1 | //
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2 | // C++ Implementation: Scantable
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3 | //
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4 | // Description:
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5 | //
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6 | //
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7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2005
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8 | //
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9 | // Copyright: See COPYING file that comes with this distribution
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10 | //
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11 | //
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12 | #include <map>
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13 |
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14 | #include <casa/aips.h>
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15 | #include <casa/iostream.h>
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16 | #include <casa/iomanip.h>
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17 | #include <casa/OS/Path.h>
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18 | #include <casa/OS/File.h>
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19 | #include <casa/Arrays/Array.h>
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20 | #include <casa/Arrays/ArrayMath.h>
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21 | #include <casa/Arrays/MaskArrMath.h>
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22 | #include <casa/Arrays/ArrayLogical.h>
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23 | #include <casa/Arrays/ArrayAccessor.h>
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24 | #include <casa/Arrays/VectorSTLIterator.h>
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25 | #include <casa/Arrays/Vector.h>
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26 | #include <casa/BasicMath/Math.h>
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27 | #include <casa/BasicSL/Constants.h>
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28 | #include <casa/Quanta/MVAngle.h>
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29 | #include <casa/Containers/RecordField.h>
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30 |
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31 | #include <tables/Tables/TableParse.h>
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32 | #include <tables/Tables/TableDesc.h>
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33 | #include <tables/Tables/TableCopy.h>
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34 | #include <tables/Tables/SetupNewTab.h>
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35 | #include <tables/Tables/ScaColDesc.h>
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36 | #include <tables/Tables/ArrColDesc.h>
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37 | #include <tables/Tables/TableRow.h>
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38 | #include <tables/Tables/TableVector.h>
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39 | #include <tables/Tables/TableIter.h>
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40 |
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41 | #include <tables/Tables/ExprNode.h>
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42 | #include <tables/Tables/TableRecord.h>
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43 | #include <measures/Measures/MFrequency.h>
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44 | #include <measures/Measures/MEpoch.h>
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45 | #include <measures/Measures/MeasTable.h>
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46 | #include <measures/Measures/MeasRef.h>
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47 | #include <measures/TableMeasures/TableMeasRefDesc.h>
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48 | #include <measures/TableMeasures/TableMeasValueDesc.h>
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49 | #include <measures/TableMeasures/TableMeasDesc.h>
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50 | #include <measures/TableMeasures/ScalarMeasColumn.h>
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51 | #include <coordinates/Coordinates/CoordinateUtil.h>
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52 | #include <casa/Quanta/MVTime.h>
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53 | #include <casa/Quanta/MVAngle.h>
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54 |
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55 | #include "Scantable.h"
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56 | #include "SDAttr.h"
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57 |
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58 | using namespace casa;
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59 |
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60 | namespace asap {
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61 |
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62 | Scantable::Scantable(Table::TableType ttype) :
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63 | type_(ttype)
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64 | {
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65 | setupMainTable();
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66 | freqTable_ = STFrequencies(*this);
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67 | table_.rwKeywordSet().defineTable("FREQUENCIES", freqTable_.table());
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68 | weatherTable_ = STWeather(*this);
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69 | table_.rwKeywordSet().defineTable("WEATHER", weatherTable_.table());
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70 | focusTable_ = STFocus(*this);
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71 | table_.rwKeywordSet().defineTable("FOCUS", focusTable_.table());
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72 | tcalTable_ = STTcal(*this);
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73 | table_.rwKeywordSet().defineTable("TCAL", tcalTable_.table());
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74 | moleculeTable_ = STMolecules(*this);
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75 | table_.rwKeywordSet().defineTable("MOLECULES", moleculeTable_.table());
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76 | setupHistoryTable();
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77 | setupFitTable();
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78 | historyTable_ = table_.keywordSet().asTable("HISTORY");
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79 | fitTable_ = table_.keywordSet().asTable("FITS");
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80 | cout << "DEBUG" << endl;
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81 |
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82 | originalTable_ = table_;
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83 | attach();
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84 | cout << "debug" << endl;
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85 | }
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86 |
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87 | Scantable::Scantable(const std::string& name, Table::TableType ttype) :
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88 | type_(ttype)
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89 | {
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90 | Table tab(name);
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91 | Int version;
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92 | tab.keywordSet().get("VERSION", version);
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93 | if (version != version_) {
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94 | throw(AipsError("Unsupported version of ASAP file."));
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95 | }
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96 | if ( type_ == Table::Memory )
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97 | table_ = tab.copyToMemoryTable(generateName());
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98 | else
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99 | table_ = tab;
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100 | freqTable_ = STFrequencies(table_.keywordSet().asTable("FREQUENCIES"));
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101 | focusTable_ = STFocus(table_.keywordSet().asTable("FOCUS"));
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102 | weatherTable_ = STWeather(table_.keywordSet().asTable("WEATHER"));
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103 | tcalTable_ = STTcal(table_.keywordSet().asTable("TCAL"));
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104 | moleculeTable_ = STMolecules(table_.keywordSet().asTable("MOLECULES"));
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105 | originalTable_ = table_;
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106 | attach();
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107 | }
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108 |
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109 |
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110 | Scantable::Scantable( const Scantable& other, bool clear )
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111 | {
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112 | // with or without data
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113 | if (clear) {
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114 | table_ = TableCopy::makeEmptyMemoryTable(String(generateName()),
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115 | other.table_, True);
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116 | } else {
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117 | table_ = other.table_.copyToMemoryTable(String(generateName()));
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118 | }
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119 |
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120 | originalTable_ = table_;
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121 | attach();
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122 | }
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123 |
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124 | Scantable::~Scantable()
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125 | {
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126 | cout << "~Scantable() " << this << endl;
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127 | }
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128 |
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129 | void Scantable::setupMainTable()
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130 | {
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131 | TableDesc td("", "1", TableDesc::Scratch);
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132 | td.comment() = "An ASAP Scantable";
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133 | td.rwKeywordSet().define("VERSION", Int(version_));
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134 |
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135 | // n Cycles
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136 | td.addColumn(ScalarColumnDesc<uInt>("SCANNO"));
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137 | // new index every nBeam x nIF x nPol
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138 | td.addColumn(ScalarColumnDesc<uInt>("CYCLENO"));
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139 |
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140 | td.addColumn(ScalarColumnDesc<uInt>("BEAMNO"));
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141 | td.addColumn(ScalarColumnDesc<uInt>("IFNO"));
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142 | td.rwKeywordSet().define("POLTYPE", String("linear"));
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143 | td.addColumn(ScalarColumnDesc<uInt>("POLNO"));
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144 |
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145 | td.addColumn(ScalarColumnDesc<uInt>("FREQ_ID"));
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146 | td.addColumn(ScalarColumnDesc<uInt>("MOLECULE_ID"));
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147 | // linear, circular, stokes [I Q U V], stokes1 [I Plinear Pangle V]
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148 | td.addColumn(ScalarColumnDesc<Int>("REFBEAMNO"));
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149 |
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150 | td.addColumn(ScalarColumnDesc<Double>("TIME"));
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151 | TableMeasRefDesc measRef(MEpoch::UTC); // UTC as default
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152 | TableMeasValueDesc measVal(td, "TIME");
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153 | TableMeasDesc<MEpoch> mepochCol(measVal, measRef);
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154 | mepochCol.write(td);
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155 |
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156 | td.addColumn(ScalarColumnDesc<Double>("INTERVAL"));
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157 |
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158 | td.addColumn(ScalarColumnDesc<String>("SRCNAME"));
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159 | // Type of source (on=0, off=1, other=-1)
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160 | td.addColumn(ScalarColumnDesc<Int>("SRCTYPE", Int(-1)));
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161 | td.addColumn(ScalarColumnDesc<String>("FIELDNAME"));
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162 |
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163 | //The actual Data Vectors
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164 | td.addColumn(ArrayColumnDesc<Float>("SPECTRA"));
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165 | td.addColumn(ArrayColumnDesc<uChar>("FLAGTRA"));
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166 | td.addColumn(ArrayColumnDesc<Float>("TSYS"));
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167 |
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168 | td.addColumn(ArrayColumnDesc<Double>("DIRECTION",
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169 | IPosition(1,2),
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170 | ColumnDesc::Direct));
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171 | TableMeasRefDesc mdirRef(MDirection::J2000); // default
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172 | TableMeasValueDesc tmvdMDir(td, "DIRECTION");
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173 | // the TableMeasDesc gives the column a type
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174 | TableMeasDesc<MDirection> mdirCol(tmvdMDir, mdirRef);
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175 | // writing create the measure column
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176 | mdirCol.write(td);
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177 | td.addColumn(ScalarColumnDesc<Double>("AZIMUTH"));
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178 | td.addColumn(ScalarColumnDesc<Double>("ELEVATION"));
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179 | td.addColumn(ScalarColumnDesc<Float>("PARANGLE"));
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180 |
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181 | td.addColumn(ScalarColumnDesc<uInt>("TCAL_ID"));
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182 | td.addColumn(ScalarColumnDesc<uInt>("FIT_ID"));
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183 |
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184 | td.addColumn(ScalarColumnDesc<uInt>("FOCUS_ID"));
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185 | td.addColumn(ScalarColumnDesc<uInt>("WEATHER_ID"));
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186 |
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187 | td.rwKeywordSet().define("OBSMODE", String(""));
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188 |
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189 | // Now create Table SetUp from the description.
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190 | SetupNewTable aNewTab(generateName(), td, Table::New);
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191 | table_ = Table(aNewTab, type_, 0);
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192 | originalTable_ = table_;
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193 |
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194 | }
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195 |
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196 | void Scantable::setupHistoryTable( )
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197 | {
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198 | TableDesc tdh("", "1", TableDesc::Scratch);
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199 | tdh.addColumn(ScalarColumnDesc<String>("ITEM"));
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200 | SetupNewTable histtab("history", tdh, Table::New);
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201 | Table histTable(histtab, Table::Memory);
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202 | table_.rwKeywordSet().defineTable("HISTORY", histTable);
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203 | }
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204 |
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205 | void Scantable::setupFitTable()
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206 | {
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207 | TableDesc td("", "1", TableDesc::Scratch);
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208 | td.addColumn(ScalarColumnDesc<uInt>("FIT_ID"));
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209 | td.addColumn(ArrayColumnDesc<String>("FUNCTIONS"));
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210 | td.addColumn(ArrayColumnDesc<Int>("COMPONENTS"));
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211 | td.addColumn(ArrayColumnDesc<Double>("PARAMETERS"));
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212 | td.addColumn(ArrayColumnDesc<Bool>("PARMASK"));
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213 | td.addColumn(ArrayColumnDesc<String>("FRAMEINFO"));
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214 | SetupNewTable aNewTab("fits", td, Table::New);
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215 | Table aTable(aNewTab, Table::Memory);
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216 | table_.rwKeywordSet().defineTable("FITS", aTable);
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217 | }
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218 |
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219 | void Scantable::attach()
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220 | {
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221 | timeCol_.attach(table_, "TIME");
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222 | srcnCol_.attach(table_, "SRCNAME");
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223 | specCol_.attach(table_, "SPECTRA");
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224 | flagsCol_.attach(table_, "FLAGTRA");
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225 | tsCol_.attach(table_, "TSYS");
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226 | cycleCol_.attach(table_,"CYCLENO");
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227 | scanCol_.attach(table_, "SCANNO");
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228 | beamCol_.attach(table_, "BEAMNO");
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229 | ifCol_.attach(table_, "IFNO");
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230 | polCol_.attach(table_, "POLNO");
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231 | integrCol_.attach(table_, "INTERVAL");
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232 | azCol_.attach(table_, "AZIMUTH");
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233 | elCol_.attach(table_, "ELEVATION");
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234 | dirCol_.attach(table_, "DIRECTION");
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235 | paraCol_.attach(table_, "PARANGLE");
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236 | fldnCol_.attach(table_, "FIELDNAME");
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237 | rbeamCol_.attach(table_, "REFBEAMNO");
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238 |
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239 | mfitidCol_.attach(table_,"FIT_ID");
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240 | fitidCol_.attach(fitTable_,"FIT_ID");
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241 |
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242 | mfreqidCol_.attach(table_, "FREQ_ID");
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243 |
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244 | mtcalidCol_.attach(table_, "TCAL_ID");
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245 |
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246 | mfocusidCol_.attach(table_, "FOCUS_ID");
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247 |
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248 | mmolidCol_.attach(table_, "MOLECULE_ID");
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249 | }
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250 |
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251 | void Scantable::setHeader(const SDHeader& sdh)
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252 | {
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253 | table_.rwKeywordSet().define("nIF", sdh.nif);
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254 | table_.rwKeywordSet().define("nBeam", sdh.nbeam);
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255 | table_.rwKeywordSet().define("nPol", sdh.npol);
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256 | table_.rwKeywordSet().define("nChan", sdh.nchan);
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257 | table_.rwKeywordSet().define("Observer", sdh.observer);
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258 | table_.rwKeywordSet().define("Project", sdh.project);
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259 | table_.rwKeywordSet().define("Obstype", sdh.obstype);
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260 | table_.rwKeywordSet().define("AntennaName", sdh.antennaname);
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261 | table_.rwKeywordSet().define("AntennaPosition", sdh.antennaposition);
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262 | table_.rwKeywordSet().define("Equinox", sdh.equinox);
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263 | table_.rwKeywordSet().define("FreqRefFrame", sdh.freqref);
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264 | table_.rwKeywordSet().define("FreqRefVal", sdh.reffreq);
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265 | table_.rwKeywordSet().define("Bandwidth", sdh.bandwidth);
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266 | table_.rwKeywordSet().define("UTC", sdh.utc);
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267 | table_.rwKeywordSet().define("FluxUnit", sdh.fluxunit);
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268 | table_.rwKeywordSet().define("Epoch", sdh.epoch);
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269 | }
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270 |
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271 | SDHeader Scantable::getHeader() const
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272 | {
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273 | SDHeader sdh;
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274 | table_.keywordSet().get("nBeam",sdh.nbeam);
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275 | table_.keywordSet().get("nIF",sdh.nif);
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276 | table_.keywordSet().get("nPol",sdh.npol);
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277 | table_.keywordSet().get("nChan",sdh.nchan);
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278 | table_.keywordSet().get("Observer", sdh.observer);
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279 | table_.keywordSet().get("Project", sdh.project);
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280 | table_.keywordSet().get("Obstype", sdh.obstype);
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281 | table_.keywordSet().get("AntennaName", sdh.antennaname);
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282 | table_.keywordSet().get("AntennaPosition", sdh.antennaposition);
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283 | table_.keywordSet().get("Equinox", sdh.equinox);
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284 | table_.keywordSet().get("FreqRefFrame", sdh.freqref);
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285 | table_.keywordSet().get("FreqRefVal", sdh.reffreq);
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286 | table_.keywordSet().get("Bandwidth", sdh.bandwidth);
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287 | table_.keywordSet().get("UTC", sdh.utc);
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288 | table_.keywordSet().get("FluxUnit", sdh.fluxunit);
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289 | table_.keywordSet().get("Epoch", sdh.epoch);
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290 | return sdh;
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291 | }
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292 |
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293 | bool Scantable::conformant( const Scantable& other )
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294 | {
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295 | return this->getHeader().conformant(other.getHeader());
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296 | }
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297 |
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298 |
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299 | int Scantable::nscan() const {
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300 | int n = 0;
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301 | int previous = -1; int current = 0;
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302 | for (uInt i=0; i< scanCol_.nrow();i++) {
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303 | scanCol_.getScalar(i,current);
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304 | if (previous != current) {
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305 | previous = current;
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306 | n++;
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307 | }
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308 | }
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309 | return n;
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310 | }
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311 |
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312 | std::string Scantable::formatSec(Double x) const
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313 | {
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314 | Double xcop = x;
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315 | MVTime mvt(xcop/24./3600.); // make days
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316 |
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317 | if (x < 59.95)
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318 | return String(" ") + mvt.string(MVTime::TIME_CLEAN_NO_HM, 7)+"s";
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319 | else if (x < 3599.95)
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320 | return String(" ") + mvt.string(MVTime::TIME_CLEAN_NO_H,7)+" ";
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321 | else {
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322 | ostringstream oss;
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323 | oss << setw(2) << std::right << setprecision(1) << mvt.hour();
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324 | oss << ":" << mvt.string(MVTime::TIME_CLEAN_NO_H,7) << " ";
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325 | return String(oss);
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326 | }
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327 | };
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328 |
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329 | std::string Scantable::formatDirection(const MDirection& md) const
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330 | {
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331 | Vector<Double> t = md.getAngle(Unit(String("rad"))).getValue();
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332 | Int prec = 7;
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333 |
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334 | MVAngle mvLon(t[0]);
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335 | String sLon = mvLon.string(MVAngle::TIME,prec);
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336 | MVAngle mvLat(t[1]);
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337 | String sLat = mvLat.string(MVAngle::ANGLE+MVAngle::DIG2,prec);
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338 | return sLon + String(" ") + sLat;
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339 | }
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340 |
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341 |
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342 | std::string Scantable::getFluxUnit() const
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343 | {
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344 | return table_.keywordSet().asString("FluxUnit");
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345 | }
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346 |
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347 | void Scantable::setFluxUnit(const std::string& unit)
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348 | {
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349 | String tmp(unit);
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350 | Unit tU(tmp);
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351 | if (tU==Unit("K") || tU==Unit("Jy")) {
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352 | table_.rwKeywordSet().define(String("FluxUnit"), tmp);
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353 | } else {
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354 | throw AipsError("Illegal unit - must be compatible with Jy or K");
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355 | }
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356 | }
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357 |
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358 | void Scantable::setInstrument(const std::string& name)
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359 | {
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360 | bool throwIt = true;
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361 | Instrument ins = SDAttr::convertInstrument(name, throwIt);
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362 | String nameU(name);
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363 | nameU.upcase();
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364 | table_.rwKeywordSet().define(String("AntennaName"), nameU);
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365 | }
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366 |
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367 | MPosition Scantable::getAntennaPosition () const
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368 | {
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369 | Vector<Double> antpos;
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370 | table_.keywordSet().get("AntennaPosition", antpos);
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371 | MVPosition mvpos(antpos(0),antpos(1),antpos(2));
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372 | return MPosition(mvpos);
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373 | }
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374 |
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375 | void Scantable::makePersistent(const std::string& filename)
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376 | {
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377 | String inname(filename);
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378 | Path path(inname);
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379 | inname = path.expandedName();
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380 | table_.deepCopy(inname, Table::New);
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381 | }
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382 |
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383 | int Scantable::nbeam( int scanno ) const
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384 | {
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385 | if ( scanno < 0 ) {
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386 | Int n;
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387 | table_.keywordSet().get("nBeam",n);
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388 | return int(n);
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389 | } else {
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390 | // take the first POLNO,IFNO,CYCLENO as nbeam shouldn't vary with these
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391 | Table tab = table_(table_.col("SCANNO") == scanno
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392 | && table_.col("POLNO") == 0
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393 | && table_.col("IFNO") == 0
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394 | && table_.col("CYCLENO") == 0 );
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395 | ROTableVector<uInt> v(tab, "BEAMNO");
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396 | return int(v.nelements());
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397 | }
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398 | return 0;
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399 | }
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400 |
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401 | int Scantable::nif( int scanno ) const
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402 | {
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403 | if ( scanno < 0 ) {
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404 | Int n;
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405 | table_.keywordSet().get("nIF",n);
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406 | return int(n);
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407 | } else {
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408 | // take the first POLNO,BEAMNO,CYCLENO as nbeam shouldn't vary with these
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409 | Table tab = table_(table_.col("SCANNO") == scanno
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410 | && table_.col("POLNO") == 0
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411 | && table_.col("BEAMNO") == 0
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412 | && table_.col("CYCLENO") == 0 );
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413 | ROTableVector<uInt> v(tab, "IFNO");
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414 | return int(v.nelements());
|
---|
415 | }
|
---|
416 | return 0;
|
---|
417 | }
|
---|
418 |
|
---|
419 | int Scantable::npol( int scanno ) const
|
---|
420 | {
|
---|
421 | if ( scanno < 0 ) {
|
---|
422 | Int n;
|
---|
423 | table_.keywordSet().get("nPol",n);
|
---|
424 | return n;
|
---|
425 | } else {
|
---|
426 | // take the first POLNO,IFNO,CYCLENO as nbeam shouldn't vary with these
|
---|
427 | Table tab = table_(table_.col("SCANNO") == scanno
|
---|
428 | && table_.col("IFNO") == 0
|
---|
429 | && table_.col("BEAMNO") == 0
|
---|
430 | && table_.col("CYCLENO") == 0 );
|
---|
431 | ROTableVector<uInt> v(tab, "POLNO");
|
---|
432 | return int(v.nelements());
|
---|
433 | }
|
---|
434 | return 0;
|
---|
435 | }
|
---|
436 |
|
---|
437 | int Scantable::ncycle( int scanno ) const
|
---|
438 | {
|
---|
439 | if ( scanno < 0 ) {
|
---|
440 | Block<String> cols(2);
|
---|
441 | cols[0] = "SCANNO";
|
---|
442 | cols[1] = "CYCLENO";
|
---|
443 | TableIterator it(table_, cols);
|
---|
444 | int n = 0;
|
---|
445 | while ( !it.pastEnd() ) {
|
---|
446 | ++n;
|
---|
447 | }
|
---|
448 | return n;
|
---|
449 | } else {
|
---|
450 | // take the first POLNO,IFNO,CYCLENO as nbeam shouldn't vary with these
|
---|
451 | Table tab = table_(table_.col("SCANNO") == scanno
|
---|
452 | && table_.col("BEAMNO") == 0
|
---|
453 | && table_.col("IFNO") == 0
|
---|
454 | && table_.col("POLNO") == 0 );
|
---|
455 | return int(tab.nrow());
|
---|
456 | }
|
---|
457 | return 0;
|
---|
458 | }
|
---|
459 |
|
---|
460 |
|
---|
461 | int Scantable::nrow( int scanno ) const
|
---|
462 | {
|
---|
463 | return int(table_.nrow());
|
---|
464 | }
|
---|
465 |
|
---|
466 | int Scantable::nchan( int ifno ) const
|
---|
467 | {
|
---|
468 | if ( ifno < 0 ) {
|
---|
469 | Int n;
|
---|
470 | table_.keywordSet().get("nChan",n);
|
---|
471 | return int(n);
|
---|
472 | } else {
|
---|
473 | // take the first SCANNO,POLNO,BEAMNO,CYCLENO as nbeam shouldn't vary with these
|
---|
474 | Table tab = table_(table_.col("SCANNO") == 0
|
---|
475 | && table_.col("IFNO") == ifno
|
---|
476 | && table_.col("BEAMNO") == 0
|
---|
477 | && table_.col("POLNO") == 0
|
---|
478 | && table_.col("CYCLENO") == 0 );
|
---|
479 | ROArrayColumn<Float> v(tab, "SPECTRA");
|
---|
480 | return v(0).nelements();
|
---|
481 | }
|
---|
482 | return 0;
|
---|
483 | }
|
---|
484 |
|
---|
485 |
|
---|
486 | int Scantable::getBeam(int whichrow) const
|
---|
487 | {
|
---|
488 | return beamCol_(whichrow);
|
---|
489 | }
|
---|
490 |
|
---|
491 | int Scantable::getIF(int whichrow) const
|
---|
492 | {
|
---|
493 | return ifCol_(whichrow);
|
---|
494 | }
|
---|
495 |
|
---|
496 | int Scantable::getPol(int whichrow) const
|
---|
497 | {
|
---|
498 | return polCol_(whichrow);
|
---|
499 | }
|
---|
500 |
|
---|
501 | Table Scantable::getHistoryTable() const
|
---|
502 | {
|
---|
503 | return table_.keywordSet().asTable("HISTORY");
|
---|
504 | }
|
---|
505 |
|
---|
506 | void Scantable::appendToHistoryTable(const Table& otherHist)
|
---|
507 | {
|
---|
508 | Table t = table_.rwKeywordSet().asTable("HISTORY");
|
---|
509 |
|
---|
510 | addHistory(asap::SEPERATOR);
|
---|
511 | TableCopy::copyRows(t, otherHist, t.nrow(), 0, otherHist.nrow());
|
---|
512 | addHistory(asap::SEPERATOR);
|
---|
513 | }
|
---|
514 |
|
---|
515 | void Scantable::addHistory(const std::string& hist)
|
---|
516 | {
|
---|
517 | Table t = table_.rwKeywordSet().asTable("HISTORY");
|
---|
518 | uInt nrow = t.nrow();
|
---|
519 | t.addRow();
|
---|
520 | ScalarColumn<String> itemCol(t, "ITEM");
|
---|
521 | itemCol.put(nrow, hist);
|
---|
522 | }
|
---|
523 |
|
---|
524 | std::vector<std::string> Scantable::getHistory() const
|
---|
525 | {
|
---|
526 | Vector<String> history;
|
---|
527 | const Table& t = table_.keywordSet().asTable("HISTORY");
|
---|
528 | uInt nrow = t.nrow();
|
---|
529 | ROScalarColumn<String> itemCol(t, "ITEM");
|
---|
530 | std::vector<std::string> stlout;
|
---|
531 | String hist;
|
---|
532 | for (uInt i=0; i<nrow; ++i) {
|
---|
533 | itemCol.get(i, hist);
|
---|
534 | stlout.push_back(hist);
|
---|
535 | }
|
---|
536 | return stlout;
|
---|
537 | }
|
---|
538 |
|
---|
539 | std::string Scantable::formatTime(const MEpoch& me, bool showdate) const
|
---|
540 | {
|
---|
541 | MVTime mvt(me.getValue());
|
---|
542 | if (showdate)
|
---|
543 | mvt.setFormat(MVTime::YMD);
|
---|
544 | else
|
---|
545 | mvt.setFormat(MVTime::TIME);
|
---|
546 | ostringstream oss;
|
---|
547 | oss << mvt;
|
---|
548 | return String(oss);
|
---|
549 | }
|
---|
550 |
|
---|
551 | void Scantable::calculateAZEL()
|
---|
552 | {
|
---|
553 | MPosition mp = getAntennaPosition();
|
---|
554 | MEpoch::ROScalarColumn timeCol(table_, "TIME");
|
---|
555 | ostringstream oss;
|
---|
556 | oss << "Computed azimuth/elevation using " << endl
|
---|
557 | << mp << endl;
|
---|
558 | for (uInt i=0; i<nrow(); ++i) {
|
---|
559 | MEpoch me = timeCol(i);
|
---|
560 | MDirection md = dirCol_(i);
|
---|
561 | dirCol_.get(i,md);
|
---|
562 | oss << " Time: " << formatTime(me,False) << " Direction: " << formatDirection(md)
|
---|
563 | << endl << " => ";
|
---|
564 | MeasFrame frame(mp, me);
|
---|
565 | Vector<Double> azel =
|
---|
566 | MDirection::Convert(md, MDirection::Ref(MDirection::AZEL,
|
---|
567 | frame)
|
---|
568 | )().getAngle("rad").getValue();
|
---|
569 | azCol_.put(i,azel[0]);
|
---|
570 | elCol_.put(i,azel[1]);
|
---|
571 | oss << "azel: " << azel[0]/C::pi*180.0 << " "
|
---|
572 | << azel[1]/C::pi*180.0 << " (deg)" << endl;
|
---|
573 | }
|
---|
574 | pushLog(String(oss));
|
---|
575 | }
|
---|
576 |
|
---|
577 | std::vector<bool> Scantable::getMask(int whichrow) const
|
---|
578 | {
|
---|
579 | Vector<uChar> flags;
|
---|
580 | flagsCol_.get(uInt(whichrow), flags);
|
---|
581 | Vector<Bool> bflag(flags.shape());
|
---|
582 | convertArray(bflag, flags);
|
---|
583 | bflag = !bflag;
|
---|
584 | std::vector<bool> mask;
|
---|
585 | bflag.tovector(mask);
|
---|
586 | return mask;
|
---|
587 | }
|
---|
588 |
|
---|
589 | std::vector<float> Scantable::getSpectrum(int whichrow) const
|
---|
590 | {
|
---|
591 | Vector<Float> arr;
|
---|
592 | specCol_.get(whichrow, arr);
|
---|
593 | std::vector<float> out;
|
---|
594 | arr.tovector(out);
|
---|
595 | return out;
|
---|
596 | }
|
---|
597 |
|
---|
598 | String Scantable::generateName()
|
---|
599 | {
|
---|
600 | return (File::newUniqueName("./","temp")).baseName();
|
---|
601 | }
|
---|
602 |
|
---|
603 | const casa::Table& Scantable::table( ) const
|
---|
604 | {
|
---|
605 | return table_;
|
---|
606 | }
|
---|
607 |
|
---|
608 | casa::Table& Scantable::table( )
|
---|
609 | {
|
---|
610 | return table_;
|
---|
611 | }
|
---|
612 |
|
---|
613 | std::string Scantable::getPolarizationLabel(bool linear, bool stokes,
|
---|
614 | bool linpol, int polidx) const
|
---|
615 | {
|
---|
616 | uInt idx = 0;
|
---|
617 | if (polidx >=0) idx = polidx;
|
---|
618 | return "";
|
---|
619 | //return SDPolUtil::polarizationLabel(idx, linear, stokes, linpol);
|
---|
620 | }
|
---|
621 |
|
---|
622 | void Scantable::unsetSelection()
|
---|
623 | {
|
---|
624 | table_ = originalTable_;
|
---|
625 | attach();
|
---|
626 | selector_.reset();
|
---|
627 | }
|
---|
628 |
|
---|
629 | void Scantable::setSelection( const STSelector& selection )
|
---|
630 | {
|
---|
631 | Table tab = const_cast<STSelector&>(selection).apply(originalTable_);
|
---|
632 | if ( tab.nrow() == 0 ) {
|
---|
633 | throw(AipsError("Selection contains no data. Not applying it."));
|
---|
634 | }
|
---|
635 | table_ = tab;
|
---|
636 | attach();
|
---|
637 | selector_ = selection;
|
---|
638 | }
|
---|
639 |
|
---|
640 | std::string Scantable::summary( bool verbose )
|
---|
641 | {
|
---|
642 | // Format header info
|
---|
643 | ostringstream oss;
|
---|
644 | oss << endl;
|
---|
645 | oss << asap::SEPERATOR << endl;
|
---|
646 | oss << " Scan Table Summary" << endl;
|
---|
647 | oss << asap::SEPERATOR << endl;
|
---|
648 | oss.flags(std::ios_base::left);
|
---|
649 | oss << setw(15) << "Beams:" << setw(4) << nbeam() << endl
|
---|
650 | << setw(15) << "IFs:" << setw(4) << nif() << endl
|
---|
651 | << setw(15) << "Polarisations:" << setw(4) << npol() << endl
|
---|
652 | << setw(15) << "Channels:" << setw(4) << nchan() << endl;
|
---|
653 | oss << endl;
|
---|
654 | String tmp;
|
---|
655 | //table_.keywordSet().get("Observer", tmp);
|
---|
656 | oss << setw(15) << "Observer:" << table_.keywordSet().asString("Observer") << endl;
|
---|
657 | oss << setw(15) << "Obs Date:" << getTime(-1,true) << endl;
|
---|
658 | table_.keywordSet().get("Project", tmp);
|
---|
659 | oss << setw(15) << "Project:" << tmp << endl;
|
---|
660 | table_.keywordSet().get("Obstype", tmp);
|
---|
661 | oss << setw(15) << "Obs. Type:" << tmp << endl;
|
---|
662 | table_.keywordSet().get("AntennaName", tmp);
|
---|
663 | oss << setw(15) << "Antenna Name:" << tmp << endl;
|
---|
664 | table_.keywordSet().get("FluxUnit", tmp);
|
---|
665 | oss << setw(15) << "Flux Unit:" << tmp << endl;
|
---|
666 | Vector<Float> vec;
|
---|
667 | oss << setw(15) << "Rest Freqs:";
|
---|
668 | if (vec.nelements() > 0) {
|
---|
669 | oss << setprecision(10) << vec << " [Hz]" << endl;
|
---|
670 | } else {
|
---|
671 | oss << "none" << endl;
|
---|
672 | }
|
---|
673 | oss << setw(15) << "Abcissa:" << "channel" << endl;
|
---|
674 | oss << selector_.print() << endl;
|
---|
675 | oss << endl;
|
---|
676 | // main table
|
---|
677 | String dirtype = "Position ("
|
---|
678 | + MDirection::showType(dirCol_.getMeasRef().getType())
|
---|
679 | + ")";
|
---|
680 | oss << setw(5) << "Scan"
|
---|
681 | << setw(15) << "Source"
|
---|
682 | // << setw(24) << dirtype
|
---|
683 | << setw(10) << "Time"
|
---|
684 | << setw(18) << "Integration" << endl
|
---|
685 | << setw(5) << "" << setw(10) << "Beam" << dirtype << endl
|
---|
686 | << setw(15) << "" << setw(5) << "IF"
|
---|
687 | << setw(8) << "Frame" << setw(16)
|
---|
688 | << "RefVal" << setw(10) << "RefPix" << setw(12) << "Increment" <<endl;
|
---|
689 | oss << asap::SEPERATOR << endl;
|
---|
690 | TableIterator iter(table_, "SCANNO");
|
---|
691 | while (!iter.pastEnd()) {
|
---|
692 | Table subt = iter.table();
|
---|
693 | ROTableRow row(subt);
|
---|
694 | MEpoch::ROScalarColumn timeCol(subt,"TIME");
|
---|
695 | const TableRecord& rec = row.get(0);
|
---|
696 | oss << setw(4) << std::right << rec.asuInt("SCANNO")
|
---|
697 | << std::left << setw(1) << ""
|
---|
698 | << setw(15) << rec.asString("SRCNAME")
|
---|
699 | << setw(10) << formatTime(timeCol(0), false);
|
---|
700 | // count the cycles in the scan
|
---|
701 | TableIterator cyciter(subt, "CYCLENO");
|
---|
702 | int nint = 0;
|
---|
703 | while (!cyciter.pastEnd()) {
|
---|
704 | ++nint;
|
---|
705 | ++cyciter;
|
---|
706 | }
|
---|
707 | oss << setw(3) << std::right << nint << setw(3) << " x " << std::left
|
---|
708 | << setw(6) << formatSec(rec.asFloat("INTERVAL")) << endl;
|
---|
709 |
|
---|
710 | TableIterator biter(subt, "BEAMNO");
|
---|
711 | while (!biter.pastEnd()) {
|
---|
712 | Table bsubt = biter.table();
|
---|
713 | ROTableRow brow(bsubt);
|
---|
714 | MDirection::ROScalarColumn bdirCol(bsubt,"DIRECTION");
|
---|
715 | const TableRecord& brec = brow.get(0);
|
---|
716 | oss << setw(6) << "" << setw(10) << brec.asuInt("BEAMNO");
|
---|
717 | oss << setw(24) << formatDirection(bdirCol(0)) << endl;
|
---|
718 | TableIterator iiter(bsubt, "IFNO");
|
---|
719 | while (!iiter.pastEnd()) {
|
---|
720 | Table isubt = iiter.table();
|
---|
721 | ROTableRow irow(isubt);
|
---|
722 | const TableRecord& irec = irow.get(0);
|
---|
723 | oss << std::right <<setw(8) << "" << std::left << irec.asuInt("IFNO");
|
---|
724 | oss << frequencies().print(irec.asuInt("FREQ_ID"));
|
---|
725 |
|
---|
726 | ++iiter;
|
---|
727 | }
|
---|
728 | ++biter;
|
---|
729 | }
|
---|
730 | ++iter;
|
---|
731 | }
|
---|
732 | /// @todo implement verbose mode
|
---|
733 | return String(oss);
|
---|
734 | }
|
---|
735 |
|
---|
736 | std::string Scantable::getTime(int whichrow, bool showdate) const
|
---|
737 | {
|
---|
738 | MEpoch::ROScalarColumn timeCol(table_, "TIME");
|
---|
739 | MEpoch me;
|
---|
740 | if (whichrow > -1) {
|
---|
741 | me = timeCol(uInt(whichrow));
|
---|
742 | } else {
|
---|
743 | Double tm;
|
---|
744 | table_.keywordSet().get("UTC",tm);
|
---|
745 | me = MEpoch(MVEpoch(tm));
|
---|
746 | }
|
---|
747 | return formatTime(me, showdate);
|
---|
748 | }
|
---|
749 |
|
---|
750 | std::string Scantable::getAbcissaLabel( int whichrow ) const
|
---|
751 | {
|
---|
752 | if ( whichrow > table_.nrow() ) throw(AipsError("Illegal ro number"));
|
---|
753 | const MPosition& mp = getAntennaPosition();
|
---|
754 | const MDirection& md = dirCol_(whichrow);
|
---|
755 | const MEpoch& me = timeCol_(whichrow);
|
---|
756 | const Double& rf = mmolidCol_(whichrow);
|
---|
757 | SpectralCoordinate spc =
|
---|
758 | freqTable_.getSpectralCoordinate(md, mp, me, rf, mfreqidCol_(whichrow));
|
---|
759 |
|
---|
760 | String s = "Channel";
|
---|
761 | Unit u = Unit(freqTable_.getUnitString());
|
---|
762 | if (u == Unit("km/s")) {
|
---|
763 | s = CoordinateUtil::axisLabel(spc,0,True,True,True);
|
---|
764 | } else if (u == Unit("Hz")) {
|
---|
765 | Vector<String> wau(1);wau = u.getName();
|
---|
766 | spc.setWorldAxisUnits(wau);
|
---|
767 |
|
---|
768 | s = CoordinateUtil::axisLabel(spc,0,True,True,False);
|
---|
769 | }
|
---|
770 | return s;
|
---|
771 |
|
---|
772 | }
|
---|
773 |
|
---|
774 | void asap::Scantable::setRestFrequencies( double rf, const std::string& unit )
|
---|
775 | {
|
---|
776 | ///@todo lookup in line table
|
---|
777 | Unit u(unit);
|
---|
778 | Quantum<Double> urf(rf, u);
|
---|
779 | uInt id = moleculeTable_.addEntry(urf.getValue("Hz"), "", "");
|
---|
780 | TableVector<uInt> tabvec(table_, "MOLECULE_ID");
|
---|
781 | tabvec = id;
|
---|
782 | }
|
---|
783 |
|
---|
784 | void asap::Scantable::setRestFrequencies( const std::string& name )
|
---|
785 | {
|
---|
786 | throw(AipsError("setRestFrequencies( const std::string& name ) NYI"));
|
---|
787 | ///@todo implement
|
---|
788 | }
|
---|
789 |
|
---|
790 | std::vector< unsigned int > asap::Scantable::rownumbers( ) const
|
---|
791 | {
|
---|
792 | std::vector<unsigned int> stlout;
|
---|
793 | Vector<uInt> vec = table_.rowNumbers();
|
---|
794 | vec.tovector(stlout);
|
---|
795 | return stlout;
|
---|
796 | }
|
---|
797 |
|
---|
798 | }//namespace asap
|
---|