whichrow the row number
171 * return the direction string
172 */
173 std::string getDirectionString( int whichrow ) const;
174
175 /**
176 * set the direction type as a string, e.g. "J2000"
177 * @param[in] refstr the direction type
178 */
179 void setDirectionRefString(const std::string& refstr="");
180 /**
181 * get the direction reference string
182 * @return a string describing the direction reference
183 */
184 std::string getDirectionRefString() const; /**
185 * get the direction type as a string, e.g. "J2000"
186 * param[in] whichrow the row number
187 * return the direction string
188 */
189
190
191 /**
192 * Return the Flux unit of the data, e.g. "Jy" or "K"
193 * @return string
194 */
195 std::string getFluxUnit() const;
196
197 /**
198 * Set the Flux unit of the data
199 * @param unit a string representing the unit, e.g "Jy" or "K"
200 */
201 void setFluxUnit( const std::string& unit );
202
203 /**
204 * Set the Stokes type of the data
205 * @param feedtype a string representing the type, e.g "circular" or "linear"
206 */
207 void setFeedType( const std::string& feedtype );
208
209 /**
210 *
211 * @param instrument a string representing an insturment. see xxx
212 */
213 void setInstrument( const std::string& instrument );
214
215 /**
216 * (Re)calculate the azimuth and elevationnfor all rows
217 */
218 void calculateAZEL();
219
220 /**
221 * "hard" flag the data, this flags everything selected in setSelection()
222 * param[in] msk a boolean mask of length nchan describing the points to
223 * to be flagged
224 */
225 void flag( const std::vector<bool>& msk = std::vector<bool>());
226
227 /**
228 * Return a list of row numbers with respect to the original table.
229 * @return a list of unsigned ints
230 */
231 std::vector<unsigned int> rownumbers() const;
232
233
234 /**
235 * Get the number of beams in the data or a specific scan
236 * @param scanno the scan number to get the number of beams for.
237 * If scanno<0 the number is retrieved from the header.
238 * @return an integer number
239 */
240 int nbeam(int scanno=-1) const;
241 /**
242 * Get the number of IFs in the data or a specific scan
243 * @param scanno the scan number to get the number of IFs for.
244 * If scanno<0 the number is retrieved from the header.
245 * @return an integer number
246 */
247 int nif(int scanno=-1) const;
248 /**
249 * Get the number of polarizations in the data or a specific scan
250 * @param scanno the scan number to get the number of polarizations for.
251 * If scanno<0 the number is retrieved from the header.
252 * @return an integer number
253 */
254 int npol(int scanno=-1) const;
255
256 std::string getPolType() const;
257
258
259 /**
260 * Get the number of integartion cycles
261 * @param scanno the scan number to get the number of rows for.
262 * If scanno<0 the number is retrieved from the header.
263 * @return the number of rows (for the specified scanno)
264 */
265 int nrow(int scanno=-1) const;
266
267 int getBeam(int whichrow) const;
268 std::vector<uint> getBeamNos() { return getNumbers(beamCol_); }
269
270 int getIF(int whichrow) const;
271 std::vector<uint> getIFNos() { return getNumbers(ifCol_); }
272
273 int getPol(int whichrow) const;
274 std::vector<uint> getPolNos() { return getNumbers(polCol_); }
275
276 std::vector<uint> getScanNos() { return getNumbers(scanCol_); }
277 int getScan(int whichrow) const { return scanCol_(whichrow); }
278
279 /**
280 * Get the number of channels in the data or a specific IF. This currently
281 * varies only with IF number
282 * @param ifno the IF number to get the number of channels for.
283 * If ifno<0 the number is retrieved from the header.
284 * @return an integer number
285 */
286 int nchan(int ifno=-1) const;
287 int getChannels(int whichrow) const;
288
289 int ncycle(int scanno=-1) const;
290 int getCycle(int whichrow) const { return cycleCol_(whichrow); }
291
292 double getInterval(int whichrow) const
293 { return integrCol_(whichrow); }
294
295 float getTsys(int whichrow) const
296 { return casa::Vector<casa::Float>(tsysCol_(whichrow))(0); }
297 float getElevation(int whichrow) const
298 { return elCol_(whichrow); }
299 float getAzimuth(int whichrow) const
300 { return azCol_(whichrow); }
301 float getParAngle(int whichrow) const
302 { return paraCol_(whichrow); }
303
304 std::string getSourceName(int whichrow) const
305 { return srcnCol_(whichrow); }
306
307 std::vector<bool> getMask(int whichrow) const;
308 std::vector<float> getSpectrum(int whichrow,
309 const std::string& poltype = "" ) const;
310
311 void setSpectrum(const std::vector<float>& spec, int whichrow);
312
313 std::string getPolarizationLabel(int index, const std::string& ptype) const
314 { return STPol::getPolLabel(index, ptype ); }
315
316 /**
317 * Write the Scantable to disk
318 * @param filename the output file name
319 */
320 void makePersistent(const std::string& filename);
321
322 std::vector<std::string> getHistory() const
323 { return historyTable_.getHistory(); };
324
325 void addHistory(const std::string& hist) { historyTable_.addEntry(hist); }
326
327 void appendToHistoryTable(const STHistory& otherhist)
328 { historyTable_.append(otherhist); }
329
330 std::string summary(bool verbose=false);
331 std::string getTime(int whichrow=-1, bool showdate=true) const;
332 double getIntTime(int whichrow) const { return integrCol_(whichrow); }
333
334 // returns unit, conversion frame, doppler, base-frame
335
336 /**
337 * Get the frequency set up
338 * This is forwarded to the STFrequencies subtable
339 * @return unit, frame, doppler
340 */
341 std::vector<std::string> getCoordInfo() const
342 { return freqTable_.getInfo(); };
343
344 void setCoordInfo(std::vector<string> theinfo)
345 { return freqTable_.setInfo(theinfo); };
346
347
348 std::vector<double> getAbcissa(int whichrow) const;
349
350 std::string getAbcissaLabel(int whichrow) const;
351 std::vector<double> getRestFrequencies() const
352 { return moleculeTable_.getRestFrequencies(); }
353
354 void setRestFrequencies(double rf, const std::string& name = "",
355 const std::string& = "Hz");
356 void setRestFrequencies(const std::string& name);
357
358 void shift(int npix);
359
360 void convertDirection(const std::string& newframe);
361
362 STFrequencies& frequencies() { return freqTable_; }
363 const STFrequencies& frequencies() const { return freqTable_; }
364 STWeather& weather() { return weatherTable_; }
365 const STWeather& weather() const { return weatherTable_; }
366 STFocus& focus() { return focusTable_; }
367 const STFocus& focus() const { return focusTable_; }
368 STTcal& tcal() { return tcalTable_; }
369 const STTcal& tcal() const { return tcalTable_; }
370 STMolecules& molecules() { return moleculeTable_; }
371 const STMolecules& molecules() const { return moleculeTable_; }
372 STHistory& history() { return historyTable_; }
373 const STHistory& history() const { return historyTable_; }
374 STFit& fit() { return fitTable_; }
375 const STFit& fit() const { return fitTable_; }
376
377 std::vector<std::string> columnNames() const;
378
379 void addFit(const STFitEntry& fit, int row);
380 STFitEntry getFit(int row) const
381 { STFitEntry fe; fitTable_.getEntry(fe, mfitidCol_(row)); return fe; }
382
383private:
384
385 casa::Matrix<casa::Float> getPolMatrix( casa::uInt whichrow ) const;
386
387 /**
388 * Turns a time vale into a formatted string
389 * @param x
390 * @return
391 */
392 std::string formatSec(casa::Double x) const;
393
394 std::string formatTime(const casa::MEpoch& me, bool showdate)const;
395
396 /**
397 * Turns a casa::MDirection into a nicely formatted string
398 * @param md an casa::MDirection
399 * @return
400 */
401 std::string formatDirection(const casa::MDirection& md) const;
402
403
404 /**
405 * Create a unique file name for the paged (temporary) table
406 * @return just the name
407 */
408 static casa::String generateName();
409
410 /**
411 * attach to cached columns
412 */
413 void attach();
414
415 /**
416 * Set up the main casa::Table
417 */
418 void setupMainTable();
419
420 void attachSubtables();
421 void copySubtables(const Scantable& other);
422
423 /**
424 * Convert an "old" asap1 style row index into a new index
425 * @param[in] therow
426 * @return and index into @table_
427 */
428 int rowToScanIndex(int therow);
429
430 std::vector<uint> getNumbers(casa::ScalarColumn<casa::uInt>& col);
431
432 static const casa::uInt version_ = 2;
433
434 STSelector selector_;
435
436 casa::Table::TableType type_;
437
438 // the actual data
439 casa::Table table_;
440 casa::Table originalTable_;
441
442 STTcal tcalTable_;
443 STFrequencies freqTable_;
444 STWeather weatherTable_;
445 STFocus focusTable_;
446 STMolecules moleculeTable_;
447 STHistory historyTable_;
448 STFit fitTable_;
449
450 // Cached Columns to avoid reconstructing them for each row get/put
451 casa::ScalarColumn<casa::Double> integrCol_;
452 casa::MDirection::ScalarColumn dirCol_;
453 casa::MEpoch::ScalarColumn timeCol_;
454 casa::ScalarColumn<casa::Float> azCol_;
455 casa::ScalarColumn<casa::Float> elCol_;
456 casa::ScalarColumn<casa::Float> paraCol_;
457 casa::ScalarColumn<casa::String> srcnCol_, fldnCol_;
458 casa::ScalarColumn<casa::uInt> scanCol_, beamCol_, ifCol_, polCol_, cycleCol_;
459 casa::ScalarColumn<casa::Int> rbeamCol_, srctCol_;
460 casa::ArrayColumn<casa::Float> specCol_, tsysCol_;
461 casa::ArrayColumn<casa::uChar> flagsCol_;
462
463 // id in frequencies table
464 casa::ScalarColumn<casa::uInt> mfreqidCol_;
465 // id in tcal table
466 casa::ScalarColumn<casa::uInt> mtcalidCol_;
467
468 casa::ArrayColumn<casa::String> histitemCol_;
469 casa::ScalarColumn<casa::Int> mfitidCol_;
470 casa::ScalarColumn<casa::uInt> mweatheridCol_;
471
472 casa::ScalarColumn<casa::uInt> mfocusidCol_;
473
474 casa::ScalarColumn<casa::uInt> mmolidCol_;
475
476 static std::map<std::string, STPol::STPolFactory *> factories_;
477 void initFactories();
478
479};
480
481
482} // namespace
483
484#endif
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