| [470] | 1 | //#---------------------------------------------------------------------------
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| [822] | 2 | //# STWriter.cc: ASAP class to write out single dish spectra.
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| [28] | 3 | //#---------------------------------------------------------------------------
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| 4 | //# Copyright (C) 2004
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| [125] | 5 | //# ATNF
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| [28] | 6 | //#
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| 7 | //# This program is free software; you can redistribute it and/or modify it
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| 8 | //# under the terms of the GNU General Public License as published by the Free
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| 9 | //# Software Foundation; either version 2 of the License, or (at your option)
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| 10 | //# any later version.
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| 11 | //#
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| 12 | //# This program is distributed in the hope that it will be useful, but
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| 13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
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| 15 | //# Public License for more details.
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| 16 | //#
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| 17 | //# You should have received a copy of the GNU General Public License along
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| 18 | //# with this program; if not, write to the Free Software Foundation, Inc.,
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| 19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
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| 20 | //#
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| 21 | //# Correspondence concerning this software should be addressed as follows:
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| 22 | //# Internet email: Malte.Marquarding@csiro.au
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| 23 | //# Postal address: Malte Marquarding,
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| 24 | //# Australia Telescope National Facility,
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| 25 | //# P.O. Box 76,
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| 26 | //# Epping, NSW, 2121,
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| 27 | //# AUSTRALIA
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| 28 | //#
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| 29 | //# $Id: STWriter.cpp 822 2006-02-16 23:05:16Z mar637 $
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| 30 | //#---------------------------------------------------------------------------
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| 31 |
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| 32 | #include <string>
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| 33 |
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| [81] | 34 | #include <casa/aips.h>
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| [470] | 35 | #include <casa/Arrays/Array.h>
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| 36 | #include <casa/Arrays/Vector.h>
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| [81] | 37 | #include <casa/BasicSL/Complex.h>
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| 38 | #include <casa/Utilities/CountedPtr.h>
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| [470] | 39 | #include <casa/Utilities/Assert.h>
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| [28] | 40 |
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| 41 | #include <atnf/PKSIO/PKSMS2writer.h>
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| 42 | #include <atnf/PKSIO/PKSSDwriter.h>
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| 43 |
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| [324] | 44 | #include <tables/Tables/ArrayColumn.h>
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| 45 |
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| 46 |
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| [470] | 47 |
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| 48 |
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| [60] | 49 | #include "SDContainer.h"
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| 50 | #include "SDMemTable.h"
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| [822] | 51 | #include "STWriter.h"
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| [192] | 52 | #include "SDFITSImageWriter.h"
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| [199] | 53 | #include "SDAsciiWriter.h"
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| [470] | 54 | #include "SDPol.h"
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| [28] | 55 |
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| [125] | 56 | using namespace casa;
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| [83] | 57 | using namespace asap;
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| [28] | 58 |
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| [822] | 59 | //--------------------------------------------------------- STWriter::STWriter
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| [28] | 60 |
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| 61 | // Default constructor.
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| 62 |
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| [822] | 63 | STWriter::STWriter(const std::string &format)
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| [28] | 64 | {
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| 65 | cFormat = format;
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| [192] | 66 | //
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| [450] | 67 | String t(cFormat);
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| 68 | t.upcase();
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| 69 | if (t== "MS2") {
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| [28] | 70 | cWriter = new PKSMS2writer();
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| [450] | 71 | } else if (t== "SDFITS") {
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| [28] | 72 | cWriter = new PKSSDwriter();
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| [450] | 73 | } else if (t== "FITS") {
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| [192] | 74 | cWriter = 0;
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| [450] | 75 | } else if (t== "ASCII") {
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| [199] | 76 | cWriter = 0;
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| [450] | 77 | } else {
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| 78 | throw (AipsError("Unrecognized Format"));
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| [28] | 79 | }
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| 80 | }
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| 81 |
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| [822] | 82 | //-------------------------------------------------------- STWriter::~STWriter
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| [28] | 83 |
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| 84 | // Destructor.
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| 85 |
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| [822] | 86 | STWriter::~STWriter()
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| [28] | 87 | {
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| [192] | 88 | if (cWriter) {
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| 89 | delete cWriter;
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| 90 | }
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| [28] | 91 | }
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| 92 |
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| [822] | 93 | //-------------------------------------------------------- STWriter::setFormat
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| [28] | 94 |
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| 95 | // Reset the output format.
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| 96 |
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| [822] | 97 | Int STWriter::setFormat(const std::string &format)
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| [28] | 98 | {
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| 99 | if (format != cFormat) {
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| [192] | 100 | if (cWriter) delete cWriter;
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| [450] | 101 | }
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| [192] | 102 | //
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| [450] | 103 | cFormat = format;
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| 104 | String t(cFormat);
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| 105 | t.upcase();
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| 106 | if (t== "MS2") {
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| 107 | cWriter = new PKSMS2writer();
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| 108 | } else if (t== "SDFITS") {
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| 109 | cWriter = new PKSSDwriter();
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| 110 | } else if (t== "FITS") {
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| 111 | cWriter = 0;
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| 112 | } else if (t== "ASCII") {
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| 113 | cWriter = 0;
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| 114 | } else {
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| 115 | throw (AipsError("Unrecognized Format"));
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| [28] | 116 | }
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| 117 | return 0;
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| 118 | }
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| 119 |
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| [822] | 120 | //------------------------------------------------------------ STWriter::write
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| [28] | 121 |
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| 122 | // Write an SDMemTable to file in the desired format, closing the file when
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| 123 | // finished.
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| 124 |
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| [822] | 125 | Int STWriter::write(const CountedPtr<SDMemTable> in,
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| [442] | 126 | const std::string &filename, Bool toStokes)
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| [28] | 127 | {
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| [192] | 128 |
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| 129 | // Image FITS
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| 130 |
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| 131 | if (cFormat=="FITS") {
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| 132 | Bool verbose = True;
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| 133 | SDFITSImageWriter iw;
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| [442] | 134 | if (iw.write(*in, filename, verbose, toStokes)) {
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| [192] | 135 | return 0;
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| 136 | } else {
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| 137 | return 1;
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| 138 | }
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| [199] | 139 | } else if (cFormat=="ASCII") {
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| 140 | SDAsciiWriter iw;
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| [442] | 141 | if (iw.write(*in, filename, toStokes)) {
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| [199] | 142 | return 0;
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| 143 | } else {
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| 144 | return 1;
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| 145 | }
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| 146 | }
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| [192] | 147 |
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| 148 | // MS or SDFITS
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| 149 |
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| [28] | 150 | // Extract the header from the table.
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| [324] | 151 | SDHeader hdr = in->getSDHeader();
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| 152 | const Int nPol = hdr.npol;
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| 153 | const Int nChan = hdr.nchan;
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| [28] | 154 |
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| [324] | 155 | // Get Freq table
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| 156 |
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| 157 | SDFrequencyTable sdft = in->getSDFreqTable();
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| 158 | Vector<Double> restFreqs;
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| 159 | String restFreqUnit;
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| 160 | sdft.restFrequencies(restFreqs, restFreqUnit);
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| 161 | Double restFreq = 0.0;
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| 162 | if (restFreqs.nelements()>0) {
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| 163 | Quantum<Double> rF(restFreqs(0), Unit(restFreqUnit));
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| 164 | restFreq = rF.getValue(Unit("Hz"));
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| 165 | }
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| 166 |
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| 167 | // Table columns
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| 168 |
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| 169 | const Table table = in->table();
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| 170 | ROArrayColumn<uInt> freqIDCol(table, "FREQID");
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| 171 | Vector<uInt> freqIDs;
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| 172 |
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| [28] | 173 | // Create the output file and write static data.
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| 174 | Int status;
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| 175 | if (status = cWriter->create(filename, hdr.observer, hdr.project,
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| 176 | hdr.antennaname, hdr.antennaposition,
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| 177 | hdr.obstype, hdr.equinox, hdr.freqref,
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| 178 | nChan, nPol, False, False)) {
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| [717] | 179 | throw(AipsError("Failed to create output file"));
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| [28] | 180 | }
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| 181 |
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| [822] | 182 | Vector<Double> srcPM(2, 0.0);
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| 183 | Double srcVel = 0.0;
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| 184 |
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| [470] | 185 | Array<Float> spectra, tSys, stokes;
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| 186 | Array<uChar> flags;
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| 187 | Bool doLinear = True;
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| [822] | 188 |
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| 189 | String fieldName, srcName, tcalTime;
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| 190 | Vector<Float> calFctr, sigma, tcal, tsys;
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| 191 | Vector<Double> direction(2), scanRate(2), srcDir(2), srcPM(2,0.0);
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| 192 | Matrix<Float> spectra;
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| 193 | Matrix<uChar> flagtra;
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| 194 | Complex xCalFctr;
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| [28] | 195 | Int count = 0;
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| [822] | 196 | Int scanno = 1;
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| 197 | // use spearate iterators to ensure renumbering of all numbers
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| 198 | TableIterator scanit(table, "SCANNO");
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| 199 | while (!scanit.pastEnd() ) {
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| 200 | Table stable = scanit.table();
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| 201 | TableIterator beamit(table, "BEAMNO");
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| 202 | Int beamno = 1;
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| 203 | while (!beamit.pastEnd() ) {
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| 204 | Table btable = beamit.table();
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| 205 | TableIterator ifit(btable, "IFNO");
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| 206 | Int ifno = 1;
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| 207 | while (!ifit.pastEnd() ) {
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| 208 | Table itable = ifit.table();
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| 209 | TableIterator cycit(itable, "CYCLENO");
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| 210 | Int cycno = 1;
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| 211 | while (!cycit.pastEnd() ) {
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| 212 | Table ctable = cycit.table();
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| 213 | TableRow row(ctable);
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| 214 | // use the first row to fill in all the "metadata"
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| 215 | const TableRecord& rec = row.record(0);
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| 216 | ROArrayColumn<Float> specCol(ctable, "SPECTRA");
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| 217 | uInt nchan = specCol(0).nelements();
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| 218 | Double cdelt,crval,crpix, restfreq;
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| 219 | String tmp,tmp2;
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| 220 | in->frequencies().getEntry(crpix,crval,cdelt, rec.asuInt("FREQ_ID"));
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| 221 | in->molecules().getEntry(restfreq,tmp,tmp2,rec.asuInt("RESTFREQ_ID"));
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| 222 | Double pixel = Double(nchan/2);
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| 223 | Double refFreqNew = (pixel-crpix)*cdelt + crval;
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| 224 | // ok, now we have nrows for the n polarizations in this table
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| 225 | Matrix<Float> specs;
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| 226 | Matrix<uChar> flags;
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| 227 | Vector<Complex> xpol;
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| 228 | polConversion(specs, flags, xpol, ctable);
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| 229 | // dummy data
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| 230 | uInt nPol = specs.ncolumns();
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| 231 | Matrix<Float> baseLin(npol,2, 0.0f);
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| 232 | Matrix<Float> baseSub(npol,9, 0.0f);
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| 233 | Complex xCalFctr;
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| 234 | Vector<Double> scanRate(2, 0.0);
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| 235 | Vector<Float> sigma(npol, 0.0f);
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| 236 | Vector<Float> calFctr(npol, 0.0f);
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| [28] | 237 |
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| [324] | 238 |
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| [822] | 239 | if (status = cWriter->write(scano, cycno, rec.asDouble("TIME"),
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| 240 | rec.asDouble("INTERVAL"),
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| 241 | rec.asString("FIELDNAME"),
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| 242 | rec.asString("SRCNAME"),
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| 243 | direction ,//
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| 244 | srcPM, srcVel, // not in scantable yet
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| 245 | ifno,
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| 246 | refFreqNew, nchan*abs(cdelt), cdelt,
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| 247 | restfreq,
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| 248 | tcal,//
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| 249 | tcaltime,//
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| 250 | rec.asFloat("AZIMUTH"),
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| 251 | rec.asFloat("ELEVATION"),
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| 252 | rec.asFloat("PARANGLE"),
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| 253 | focusAxi, focusTan, focusRot,//
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| 254 | temperature,//
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| 255 | pressure, humidity, windSpeed, windAz,//
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| 256 | rec.asInt("REFBEAM"), beamno,
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| 257 | direction,//
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| 258 | scanRate,// not in scantable
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| 259 | tSys, //
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| 260 | sigma, calFctr,// not in scantable
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| 261 | baseLin, baseSub,// not in scantable
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| 262 | specs, flags,
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| 263 | xCalFctr,//
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| 264 | xpol)
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| 265 | ) {
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| 266 | cerr << "Error writing output file." << endl;
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| 267 | return 1;
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| 268 | }
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| [470] | 269 |
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| [822] | 270 | ++cycno;
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| 271 | ++cycit;
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| [470] | 272 | }
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| [822] | 273 | ++ifno;
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| 274 | ++ifit;
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| [28] | 275 | }
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| [822] | 276 | ++beamno;
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| 277 | ++beamit;
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| [28] | 278 | }
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| [822] | 279 | ++scanno;
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| 280 | ++scanit;
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| [28] | 281 | }
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| [717] | 282 | ostringstream oss;
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| [822] | 283 | oss << "STWriter: wrote " << count << " rows to " << filename << endl;
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| [717] | 284 | pushLog(String(oss));
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| [28] | 285 | cWriter->close();
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| 286 |
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| 287 | return 0;
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| 288 | }
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| [470] | 289 |
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| [822] | 290 | void STWriter::polConversion( Matrix< Float >& specs, Matrix< Float >& flags,
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| 291 | Vector< Complex > & xpol, const Table & tab )
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| 292 | {
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| 293 | TableRow row(tab);
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| 294 | String poltype = tab.keywordSet().asString("POLTYPE");
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| 295 | if ( poltype != "linear")
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| 296 | String msg = "poltype = " + poltype + " not yet supported in output.";
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| 297 | throw(AipsError("msg"));
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| 298 | // use the first row to fill in all the "metadata"
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| 299 | const TableRecord& rec = row.record(0);
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| 300 | ROArrayColumn<Float> specCol(ctable, "SPECTRA");
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| 301 | ROArrayColumn<uChar> flagCol(ctable, "FLAGTRA");
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| 302 | uInt nchan = specCol(0).nelements();
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| 303 | uInt ncols = ( ctable.nrow()==1 ? 1: 2 );
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| 304 | specs.resize(nchan, ncols);
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| 305 | flags.resize(nchan, ncols);
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| 306 | // the linears
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| 307 | for (uInt i=0; i<ncols; ++i) {
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| 308 | specs.column(i) = specCol(i);
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| 309 | flags.column(i) = flagCol(i);
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| 310 | }
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| 311 | // now the complex if exists
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| 312 | Vector<Complex> xpol;
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| 313 | Bool hasxpol = False;
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| 314 | xpol.resize();
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| 315 | if ( ctable.nrow() == 4 ) {
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| 316 | hasxpol = True;
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| 317 | xpol.resize(nchan);
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| 318 | Vector<Float> reals, imags;
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| 319 | reals = specCol(2); imags = specCol(3);
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| 320 | for (uInt k=0; k < nchan; ++k) {
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| 321 | ` xpol[k] = Complex(reals[k], imags[k]);
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| 322 | }
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| 323 | }
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| 324 | }
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