| [2707] | 1 | // C++ Interface: STSideBandSep
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 | 2 | //
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 | 3 | // Description:
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 | 4 | //    A class to invoke sideband separation of Scantable
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 | 5 | //
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 | 6 | // Author: Kana Sugimoto <kana.sugi@nao.ac.jp>, (C) 2012
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 | 7 | //
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 | 8 | // Copyright: See COPYING file that comes with this distribution
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 | 9 | //
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 | 10 | //
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 | 11 | 
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 | 12 | // STL
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 | 13 | #include <ctype.h>
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 | 14 | 
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 | 15 | // cascore
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 | 16 | #include <casa/OS/File.h>
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 | 17 | #include <casa/Logging/LogIO.h>
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 | 18 | #include <casa/Quanta/QuantumHolder.h>
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 | 19 | 
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 | 20 | #include <measures/Measures/MFrequency.h>
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 | 21 | #include <measures/Measures/MCFrequency.h>
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 | 22 | 
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| [2711] | 23 | #include <tables/Tables/TableRow.h>
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| [2707] | 24 | #include <tables/Tables/TableRecord.h>
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 | 25 | #include <tables/Tables/TableVector.h>
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 | 26 | 
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 | 27 | // asap
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| [2794] | 28 | #include "STGrid.h"
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 | 29 | #include "STMath.h"
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 | 30 | #include "MathUtils.h"
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| [2707] | 31 | #include "STSideBandSep.h"
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 | 32 | 
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 | 33 | using namespace std ;
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 | 34 | using namespace casa ;
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 | 35 | using namespace asap ;
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 | 36 | 
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| [2794] | 37 | // #ifndef KS_DEBUG
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 | 38 | // #define KS_DEBUG
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 | 39 | // #endif
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| [2707] | 40 | 
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 | 41 | namespace asap {
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 | 42 | 
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 | 43 | // constructors
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| [2726] | 44 | STSideBandSep::STSideBandSep(const vector<string> &names)
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| [2707] | 45 | {
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| [2726] | 46 |   LogIO os(LogOrigin("STSideBandSep","STSideBandSep()", WHERE));
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 | 47 |   os << "Setting scantable names to process." << LogIO::POST ;
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 | 48 |   // Set file names
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 | 49 |   ntable_ = names.size();
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 | 50 |   infileList_.resize(ntable_);
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 | 51 |   for (unsigned int i = 0; i < ntable_; i++){
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 | 52 |     if (!checkFile(names[i], "d"))
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 | 53 |       throw( AipsError("File does not exist") );
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 | 54 |     infileList_[i] = names[i];
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 | 55 |   }
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 | 56 |   intabList_.resize(0);
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 | 57 | 
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 | 58 |   init();
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 | 59 | 
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 | 60 |   {// Summary
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 | 61 |     os << ntable_ << " files are set: [";
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 | 62 |     for (unsigned int i = 0; i < ntable_; i++) {
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 | 63 |       os << " '" << infileList_[i] << "' ";
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 | 64 |       if (i != ntable_-1) os << ",";
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 | 65 |     }
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 | 66 |     os << "] " << LogIO::POST;
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 | 67 |   }
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| [2707] | 68 | };
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 | 69 | 
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| [2726] | 70 | STSideBandSep::STSideBandSep(const vector<ScantableWrapper> &tables)
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 | 71 | {
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 | 72 |   LogIO os(LogOrigin("STSideBandSep","STSideBandSep()", WHERE));
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 | 73 |   os << "Setting list of scantables to process." << LogIO::POST ;
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 | 74 |   // Set file names
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 | 75 |   ntable_ = tables.size();
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 | 76 |   intabList_.resize(ntable_);
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 | 77 |   for (unsigned int i = 0; i < ntable_; i++){
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 | 78 |     intabList_[i] = tables[i].getCP();
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 | 79 |   }
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 | 80 |   infileList_.resize(0);
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 | 81 | 
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 | 82 |   init();
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| [2794] | 83 |   tp_ = intabList_[0]->table().tableType();
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| [2726] | 84 | 
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 | 85 |   os << ntable_ << " tables are set." << LogIO::POST;
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 | 86 | };
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 | 87 | 
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| [2707] | 88 | STSideBandSep::~STSideBandSep()
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 | 89 | {
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 | 90 | #ifdef KS_DEBUG
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 | 91 |   cout << "Destructor ~STSideBandSep()" << endl;
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 | 92 | #endif
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 | 93 | };
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 | 94 | 
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| [2726] | 95 | void STSideBandSep::init()
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 | 96 | {
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 | 97 |   // frequency setup
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| [2794] | 98 |   sigIfno_= -1;
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| [2726] | 99 |   ftol_ = -1;
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 | 100 |   solFrame_ = MFrequency::N_Types;
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 | 101 |   // shifts
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 | 102 |   initshift();
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 | 103 |   // direction tolerance
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 | 104 |   xtol_ = ytol_ = 9.69627e-6; // 2arcsec
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 | 105 |   // solution parameters
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 | 106 |   otherside_ = false;
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 | 107 |   doboth_ = false;
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 | 108 |   rejlimit_ = 0.2;
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 | 109 |   // LO1 values
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 | 110 |   lo1Freq_ = -1;
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 | 111 |   loTime_ = -1;
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 | 112 |   loDir_ = "";
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 | 113 |   // Default LO frame is TOPO
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 | 114 |   loFrame_ = MFrequency::TOPO;
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| [2794] | 115 |   // scantable storage
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 | 116 |   tp_ = Table::Memory;
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| [2726] | 117 | };
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| [2707] | 118 | 
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| [2726] | 119 | void STSideBandSep::initshift()
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| [2707] | 120 | {
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| [2726] | 121 |   // shifts
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 | 122 |   nshift_ = 0;
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 | 123 |   nchan_ = 0;
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 | 124 |   sigShift_.resize(0);
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 | 125 |   imgShift_.resize(0);
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 | 126 |   tableList_.resize(0);
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| [2707] | 127 | };
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 | 128 | 
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| [2726] | 129 | void STSideBandSep::setFrequency(const unsigned int ifno,
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 | 130 |                                  const string freqtol,
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 | 131 |                                  const string frame)
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 | 132 | {
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 | 133 |   LogIO os(LogOrigin("STSideBandSep","setFrequency()", WHERE));
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 | 134 | 
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 | 135 |   initshift();
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 | 136 | 
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 | 137 |   // IFNO
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| [2794] | 138 |   sigIfno_ = (int) ifno;
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| [2726] | 139 | 
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 | 140 |   // Frequency tolerance
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 | 141 |   Quantum<Double> qftol;
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 | 142 |   readQuantity(qftol, String(freqtol));
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 | 143 |   if (!qftol.getUnit().empty()){
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 | 144 |     // make sure the quantity is frequency
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 | 145 |     if (qftol.getFullUnit().getValue() != Unit("Hz").getValue())
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 | 146 |       throw( AipsError("Invalid quantity for frequency tolerance.") );
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 | 147 |     qftol.convert("Hz");
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 | 148 |   }
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 | 149 |   ftol_ = qftol;
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 | 150 | 
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 | 151 |   // Frequency Frame
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 | 152 |   if (!frame.empty()){
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 | 153 |     MFrequency::Types mft;
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 | 154 |     if (!MFrequency::getType(mft, frame))
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 | 155 |       throw( AipsError("Invalid frame type.") );
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 | 156 |     solFrame_ = mft;
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 | 157 |   } else {
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 | 158 |     solFrame_ = MFrequency::N_Types;
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 | 159 |   }
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 | 160 | 
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 | 161 |   {// Summary
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 | 162 |     const String sframe = ( (solFrame_ == MFrequency::N_Types) ?
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 | 163 |                             "table frame" :
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 | 164 |                             MFrequency::showType(solFrame_) );
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 | 165 |     os << "Frequency setup to search IF group: "
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 | 166 |        << "IFNO of table[0] = " << sigIfno_ 
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 | 167 |        << " , Freq tolerance = " << ftol_.getValue() << " [ "
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 | 168 |        << (ftol_.getUnit().empty() ? "channel" : ftol_.getUnit() )
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 | 169 |        << " ] (in " << sframe <<")" << LogIO::POST;
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 | 170 |   }
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 | 171 | };
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 | 172 | 
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 | 173 | 
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 | 174 | void STSideBandSep::setDirTolerance(const vector<string> dirtol)
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 | 175 | {
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 | 176 |   LogIO os(LogOrigin("STSideBandSep","setDirTolerance()", WHERE));
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 | 177 |   Quantum<Double> qcell;
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 | 178 |   if ( (dirtol.size() == 1) && !dirtol[0].empty() ) {
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 | 179 |     readQuantity(qcell, String(dirtol[0]));
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 | 180 |     if (qcell.getFullUnit().getValue() == Unit("rad").getValue())
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 | 181 |       xtol_ = ytol_ = qcell.getValue("rad");
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 | 182 |     else
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 | 183 |       throw( AipsError("Invalid unit for direction tolerance.") );
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 | 184 |   }
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 | 185 |   else if (dirtol.size() > 1) {
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 | 186 |     if ( dirtol[0].empty() && dirtol[1].empty() )
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 | 187 |       throw( AipsError("Direction tolerance is empty.") );
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 | 188 |     if ( !dirtol[0].empty() ) {
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 | 189 |       readQuantity(qcell, String(dirtol[0]));
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 | 190 |       if (qcell.getFullUnit().getValue() == Unit("rad").getValue())
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 | 191 |         xtol_ = qcell.getValue("rad");
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 | 192 |       else
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 | 193 |         throw( AipsError("Invalid unit for direction tolerance.") );
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 | 194 |     }
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 | 195 |     if ( !dirtol[1].empty() ) {
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 | 196 |       readQuantity(qcell, String(dirtol[1]));
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 | 197 |       if (qcell.getFullUnit().getValue() == Unit("rad").getValue())
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 | 198 |         ytol_ = qcell.getValue("rad");
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 | 199 |       else
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 | 200 |         throw( AipsError("Invalid unit for direction tolerance.") );
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 | 201 |     }
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 | 202 |     else {
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 | 203 |       ytol_ = xtol_;
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 | 204 |     }
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 | 205 |   }
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 | 206 |   else throw( AipsError("Invalid direction tolerance.") );
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 | 207 | 
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 | 208 |   os << "Direction tolerance: ( "
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 | 209 |      << xtol_ << " , " << ytol_ << " ) [rad]" << LogIO::POST;
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 | 210 | };
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 | 211 | 
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 | 212 | void STSideBandSep::setShift(const vector<double> &shift)
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 | 213 | {
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 | 214 |   LogIO os(LogOrigin("STSideBandSep","setShift()", WHERE));
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 | 215 |   imgShift_.resize(shift.size());
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 | 216 |   for (unsigned int i = 0; i < shift.size(); i++)
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 | 217 |     imgShift_[i] = shift[i];
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 | 218 | 
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 | 219 |   if (imgShift_.size() == 0) {
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 | 220 |     os << "Channel shifts are cleared." << LogIO::POST;
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 | 221 |   } else {
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 | 222 |     os << "Channel shifts of image sideband are set: ( ";
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 | 223 |     for (unsigned int i = 0; i < imgShift_.size(); i++) {
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 | 224 |       os << imgShift_[i];
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 | 225 |       if (i != imgShift_.size()-1) os << " , ";
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 | 226 |     }
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| [2794] | 227 |     os << " ) [channels]" << LogIO::POST;
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| [2726] | 228 |   }
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 | 229 | };
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 | 230 | 
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 | 231 | void STSideBandSep::setThreshold(const double limit)
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 | 232 | {
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 | 233 |   LogIO os(LogOrigin("STSideBandSep","setThreshold()", WHERE));
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 | 234 |   if (limit < 0)
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| [2794] | 235 |     throw( AipsError("Rejection limit should be a positive number.") );
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| [2726] | 236 | 
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 | 237 |   rejlimit_ = limit;
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| [2794] | 238 |   os << "Rejection limit is set to " << rejlimit_ << LogIO::POST;
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| [2726] | 239 | };
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 | 240 | 
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| [2794] | 241 | void STSideBandSep::separate(string outname)
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| [2707] | 242 | {
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 | 243 | #ifdef KS_DEBUG
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| [2794] | 244 |   cout << "STSideBandSep::separate" << endl;
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| [2707] | 245 | #endif
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| [2794] | 246 |   LogIO os(LogOrigin("STSideBandSep","separate()", WHERE));
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 | 247 |   if (outname.empty())
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 | 248 |     outname = "sbseparated.asap";
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| [2707] | 249 | 
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| [2794] | 250 |   // Set up a goup of IFNOs in the list of scantables within
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 | 251 |   // the frequency tolerance and make them a list.
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 | 252 |   nshift_ = setupShift();
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 | 253 |   if (nshift_ < 2)
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 | 254 |     throw( AipsError("At least 2 IFs are necessary for convolution.") );
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 | 255 |   // Grid scantable and generate output tables
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 | 256 |   ScantableWrapper gridst = gridTable();
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 | 257 |   sigTab_p = gridst.getCP();
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 | 258 |   if (doboth_)
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 | 259 |     imgTab_p = gridst.copy().getCP();
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 | 260 |   vector<unsigned int> remRowIds;
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 | 261 |   remRowIds.resize(0);
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 | 262 |   Matrix<float> specMat(nchan_, nshift_);
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 | 263 |   vector<float> sigSpec(nchan_), imgSpec(nchan_);
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 | 264 |   vector<uInt> tabIdvec;
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 | 265 | 
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 | 266 |   //Generate FFTServer
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 | 267 |   fftsf.resize(IPosition(1, nchan_), FFTEnums::REALTOCOMPLEX);
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 | 268 |   fftsi.resize(IPosition(1, nchan_), FFTEnums::COMPLEXTOREAL);
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 | 269 | 
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 | 270 |   /// Loop over sigTab_p and separate sideband
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 | 271 |   for (int irow = 0; irow < sigTab_p->nrow(); irow++){
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 | 272 |     tabIdvec.resize(0);
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 | 273 |     const int polId = sigTab_p->getPol(irow);
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 | 274 |     const int beamId = sigTab_p->getBeam(irow);
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 | 275 |     const vector<double> dir = sigTab_p->getDirectionVector(irow);
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 | 276 |     // Get a set of spectra to solve
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 | 277 |     if (!getSpectraToSolve(polId, beamId, dir[0], dir[1],
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 | 278 |                            specMat, tabIdvec)){
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 | 279 |       remRowIds.push_back(irow);
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 | 280 | #ifdef KS_DEBUG
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 | 281 |       cout << "no matching row found. skipping row = " << irow << endl;
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 | 282 | #endif
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 | 283 |       continue;
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 | 284 |     }
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 | 285 |     // Solve signal sideband
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 | 286 |     sigSpec = solve(specMat, tabIdvec, true);
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 | 287 |     sigTab_p->setSpectrum(sigSpec, irow);
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 | 288 | 
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 | 289 |     // Solve image sideband
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 | 290 |     if (doboth_) {
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 | 291 |       imgSpec = solve(specMat, tabIdvec, false);
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 | 292 |       imgTab_p->setSpectrum(imgSpec, irow);
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 | 293 |     }
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 | 294 |   } // end of row loop
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 | 295 | 
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 | 296 |   // Remove or flag rows without relevant data from gridded tables
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 | 297 |   if (remRowIds.size() > 0) {
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 | 298 |     const size_t nrem = remRowIds.size();
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 | 299 |     if ( sigTab_p->table().canRemoveRow() ) {
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 | 300 |       sigTab_p->table().removeRow(remRowIds);
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 | 301 |       os << "Removing " << nrem << " rows from the signal band table"
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 | 302 |          << LogIO::POST;
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 | 303 |     } else {
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 | 304 |       sigTab_p->flagRow(remRowIds, false);
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 | 305 |       os << "Cannot remove rows from the signal band table. Flagging "
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 | 306 |          << nrem << " rows" << LogIO::POST;
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 | 307 |     }
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 | 308 | 
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 | 309 |     if (doboth_) {
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 | 310 |       if ( imgTab_p->table().canRemoveRow() ) {
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 | 311 |         imgTab_p->table().removeRow(remRowIds);
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 | 312 |         os << "Removing " << nrem << " rows from the image band table"
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 | 313 |            << LogIO::POST;
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 | 314 |       } else {
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 | 315 |         imgTab_p->flagRow(remRowIds, false);
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 | 316 |         os << "Cannot remove rows from the image band table. Flagging "
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 | 317 |            << nrem << " rows" << LogIO::POST;
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 | 318 |       }
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 | 319 |     }
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 | 320 |   }
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 | 321 | 
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 | 322 |   // Finally, save tables on disk
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 | 323 |   if (outname.size() ==0)
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 | 324 |     outname = "sbseparated.asap";
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 | 325 |   const string sigName = outname + ".signalband";
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 | 326 |   os << "Saving SIGNAL sideband table: " << sigName << LogIO::POST;
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 | 327 |   sigTab_p->makePersistent(sigName);
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 | 328 |   if (doboth_) {
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 | 329 |     solveImageFrequency();
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 | 330 |     const string imgName = outname + ".imageband";
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 | 331 |     os << "Saving IMAGE sideband table: " << sigName << LogIO::POST;
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 | 332 |     imgTab_p->makePersistent(imgName);
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 | 333 |   }
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 | 334 | 
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| [2707] | 335 | };
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 | 336 | 
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| [2794] | 337 | unsigned int STSideBandSep::setupShift()
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 | 338 | {
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 | 339 |   LogIO os(LogOrigin("STSideBandSep","setupShift()", WHERE));
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 | 340 |   if (infileList_.size() == 0 && intabList_.size() == 0)
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 | 341 |     throw( AipsError("No scantable has been set. Set a list of scantables first.") );
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 | 342 | 
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 | 343 |   const bool byname = (intabList_.size() == 0);
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 | 344 |   // Make sure sigIfno_ exists in the first table.
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 | 345 |   CountedPtr<Scantable> stab;
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 | 346 |   vector<string> coordsav;
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 | 347 |   vector<string> coordtmp(3);
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 | 348 |   os << "Checking IFNO in the first table." << LogIO::POST;
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 | 349 |   if (byname) {
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 | 350 |     if (!checkFile(infileList_[0], "d"))
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 | 351 |       os << LogIO::SEVERE << "Could not find scantable '" << infileList_[0]
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 | 352 |          << "'" << LogIO::EXCEPTION;
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 | 353 |     stab = CountedPtr<Scantable>(new Scantable(infileList_[0]));
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 | 354 |   } else {
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 | 355 |     stab = intabList_[0];
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 | 356 |   }
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 | 357 |   if (sigIfno_ < 0) {
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 | 358 |     sigIfno_ = (int) stab->getIF(0);
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 | 359 |     os << "IFNO to process has not been set. Using the first IF = "
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 | 360 |        << sigIfno_ << LogIO::POST;
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 | 361 |   }
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 | 362 | 
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 | 363 |   unsigned int basench;
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 | 364 |   double basech0, baseinc, ftolval, inctolval;
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 | 365 |   coordsav = stab->getCoordInfo();
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 | 366 |   const string stfframe = coordsav[1];
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 | 367 |   coordtmp[0] = "Hz";
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 | 368 |   coordtmp[1] = ( (solFrame_ == MFrequency::N_Types) ?
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 | 369 |                   stfframe :
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 | 370 |                   MFrequency::showType(solFrame_) );
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 | 371 |   coordtmp[2] = coordsav[2];
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 | 372 |   stab->setCoordInfo(coordtmp);
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 | 373 |   if (!getFreqInfo(stab, (unsigned int) sigIfno_, basech0, baseinc, basench)) {
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 | 374 |     os << LogIO::SEVERE << "No data with IFNO=" << sigIfno_
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 | 375 |        << " found in the first table." << LogIO::EXCEPTION;
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 | 376 |   }
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 | 377 |   else {
 | 
|---|
 | 378 |     os << "Found IFNO = " << sigIfno_
 | 
|---|
 | 379 |        << " in the first table." << LogIO::POST;
 | 
|---|
 | 380 |   }
 | 
|---|
 | 381 |   if (ftol_.getUnit().empty()) {
 | 
|---|
 | 382 |     // tolerance in unit of channels
 | 
|---|
 | 383 |     ftolval = ftol_.getValue() * baseinc;
 | 
|---|
 | 384 |   }
 | 
|---|
 | 385 |   else {
 | 
|---|
 | 386 |     ftolval = ftol_.getValue("Hz");
 | 
|---|
 | 387 |   }
 | 
|---|
 | 388 |   inctolval = abs(baseinc/(double) basench);
 | 
|---|
 | 389 |   const string poltype0 = stab->getPolType();
 | 
|---|
 | 390 | 
 | 
|---|
 | 391 |   // Initialize shift values
 | 
|---|
 | 392 |   initshift();
 | 
|---|
 | 393 | 
 | 
|---|
 | 394 |   const bool setImg = ( doboth_ && (imgShift_.size() == 0) );
 | 
|---|
 | 395 |   // Select IFs
 | 
|---|
 | 396 |   for (unsigned int itab = 0; itab < ntable_; itab++ ){
 | 
|---|
 | 397 |     os << "Table " << itab << LogIO::POST;
 | 
|---|
 | 398 |     if (itab > 0) {
 | 
|---|
 | 399 |       if (byname) {
 | 
|---|
 | 400 |         if (!checkFile(infileList_[itab], "d"))
 | 
|---|
 | 401 |           os << LogIO::SEVERE << "Could not find scantable '"
 | 
|---|
 | 402 |              << infileList_[itab] << "'" << LogIO::EXCEPTION;
 | 
|---|
 | 403 |         stab = CountedPtr<Scantable>(new Scantable(infileList_[itab]));
 | 
|---|
 | 404 |       } else {
 | 
|---|
 | 405 |         stab = intabList_[itab];
 | 
|---|
 | 406 |       }
 | 
|---|
 | 407 |       //POLTYPE should be the same.
 | 
|---|
 | 408 |       if (stab->getPolType() != poltype0 ) {
 | 
|---|
 | 409 |         os << LogIO::WARN << "POLTYPE differs from the first table."
 | 
|---|
 | 410 |            << " Skipping the table" << LogIO::POST;
 | 
|---|
 | 411 |         continue;
 | 
|---|
 | 412 |       }
 | 
|---|
 | 413 |       // Multi beam data may not handled properly
 | 
|---|
 | 414 |       if (stab->nbeam() > 1)
 | 
|---|
 | 415 |         os <<  LogIO::WARN << "Table contains multiple beams. "
 | 
|---|
 | 416 |            << "It may not be handled properly."  << LogIO::POST;
 | 
|---|
 | 417 | 
 | 
|---|
 | 418 |       coordsav = stab->getCoordInfo();
 | 
|---|
 | 419 |       coordtmp[2] = coordsav[2];
 | 
|---|
 | 420 |       stab->setCoordInfo(coordtmp);
 | 
|---|
 | 421 |     }
 | 
|---|
 | 422 |     bool selected = false;
 | 
|---|
 | 423 |     vector<uint> ifnos = stab->getIFNos();
 | 
|---|
 | 424 |     vector<uint>::iterator iter;
 | 
|---|
 | 425 |     const STSelector& basesel = stab->getSelection();
 | 
|---|
 | 426 |     for (iter = ifnos.begin(); iter != ifnos.end(); iter++){
 | 
|---|
 | 427 |       unsigned int nch;
 | 
|---|
 | 428 |       double freq0, incr;
 | 
|---|
 | 429 |       if ( getFreqInfo(stab, *iter, freq0, incr, nch) ){
 | 
|---|
 | 430 |         if ( (nch == basench) && (abs(freq0-basech0) < ftolval)
 | 
|---|
 | 431 |              && (abs(incr-baseinc) < inctolval) ){
 | 
|---|
 | 432 |           //Found
 | 
|---|
 | 433 |           STSelector sel(basesel);
 | 
|---|
 | 434 |           sel.setIFs(vector<int>(1,(int) *iter));
 | 
|---|
 | 435 |           stab->setSelection(sel);
 | 
|---|
 | 436 |           CountedPtr<Scantable> seltab = ( new Scantable(*stab, false) );
 | 
|---|
 | 437 |           stab->setSelection(basesel);
 | 
|---|
 | 438 |           seltab->setCoordInfo(coordsav);
 | 
|---|
 | 439 |           const double chShift = (freq0 - basech0) / baseinc;
 | 
|---|
 | 440 |           tableList_.push_back(seltab);
 | 
|---|
| [2808] | 441 |           sigShift_.push_back(-chShift);
 | 
|---|
| [2794] | 442 |           if (setImg)
 | 
|---|
| [2808] | 443 |             imgShift_.push_back(chShift);
 | 
|---|
| [2794] | 444 | 
 | 
|---|
 | 445 |           selected = true;
 | 
|---|
 | 446 |           os << "- IF" << *iter << " selected: sideband shift = "
 | 
|---|
 | 447 |              << chShift << " channels" << LogIO::POST;
 | 
|---|
 | 448 |         }
 | 
|---|
 | 449 |       }
 | 
|---|
 | 450 |     } // ifno loop
 | 
|---|
 | 451 |     stab->setCoordInfo(coordsav);
 | 
|---|
 | 452 |     if (!selected)
 | 
|---|
 | 453 |       os << LogIO::WARN << "No data selected in Table "
 | 
|---|
 | 454 |          << itab << LogIO::POST;
 | 
|---|
 | 455 |   } // table loop
 | 
|---|
 | 456 |   nchan_ = basench;
 | 
|---|
 | 457 | 
 | 
|---|
 | 458 |   os << "Total number of IFs selected = " << tableList_.size()
 | 
|---|
 | 459 |      << LogIO::POST;
 | 
|---|
 | 460 |   if ( setImg && (sigShift_.size() != imgShift_.size()) ){
 | 
|---|
 | 461 |       os << LogIO::SEVERE
 | 
|---|
 | 462 |          << "User defined channel shift of image sideband has "
 | 
|---|
 | 463 |          << imgShift_.size()
 | 
|---|
 | 464 |          << " elements, while selected IFNOs are " << sigShift_.size()
 | 
|---|
 | 465 |          << "\nThe frequency tolerance (freqtol) may be too small."
 | 
|---|
 | 466 |          << LogIO::EXCEPTION;
 | 
|---|
 | 467 |   }
 | 
|---|
 | 468 | 
 | 
|---|
 | 469 |   return tableList_.size();
 | 
|---|
 | 470 | };
 | 
|---|
 | 471 | 
 | 
|---|
 | 472 | bool STSideBandSep::getFreqInfo(const CountedPtr<Scantable> &stab,
 | 
|---|
 | 473 |                                 const unsigned int &ifno,
 | 
|---|
 | 474 |                                 double &freq0, double &incr,
 | 
|---|
 | 475 |                                 unsigned int &nchan)
 | 
|---|
 | 476 | {
 | 
|---|
 | 477 |     vector<uint> ifnos = stab->getIFNos();
 | 
|---|
 | 478 |     bool found = false;
 | 
|---|
 | 479 |     vector<uint>::iterator iter;
 | 
|---|
 | 480 |     for (iter = ifnos.begin(); iter != ifnos.end(); iter++){
 | 
|---|
 | 481 |       if (*iter == ifno) {
 | 
|---|
 | 482 |         found = true;
 | 
|---|
 | 483 |         break;
 | 
|---|
 | 484 |       }
 | 
|---|
 | 485 |     }
 | 
|---|
 | 486 |     if (!found)
 | 
|---|
 | 487 |       return false;
 | 
|---|
 | 488 | 
 | 
|---|
 | 489 |     const STSelector& basesel = stab->getSelection();
 | 
|---|
 | 490 |     STSelector sel(basesel);
 | 
|---|
 | 491 |     sel.setIFs(vector<int>(1,(int) ifno));
 | 
|---|
 | 492 |     stab->setSelection(sel);
 | 
|---|
 | 493 |     vector<double> freqs;
 | 
|---|
 | 494 |     freqs = stab->getAbcissa(0);
 | 
|---|
 | 495 |     freq0 = freqs[0];
 | 
|---|
 | 496 |     incr = freqs[1] - freqs[0];
 | 
|---|
 | 497 |     nchan = freqs.size();
 | 
|---|
 | 498 |     stab->setSelection(basesel);
 | 
|---|
 | 499 |     return true;
 | 
|---|
 | 500 | };
 | 
|---|
 | 501 | 
 | 
|---|
 | 502 | ScantableWrapper STSideBandSep::gridTable()
 | 
|---|
 | 503 | {
 | 
|---|
 | 504 |   LogIO os(LogOrigin("STSideBandSep","gridTable()", WHERE));
 | 
|---|
 | 505 |   if (tableList_.size() == 0)
 | 
|---|
 | 506 |     throw( AipsError("Internal error. No scantable has been set to grid.") );
 | 
|---|
 | 507 |   Double xmin, xmax, ymin, ymax;
 | 
|---|
 | 508 |   mapExtent(tableList_, xmin, xmax, ymin, ymax);
 | 
|---|
 | 509 |   const Double centx = 0.5 * (xmin + xmax);
 | 
|---|
 | 510 |   const Double centy = 0.5 * (ymin + ymax);
 | 
|---|
 | 511 |   const int nx = max(1, (int) ceil( (xmax - xmin) * cos(centy) /xtol_ ) );
 | 
|---|
 | 512 |   const int ny = max(1, (int) ceil( (ymax - ymin) / ytol_ ) );
 | 
|---|
 | 513 | 
 | 
|---|
 | 514 |   string scellx, scelly;
 | 
|---|
 | 515 |   {
 | 
|---|
 | 516 |     ostringstream oss;
 | 
|---|
 | 517 |     oss << xtol_ << "rad" ;
 | 
|---|
 | 518 |     scellx = oss.str();
 | 
|---|
 | 519 |   }
 | 
|---|
 | 520 |   {
 | 
|---|
 | 521 |     ostringstream oss;
 | 
|---|
 | 522 |     oss << ytol_ << "rad" ;
 | 
|---|
 | 523 |     scelly = oss.str();
 | 
|---|
 | 524 |   }
 | 
|---|
 | 525 | 
 | 
|---|
 | 526 |   ScantableWrapper stab0;
 | 
|---|
 | 527 |   if (intabList_.size() > 0)
 | 
|---|
 | 528 |     stab0 = ScantableWrapper(intabList_[0]);
 | 
|---|
 | 529 |   else
 | 
|---|
 | 530 |     stab0 = ScantableWrapper(infileList_[0]);
 | 
|---|
 | 531 | 
 | 
|---|
 | 532 |   string scenter;
 | 
|---|
 | 533 |   {
 | 
|---|
 | 534 |     ostringstream oss;
 | 
|---|
 | 535 |     oss << stab0.getCP()->getDirectionRefString() << " "
 | 
|---|
 | 536 |         << centx << "rad" << " " << centy << "rad";
 | 
|---|
 | 537 |     scenter = oss.str();
 | 
|---|
 | 538 |   } 
 | 
|---|
 | 539 |   
 | 
|---|
 | 540 |   STGrid2 gridder = STGrid2(stab0);
 | 
|---|
 | 541 |   gridder.setIF(sigIfno_);
 | 
|---|
 | 542 |   gridder.defineImage(nx, ny, scellx, scelly, scenter);
 | 
|---|
| [2835] | 543 |   //  gridder.setFunc("box", 1); // convsupport=1 fails
 | 
|---|
 | 544 |   gridder.setFunc("box");
 | 
|---|
| [2794] | 545 |   gridder.setWeight("uniform");
 | 
|---|
 | 546 | #ifdef KS_DEBUG
 | 
|---|
 | 547 |   cout << "Grid parameter summary: " << endl;
 | 
|---|
 | 548 |   cout << "- IF = " << sigIfno_ << endl;
 | 
|---|
| [2836] | 549 |   cout << "- center = " << scenter << "\n"
 | 
|---|
| [2794] | 550 |        << "- npix = (" << nx << ", " << ny << ")\n"
 | 
|---|
| [2836] | 551 |        << "- cell = (" << scellx << ", " << scelly << ")" << endl;
 | 
|---|
| [2794] | 552 | #endif
 | 
|---|
 | 553 |   gridder.grid();
 | 
|---|
 | 554 |   const int itp = (tp_ == Table::Memory ? 0 : 1);
 | 
|---|
 | 555 |   ScantableWrapper gtab = gridder.getResultAsScantable(itp);
 | 
|---|
 | 556 |   return gtab;
 | 
|---|
 | 557 | };
 | 
|---|
 | 558 | 
 | 
|---|
 | 559 | void STSideBandSep::mapExtent(vector< CountedPtr<Scantable> > &tablist,
 | 
|---|
 | 560 |                               Double &xmin, Double &xmax, 
 | 
|---|
 | 561 |                               Double &ymin, Double &ymax)
 | 
|---|
 | 562 | {
 | 
|---|
 | 563 |   ROArrayColumn<Double> dirCol_;
 | 
|---|
 | 564 |   dirCol_.attach( tablist[0]->table(), "DIRECTION" );
 | 
|---|
 | 565 |   Matrix<Double> direction = dirCol_.getColumn();
 | 
|---|
 | 566 |   Vector<Double> ra( direction.row(0) );
 | 
|---|
 | 567 |   mathutil::rotateRA(ra);
 | 
|---|
 | 568 |   minMax( xmin, xmax, ra );
 | 
|---|
 | 569 |   minMax( ymin, ymax, direction.row(1) );
 | 
|---|
 | 570 |   Double amin, amax, bmin, bmax;
 | 
|---|
 | 571 |   const uInt ntab = tablist.size();
 | 
|---|
 | 572 |   for ( uInt i = 1 ; i < ntab ; i++ ) {
 | 
|---|
 | 573 |     dirCol_.attach( tablist[i]->table(), "DIRECTION" );
 | 
|---|
 | 574 |     direction.assign( dirCol_.getColumn() );
 | 
|---|
 | 575 |     ra.assign( direction.row(0) );
 | 
|---|
 | 576 |     mathutil::rotateRA(ra);
 | 
|---|
 | 577 |     minMax( amin, amax, ra );
 | 
|---|
 | 578 |     minMax( bmin, bmax, direction.row(1) );
 | 
|---|
 | 579 |     xmin = min(xmin, amin);
 | 
|---|
 | 580 |     xmax = max(xmax, amax);
 | 
|---|
 | 581 |     ymin = min(ymin, bmin);
 | 
|---|
 | 582 |     ymax = max(ymax, bmax);
 | 
|---|
 | 583 |   }
 | 
|---|
 | 584 | };
 | 
|---|
 | 585 | 
 | 
|---|
 | 586 | bool STSideBandSep::getSpectraToSolve(const int polId, const int beamId,
 | 
|---|
 | 587 |                                       const double dirX, const double dirY,
 | 
|---|
 | 588 |                                       Matrix<float> &specMat, vector<uInt> &tabIdvec)
 | 
|---|
 | 589 | {
 | 
|---|
 | 590 |   LogIO os(LogOrigin("STSideBandSep","getSpectraToSolve()", WHERE));
 | 
|---|
 | 591 | 
 | 
|---|
 | 592 |   tabIdvec.resize(0);
 | 
|---|
 | 593 |   specMat.resize(nchan_, nshift_);
 | 
|---|
 | 594 |   Vector<float> spec;
 | 
|---|
 | 595 |   uInt nspec = 0;
 | 
|---|
 | 596 |   STMath stm(false); // insitu has no effect for average.
 | 
|---|
 | 597 |   for (uInt itab = 0 ; itab < nshift_ ; itab++) {
 | 
|---|
 | 598 |     CountedPtr<Scantable> currtab_p = tableList_[itab];
 | 
|---|
 | 599 |     // Selection by POLNO and BEAMNO
 | 
|---|
 | 600 |     const STSelector& basesel = currtab_p->getSelection();
 | 
|---|
 | 601 |     STSelector sel(basesel);
 | 
|---|
 | 602 |     sel.setPolarizations(vector<int>(1, polId));
 | 
|---|
 | 603 |     sel.setBeams(vector<int>(1, beamId));
 | 
|---|
 | 604 |     try {
 | 
|---|
 | 605 |       currtab_p->setSelection(sel);
 | 
|---|
 | 606 |     } catch (...) {
 | 
|---|
 | 607 | #ifdef KS_DEBUG
 | 
|---|
 | 608 |       cout << "Table " << itab << " - No spectrum found. skipping the table."
 | 
|---|
 | 609 |            << endl;
 | 
|---|
 | 610 | #endif
 | 
|---|
 | 611 |       continue;
 | 
|---|
 | 612 |     }
 | 
|---|
 | 613 |     // Selection by direction;
 | 
|---|
 | 614 |     vector<int> selrow(0);
 | 
|---|
 | 615 |     vector<double> currDir(2, 0.);
 | 
|---|
 | 616 |     const int nselrow = currtab_p->nrow();
 | 
|---|
 | 617 |     for (int irow = 0 ; irow < nselrow ; irow++) {
 | 
|---|
 | 618 |       currDir = currtab_p->getDirectionVector(irow);
 | 
|---|
 | 619 |       if ( (abs(currDir[0]-dirX) > xtol_) ||
 | 
|---|
 | 620 |            (abs(currDir[1]-dirY) > ytol_) )
 | 
|---|
 | 621 |         continue;
 | 
|---|
 | 622 |       // within direction tolerance
 | 
|---|
 | 623 |       selrow.push_back(irow);
 | 
|---|
 | 624 |     } // end of row loop
 | 
|---|
 | 625 | 
 | 
|---|
 | 626 |     if (selrow.size() < 1) {
 | 
|---|
 | 627 |       currtab_p->setSelection(basesel);
 | 
|---|
 | 628 | 
 | 
|---|
 | 629 | #ifdef KS_DEBUG
 | 
|---|
 | 630 |       cout << "Table " << itab << " - No spectrum found. skipping the table."
 | 
|---|
 | 631 |            << endl;
 | 
|---|
 | 632 | #endif
 | 
|---|
 | 633 | 
 | 
|---|
 | 634 |       continue;
 | 
|---|
 | 635 |     }
 | 
|---|
 | 636 | 
 | 
|---|
 | 637 |     // At least a spectrum is selected in this table
 | 
|---|
 | 638 |     CountedPtr<Scantable> seltab_p = ( new Scantable(*currtab_p, false) );
 | 
|---|
 | 639 |     currtab_p->setSelection(basesel);
 | 
|---|
 | 640 |     STSelector sel2(seltab_p->getSelection());
 | 
|---|
 | 641 |     sel2.setRows(selrow);
 | 
|---|
 | 642 |     seltab_p->setSelection(sel2);
 | 
|---|
 | 643 |     CountedPtr<Scantable> avetab_p;
 | 
|---|
 | 644 |     if (seltab_p->nrow() > 1) {
 | 
|---|
| [2836] | 645 |       // STMath::average also merges FLAGTRA and FLAGROW
 | 
|---|
| [2794] | 646 |       avetab_p = stm.average(vector< CountedPtr<Scantable> >(1, seltab_p),
 | 
|---|
 | 647 |                              vector<bool>(), "TINTSYS", "NONE");
 | 
|---|
 | 648 | #ifdef KS_DEBUG
 | 
|---|
 | 649 |       cout << "Table " << itab << " - more than a spectrum is selected. averaging rows..."
 | 
|---|
 | 650 |            << endl;
 | 
|---|
 | 651 | #endif
 | 
|---|
 | 652 |       if (avetab_p->nrow() > 1)
 | 
|---|
 | 653 |         throw( AipsError("Averaged table has more than a row. Somethigs went wrong.") );
 | 
|---|
 | 654 |     } else {
 | 
|---|
 | 655 |       avetab_p = seltab_p;
 | 
|---|
 | 656 |     }
 | 
|---|
| [2836] | 657 |     // Check FLAGTRA and FLAGROW if there's any valid channel in the spectrum
 | 
|---|
 | 658 |     if (avetab_p->getFlagRow(0) || avetab_p->isAllChannelsFlagged(0)) {
 | 
|---|
 | 659 | #ifdef KS_DEBUG
 | 
|---|
 | 660 |       cout << "Table " << itab << " - All data are flagged. skipping the table."
 | 
|---|
 | 661 |            << endl;
 | 
|---|
 | 662 | #endif
 | 
|---|
 | 663 |       continue;
 | 
|---|
 | 664 |     }
 | 
|---|
 | 665 |     // Interpolate flagged channels of the spectrum.
 | 
|---|
 | 666 |     Vector<Float> tmpSpec = avetab_p->getSpectrum(0);
 | 
|---|
 | 667 |     vector<bool> mask = avetab_p->getMask(0);
 | 
|---|
 | 668 |     mathutil::doZeroOrderInterpolation(tmpSpec, mask);
 | 
|---|
| [2794] | 669 |     spec.reference(specMat.column(nspec));
 | 
|---|
| [2836] | 670 |     spec = tmpSpec;
 | 
|---|
| [2794] | 671 |     tabIdvec.push_back((uInt) itab);
 | 
|---|
 | 672 |     nspec++;
 | 
|---|
 | 673 |   } // end of table loop
 | 
|---|
| [2836] | 674 |   // Check the number of selected spectra and resize matrix.
 | 
|---|
| [2794] | 675 |   if (nspec != nshift_){
 | 
|---|
 | 676 |     //shiftSpecmat.resize(nchan_, nspec, true);
 | 
|---|
| [2836] | 677 |     specMat.resize(nchan_, nspec, true);
 | 
|---|
| [2794] | 678 | #ifdef KS_DEBUG
 | 
|---|
 | 679 |       cout << "Could not find corresponding rows in some tables."
 | 
|---|
 | 680 |            << endl;
 | 
|---|
 | 681 |       cout << "Number of spectra selected = " << nspec << endl;
 | 
|---|
 | 682 | #endif
 | 
|---|
 | 683 |   }
 | 
|---|
 | 684 |   if (nspec < 2) {
 | 
|---|
 | 685 | #ifdef KS_DEBUG
 | 
|---|
 | 686 |       cout << "At least 2 spectra are necessary for convolution"
 | 
|---|
 | 687 |            << endl;
 | 
|---|
 | 688 | #endif
 | 
|---|
 | 689 |       return false;
 | 
|---|
 | 690 |   }
 | 
|---|
 | 691 |   return true;
 | 
|---|
 | 692 | };
 | 
|---|
 | 693 | 
 | 
|---|
 | 694 | vector<float> STSideBandSep::solve(const Matrix<float> &specmat,
 | 
|---|
 | 695 |                                    const vector<uInt> &tabIdvec,
 | 
|---|
 | 696 |                                    const bool signal)
 | 
|---|
 | 697 | {
 | 
|---|
 | 698 |   LogIO os(LogOrigin("STSideBandSep","solve()", WHERE));
 | 
|---|
 | 699 |   if (tabIdvec.size() == 0)
 | 
|---|
 | 700 |     throw(AipsError("Internal error. Table index is not defined."));
 | 
|---|
 | 701 |   if (specmat.ncolumn() != tabIdvec.size())
 | 
|---|
 | 702 |     throw(AipsError("Internal error. The row number of input matrix is not conformant."));
 | 
|---|
 | 703 |   if (specmat.nrow() != nchan_)
 | 
|---|
 | 704 |     throw(AipsError("Internal error. The channel size of input matrix is not conformant."));
 | 
|---|
 | 705 |   
 | 
|---|
 | 706 | 
 | 
|---|
 | 707 | #ifdef KS_DEBUG
 | 
|---|
 | 708 |   cout << "Solving " << (signal ? "SIGNAL" : "IMAGE") << " sideband."
 | 
|---|
 | 709 |      << endl;
 | 
|---|
 | 710 | #endif
 | 
|---|
 | 711 | 
 | 
|---|
 | 712 |   const size_t nspec = tabIdvec.size();
 | 
|---|
 | 713 |   vector<double> *thisShift, *otherShift;
 | 
|---|
 | 714 |   if (signal == otherside_) {
 | 
|---|
 | 715 |     // (solve signal && solveother = T) OR (solve image && solveother = F)
 | 
|---|
 | 716 |     thisShift = &imgShift_;
 | 
|---|
 | 717 |     otherShift = &sigShift_;
 | 
|---|
 | 718 | #ifdef KS_DEBUG
 | 
|---|
 | 719 |     cout << "Image sideband will be deconvolved." << endl;
 | 
|---|
 | 720 | #endif
 | 
|---|
 | 721 |   } else {
 | 
|---|
 | 722 |     // (solve signal && solveother = F) OR (solve image && solveother = T)
 | 
|---|
 | 723 |     thisShift =  &sigShift_;
 | 
|---|
 | 724 |     otherShift = &imgShift_; 
 | 
|---|
 | 725 | #ifdef KS_DEBUG
 | 
|---|
 | 726 |     cout << "Signal sideband will be deconvolved." << endl;
 | 
|---|
 | 727 | #endif
 | 
|---|
 | 728 |  }
 | 
|---|
 | 729 | 
 | 
|---|
 | 730 |   vector<double> spshift(nspec);
 | 
|---|
 | 731 |   Matrix<float> shiftSpecmat(nchan_, nspec, 0.);
 | 
|---|
 | 732 |   double tempshift;
 | 
|---|
 | 733 |   Vector<float> shiftspvec;
 | 
|---|
 | 734 |   for (uInt i = 0 ; i < nspec; i++) {
 | 
|---|
 | 735 |     spshift[i] = otherShift->at(i) - thisShift->at(i);
 | 
|---|
 | 736 |     tempshift = - thisShift->at(i);
 | 
|---|
 | 737 |     shiftspvec.reference(shiftSpecmat.column(i));
 | 
|---|
 | 738 |     shiftSpectrum(specmat.column(i), tempshift, shiftspvec);
 | 
|---|
 | 739 |   }
 | 
|---|
 | 740 | 
 | 
|---|
 | 741 |   Matrix<float> convmat(nchan_, nspec*(nspec-1)/2, 0.);
 | 
|---|
 | 742 |   vector<float> thisvec(nchan_, 0.);
 | 
|---|
 | 743 | 
 | 
|---|
 | 744 |   float minval, maxval;
 | 
|---|
 | 745 |   minMax(minval, maxval, shiftSpecmat);
 | 
|---|
 | 746 | #ifdef KS_DEBUG
 | 
|---|
 | 747 |   cout << "Max/Min of input Matrix = (max: " << maxval << ", min: " << minval << ")" << endl;
 | 
|---|
 | 748 | #endif
 | 
|---|
 | 749 | 
 | 
|---|
 | 750 | #ifdef KS_DEBUG
 | 
|---|
 | 751 |   cout << "starting deconvolution" << endl;
 | 
|---|
 | 752 | #endif
 | 
|---|
 | 753 |   deconvolve(shiftSpecmat, spshift, rejlimit_, convmat);
 | 
|---|
 | 754 | #ifdef KS_DEBUG
 | 
|---|
 | 755 |   cout << "finished deconvolution" << endl;
 | 
|---|
 | 756 | #endif
 | 
|---|
 | 757 | 
 | 
|---|
 | 758 |   minMax(minval, maxval, convmat);
 | 
|---|
 | 759 | #ifdef KS_DEBUG
 | 
|---|
 | 760 |   cout << "Max/Min of output Matrix = (max: " << maxval << ", min: " << minval << ")" << endl;
 | 
|---|
 | 761 | #endif
 | 
|---|
 | 762 | 
 | 
|---|
 | 763 |   aggregateMat(convmat, thisvec);
 | 
|---|
 | 764 | 
 | 
|---|
 | 765 |   if (!otherside_) return thisvec;
 | 
|---|
 | 766 | 
 | 
|---|
 | 767 |   // subtract from the other side band.
 | 
|---|
 | 768 |   vector<float> othervec(nchan_, 0.);
 | 
|---|
 | 769 |   subtractFromOther(shiftSpecmat, thisvec, spshift, othervec);
 | 
|---|
 | 770 |   return othervec;
 | 
|---|
 | 771 | };
 | 
|---|
 | 772 | 
 | 
|---|
 | 773 | 
 | 
|---|
 | 774 | void STSideBandSep::shiftSpectrum(const Vector<float> &invec,
 | 
|---|
 | 775 |                                   double shift,
 | 
|---|
 | 776 |                                   Vector<float> &outvec)
 | 
|---|
 | 777 | {
 | 
|---|
 | 778 |   LogIO os(LogOrigin("STSideBandSep","shiftSpectrum()", WHERE));
 | 
|---|
 | 779 |   if (invec.size() != nchan_)
 | 
|---|
 | 780 |     throw(AipsError("Internal error. The length of input vector differs from nchan_"));
 | 
|---|
 | 781 |   if (outvec.size() != nchan_)
 | 
|---|
 | 782 |     throw(AipsError("Internal error. The length of output vector differs from nchan_"));
 | 
|---|
 | 783 | 
 | 
|---|
 | 784 | #ifdef KS_DEBUG
 | 
|---|
 | 785 |   cout << "Start shifting spectrum for " << shift << "channels" << endl;
 | 
|---|
 | 786 | #endif
 | 
|---|
 | 787 | 
 | 
|---|
 | 788 |   // tweak shift to be in 0 ~ nchan_-1
 | 
|---|
 | 789 |   if ( fabs(shift) > nchan_ ) shift = fmod(shift, nchan_);
 | 
|---|
 | 790 |   if (shift < 0.) shift += nchan_;
 | 
|---|
 | 791 |   double rweight = fmod(shift, 1.);
 | 
|---|
 | 792 |   if (rweight < 0.) rweight += 1.;
 | 
|---|
 | 793 |   double lweight = 1. - rweight;
 | 
|---|
 | 794 |   uInt lchan, rchan;
 | 
|---|
 | 795 | 
 | 
|---|
 | 796 |   outvec = 0;
 | 
|---|
 | 797 |   for (uInt i = 0 ; i < nchan_ ; i++) {
 | 
|---|
 | 798 |     lchan = uInt( floor( fmod( (i + shift), nchan_ ) ) );
 | 
|---|
 | 799 |     if (lchan < 0.) lchan += nchan_;
 | 
|---|
 | 800 |     rchan = ( (lchan + 1) % nchan_ );
 | 
|---|
 | 801 |     outvec(lchan) += invec(i) * lweight;
 | 
|---|
 | 802 |     outvec(rchan) += invec(i) * rweight;
 | 
|---|
 | 803 |   }
 | 
|---|
 | 804 | };
 | 
|---|
 | 805 | 
 | 
|---|
 | 806 | void STSideBandSep::deconvolve(Matrix<float> &specmat,
 | 
|---|
 | 807 |                                const vector<double> shiftvec,
 | 
|---|
 | 808 |                                const double threshold,
 | 
|---|
 | 809 |                                Matrix<float> &outmat)
 | 
|---|
 | 810 | {
 | 
|---|
 | 811 |   LogIO os(LogOrigin("STSideBandSep","deconvolve()", WHERE));
 | 
|---|
 | 812 |   if (specmat.nrow() != nchan_)
 | 
|---|
 | 813 |     throw(AipsError("Internal error. The length of input matrix differs from nchan_"));
 | 
|---|
 | 814 |   if (specmat.ncolumn() != shiftvec.size())
 | 
|---|
 | 815 |     throw(AipsError("Internal error. The number of input shifts and spectrum  differs."));
 | 
|---|
 | 816 | 
 | 
|---|
| [2836] | 817 | #ifdef KS_DEBUG
 | 
|---|
| [2794] | 818 |   float minval, maxval;
 | 
|---|
| [2836] | 819 | #endif
 | 
|---|
| [2794] | 820 | #ifdef KS_DEBUG
 | 
|---|
 | 821 |   minMax(minval, maxval, specmat);
 | 
|---|
 | 822 |   cout << "Max/Min of input Matrix = (max: " << maxval << ", min: " << minval << ")" << endl;
 | 
|---|
 | 823 | #endif
 | 
|---|
 | 824 | 
 | 
|---|
 | 825 |   uInt ninsp = shiftvec.size();
 | 
|---|
 | 826 |   outmat.resize(nchan_, ninsp*(ninsp-1)/2, 0.);
 | 
|---|
 | 827 |   Matrix<Complex> fftspmat(nchan_/2+1, ninsp, 0.);
 | 
|---|
 | 828 |   Vector<float> rvecref(nchan_, 0.);
 | 
|---|
 | 829 |   Vector<Complex> cvecref(nchan_/2+1, 0.);
 | 
|---|
 | 830 |   uInt icol = 0;
 | 
|---|
 | 831 |   unsigned int nreject = 0;
 | 
|---|
 | 832 | 
 | 
|---|
 | 833 | #ifdef KS_DEBUG
 | 
|---|
 | 834 |   cout << "Starting initial FFT. The number of input spectra = " << ninsp << endl;
 | 
|---|
 | 835 |   cout << "out matrix has ncolumn = " << outmat.ncolumn() << endl;
 | 
|---|
 | 836 | #endif
 | 
|---|
 | 837 | 
 | 
|---|
 | 838 |   for (uInt isp = 0 ; isp < ninsp ; isp++) {
 | 
|---|
 | 839 |     rvecref.reference( specmat.column(isp) );
 | 
|---|
 | 840 |     cvecref.reference( fftspmat.column(isp) );
 | 
|---|
 | 841 | 
 | 
|---|
 | 842 | #ifdef KS_DEBUG
 | 
|---|
 | 843 |     minMax(minval, maxval, rvecref);
 | 
|---|
 | 844 |     cout << "Max/Min of inv FFTed Matrix = (max: " << maxval << ", min: " << minval << ")" << endl;
 | 
|---|
 | 845 | #endif
 | 
|---|
 | 846 | 
 | 
|---|
 | 847 |     fftsf.fft0(cvecref, rvecref, true);
 | 
|---|
 | 848 | 
 | 
|---|
 | 849 | #ifdef KS_DEBUG
 | 
|---|
 | 850 |     double maxr=cvecref[0].real(), minr=cvecref[0].real(),
 | 
|---|
 | 851 |       maxi=cvecref[0].imag(), mini=cvecref[0].imag();
 | 
|---|
 | 852 |     for (uInt i = 1; i<cvecref.size();i++){
 | 
|---|
 | 853 |       maxr = max(maxr, cvecref[i].real());
 | 
|---|
 | 854 |       maxi = max(maxi, cvecref[i].imag());
 | 
|---|
 | 855 |       minr = min(minr, cvecref[i].real());
 | 
|---|
 | 856 |       mini = min(mini, cvecref[i].imag());
 | 
|---|
 | 857 |     }
 | 
|---|
 | 858 |     cout << "Max/Min of inv FFTed Matrix (size=" << cvecref.size() << ") = (max: " << maxr << " + " << maxi << "j , min: " << minr << " + " << mini << "j)" << endl;
 | 
|---|
 | 859 | #endif
 | 
|---|
 | 860 |   }
 | 
|---|
 | 861 | 
 | 
|---|
 | 862 |   //Liberate from reference
 | 
|---|
 | 863 |   rvecref.unique();
 | 
|---|
 | 864 | 
 | 
|---|
 | 865 |   Vector<Complex> cspec(nchan_/2+1, 0.);
 | 
|---|
 | 866 |   const double PI = 6.0 * asin(0.5);
 | 
|---|
 | 867 |   const double nchani = 1. / (float) nchan_;
 | 
|---|
 | 868 |   const Complex trans(0., 1.);
 | 
|---|
 | 869 | #ifdef KS_DEBUG
 | 
|---|
 | 870 |   cout << "starting actual deconvolution" << endl;
 | 
|---|
 | 871 | #endif
 | 
|---|
 | 872 |   for (uInt j = 0 ; j < ninsp ; j++) {
 | 
|---|
 | 873 |     for (uInt k = j+1 ; k < ninsp ; k++) {
 | 
|---|
 | 874 |       const double dx = (shiftvec[k] - shiftvec[j]) * 2. * PI * nchani;
 | 
|---|
 | 875 | 
 | 
|---|
 | 876 | #ifdef KS_DEBUG
 | 
|---|
 | 877 |       cout << "icol = " << icol << endl;
 | 
|---|
 | 878 | #endif
 | 
|---|
 | 879 | 
 | 
|---|
 | 880 |       for (uInt ichan = 0 ; ichan < cspec.size() ; ichan++){
 | 
|---|
 | 881 |         cspec[ichan] = ( fftspmat(ichan, j) + fftspmat(ichan, k) )*0.5;
 | 
|---|
 | 882 |         double phase = dx*ichan;
 | 
|---|
 | 883 |         if ( fabs( sin(phase) ) > threshold){
 | 
|---|
 | 884 |           cspec[ichan] += ( fftspmat(ichan, j) - fftspmat(ichan, k) ) * 0.5
 | 
|---|
 | 885 |             * trans * sin(phase) / ( 1. - cos(phase) );
 | 
|---|
 | 886 |         } else {
 | 
|---|
 | 887 |           nreject++;
 | 
|---|
 | 888 |         }
 | 
|---|
 | 889 |       } // end of channel loop
 | 
|---|
 | 890 | 
 | 
|---|
 | 891 | #ifdef KS_DEBUG
 | 
|---|
 | 892 |       cout << "done calculation of cspec" << endl;
 | 
|---|
 | 893 | #endif
 | 
|---|
 | 894 | 
 | 
|---|
 | 895 |       Vector<Float> rspec;
 | 
|---|
 | 896 |       rspec.reference( outmat.column(icol) );
 | 
|---|
 | 897 | 
 | 
|---|
 | 898 | #ifdef KS_DEBUG
 | 
|---|
 | 899 |       cout << "Starting inverse FFT. icol = " << icol << endl;
 | 
|---|
 | 900 |       //cout << "- size of complex vector = " << cspec.size() << endl;
 | 
|---|
 | 901 |       double maxr=cspec[0].real(), minr=cspec[0].real(),
 | 
|---|
 | 902 |         maxi=cspec[0].imag(), mini=cspec[0].imag();
 | 
|---|
 | 903 |       for (uInt i = 1; i<cspec.size();i++){
 | 
|---|
 | 904 |         maxr = max(maxr, cspec[i].real());
 | 
|---|
 | 905 |         maxi = max(maxi, cspec[i].imag());
 | 
|---|
 | 906 |         minr = min(minr, cspec[i].real());
 | 
|---|
 | 907 |         mini = min(mini, cspec[i].imag());
 | 
|---|
 | 908 |       }
 | 
|---|
 | 909 |       cout << "Max/Min of conv vector (size=" << cspec.size() << ") = (max: " << maxr << " + " << maxi << "j , min: " << minr << " + " << mini << "j)" << endl;
 | 
|---|
 | 910 | #endif
 | 
|---|
 | 911 | 
 | 
|---|
 | 912 |       fftsi.fft0(rspec, cspec, false);
 | 
|---|
 | 913 | 
 | 
|---|
 | 914 | #ifdef KS_DEBUG
 | 
|---|
 | 915 |       //cout << "- size of inversed real vector = " << rspec.size() << endl;
 | 
|---|
 | 916 |       minMax(minval, maxval, rspec);
 | 
|---|
 | 917 |       cout << "Max/Min of inv FFTed Vector (size=" << rspec.size() << ") = (max: " << maxval << ", min: " << minval << ")" << endl;
 | 
|---|
 | 918 |       //cout << "Done inverse FFT. icol = " << icol << endl;
 | 
|---|
 | 919 | #endif
 | 
|---|
 | 920 | 
 | 
|---|
 | 921 |       icol++;
 | 
|---|
 | 922 |     }
 | 
|---|
 | 923 |   }
 | 
|---|
 | 924 | 
 | 
|---|
 | 925 | #ifdef KS_DEBUG
 | 
|---|
 | 926 |   minMax(minval, maxval, outmat);
 | 
|---|
 | 927 |   cout << "Max/Min of inv FFTed Matrix = (max: " << maxval << ", min: " << minval << ")" << endl;
 | 
|---|
 | 928 | #endif
 | 
|---|
 | 929 | 
 | 
|---|
 | 930 |   os << "Threshold = " << threshold << ", Rejected channels = " << nreject << endl;
 | 
|---|
 | 931 | };
 | 
|---|
 | 932 | 
 | 
|---|
 | 933 | 
 | 
|---|
 | 934 | void STSideBandSep::aggregateMat(Matrix<float> &inmat,
 | 
|---|
 | 935 |                                  vector<float> &outvec)
 | 
|---|
 | 936 | {
 | 
|---|
 | 937 |   LogIO os(LogOrigin("STSideBandSep","aggregateMat()", WHERE));
 | 
|---|
 | 938 |   if (inmat.nrow() != nchan_)
 | 
|---|
 | 939 |     throw(AipsError("Internal error. The row numbers of input matrix differs from nchan_"));
 | 
|---|
 | 940 | //   if (outvec.size() != nchan_)
 | 
|---|
 | 941 | //     throw(AipsError("Internal error. The size of output vector should be equal to nchan_"));
 | 
|---|
 | 942 | 
 | 
|---|
 | 943 |   os << "Averaging " << inmat.ncolumn() << " spectra in the input matrix."
 | 
|---|
 | 944 |      << LogIO::POST;
 | 
|---|
 | 945 | 
 | 
|---|
 | 946 |   const uInt nspec = inmat.ncolumn();
 | 
|---|
 | 947 |   const double scale = 1./( (double) nspec );
 | 
|---|
 | 948 |   // initialize values with 0
 | 
|---|
 | 949 |   outvec.assign(nchan_, 0);
 | 
|---|
 | 950 |   for (uInt isp = 0 ; isp < nspec ; isp++) {
 | 
|---|
 | 951 |     for (uInt ich = 0 ; ich < nchan_ ; ich++) {
 | 
|---|
 | 952 |       outvec[ich] += inmat(ich, isp);
 | 
|---|
 | 953 |     }
 | 
|---|
 | 954 |   }
 | 
|---|
 | 955 | 
 | 
|---|
 | 956 |   vector<float>::iterator iter;
 | 
|---|
 | 957 |   for (iter = outvec.begin(); iter != outvec.end(); iter++){
 | 
|---|
 | 958 |     *iter *= scale;
 | 
|---|
 | 959 |   }
 | 
|---|
 | 960 | };
 | 
|---|
 | 961 | 
 | 
|---|
 | 962 | void STSideBandSep::subtractFromOther(const Matrix<float> &shiftmat,
 | 
|---|
 | 963 |                                       const vector<float> &invec,
 | 
|---|
 | 964 |                                       const vector<double> &shift,
 | 
|---|
 | 965 |                                       vector<float> &outvec)
 | 
|---|
 | 966 | {
 | 
|---|
 | 967 |   LogIO os(LogOrigin("STSideBandSep","subtractFromOther()", WHERE));
 | 
|---|
 | 968 |   if (shiftmat.nrow() != nchan_)
 | 
|---|
 | 969 |     throw(AipsError("Internal error. The row numbers of input matrix differs from nchan_"));
 | 
|---|
 | 970 |   if (invec.size() != nchan_)
 | 
|---|
 | 971 |     throw(AipsError("Internal error. The length of input vector should be nchan_"));
 | 
|---|
 | 972 |   if (shift.size() != shiftmat.ncolumn())
 | 
|---|
 | 973 |     throw(AipsError("Internal error. The column numbers of input matrix != the number of elements in shift"));
 | 
|---|
 | 974 | 
 | 
|---|
 | 975 |   const uInt nspec = shiftmat.ncolumn();
 | 
|---|
 | 976 |   Vector<float> subsp(nchan_, 0.), shiftsub;
 | 
|---|
 | 977 |   Matrix<float> submat(nchan_, nspec, 0.);
 | 
|---|
 | 978 |   vector<float>::iterator iter;
 | 
|---|
 | 979 |   for (uInt isp = 0 ; isp < nspec ; isp++) {
 | 
|---|
 | 980 |     for (uInt ich = 0; ich < nchan_ ; ich++) {
 | 
|---|
 | 981 |       subsp(ich) = shiftmat(ich, isp) - invec[ich];
 | 
|---|
 | 982 |     }
 | 
|---|
 | 983 |     shiftsub.reference(submat.column(isp));
 | 
|---|
 | 984 |     shiftSpectrum(subsp, shift[isp], shiftsub);
 | 
|---|
 | 985 |   }
 | 
|---|
 | 986 | 
 | 
|---|
 | 987 |   aggregateMat(submat, outvec);
 | 
|---|
 | 988 | };
 | 
|---|
 | 989 | 
 | 
|---|
 | 990 | 
 | 
|---|
 | 991 | void STSideBandSep::setLO1(const string lo1, const string frame,
 | 
|---|
| [2726] | 992 |                            const double reftime, const string refdir)
 | 
|---|
| [2707] | 993 | {
 | 
|---|
| [2794] | 994 |   Quantum<Double> qfreq;
 | 
|---|
 | 995 |   readQuantity(qfreq, String(lo1));
 | 
|---|
 | 996 |   lo1Freq_ = qfreq.getValue("Hz");
 | 
|---|
| [2707] | 997 |   MFrequency::getType(loFrame_, frame);
 | 
|---|
 | 998 |   loTime_ = reftime;
 | 
|---|
 | 999 |   loDir_ = refdir;
 | 
|---|
 | 1000 | 
 | 
|---|
 | 1001 | #ifdef KS_DEBUG
 | 
|---|
 | 1002 |   cout << "STSideBandSep::setLO1" << endl;
 | 
|---|
 | 1003 |   if (lo1Freq_ > 0.)
 | 
|---|
 | 1004 |     cout << "lo1 = " << lo1Freq_ << " [Hz] (" << frame << ")" << endl;
 | 
|---|
 | 1005 |   if (loTime_ > 0.)
 | 
|---|
 | 1006 |     cout << "ref time = " << loTime_ << " [day]" << endl;
 | 
|---|
 | 1007 |   if (!loDir_.empty())
 | 
|---|
 | 1008 |     cout << "ref direction = " << loDir_ << " [day]" << endl;
 | 
|---|
 | 1009 | #endif
 | 
|---|
 | 1010 | };
 | 
|---|
 | 1011 | 
 | 
|---|
| [2711] | 1012 | void STSideBandSep::setLO1Root(string name)
 | 
|---|
| [2707] | 1013 | {
 | 
|---|
| [2711] | 1014 |    LogIO os(LogOrigin("STSideBandSep","setLO1Root()", WHERE));
 | 
|---|
 | 1015 |    os << "Searching for '" << name << "'..." << LogIO::POST;
 | 
|---|
 | 1016 |   // Check for existance of the file
 | 
|---|
 | 1017 |   if (!checkFile(name)) {
 | 
|---|
| [2707] | 1018 |      throw(AipsError("File does not exist"));
 | 
|---|
 | 1019 |   }
 | 
|---|
| [2711] | 1020 |   if (name[(name.size()-1)] == '/')
 | 
|---|
 | 1021 |     name = name.substr(0,(name.size()-2));
 | 
|---|
| [2707] | 1022 | 
 | 
|---|
| [2711] | 1023 |   if (checkFile(name+"/Receiver.xml", "file") &&
 | 
|---|
 | 1024 |       checkFile(name+"/SpectralWindow.xml", "file")){
 | 
|---|
 | 1025 |     os << "Found '" << name << "/Receiver.xml' ... got an ASDM name." << LogIO::POST;
 | 
|---|
 | 1026 |     asdmName_ = name;
 | 
|---|
 | 1027 |   } else if (checkFile(name+"/ASDM_RECEIVER") &&
 | 
|---|
 | 1028 |              checkFile(name+"/ASDM_SPECTRALWINDOW")){
 | 
|---|
 | 1029 |     os << "Found '" << name << "/ASDM_RECEIVER' ... got a Table name." << LogIO::POST;
 | 
|---|
 | 1030 |     asisName_ = name;
 | 
|---|
 | 1031 |   } else {
 | 
|---|
 | 1032 |     throw(AipsError("Invalid file name. Set an MS or ASDM name."));
 | 
|---|
 | 1033 |   }
 | 
|---|
| [2707] | 1034 | 
 | 
|---|
 | 1035 | #ifdef KS_DEBUG
 | 
|---|
| [2711] | 1036 |   cout << "STSideBandSep::setLO1Root" << endl;
 | 
|---|
 | 1037 |   if (!asdmName_.empty())
 | 
|---|
 | 1038 |     cout << "asdm name = " << asdmName_ << endl;
 | 
|---|
 | 1039 |   if (!asisName_.empty())
 | 
|---|
 | 1040 |     cout << "MS name = " << asisName_ << endl;
 | 
|---|
| [2707] | 1041 | #endif
 | 
|---|
 | 1042 | };
 | 
|---|
 | 1043 | 
 | 
|---|
| [2712] | 1044 | 
 | 
|---|
| [2794] | 1045 | void STSideBandSep::solveImageFrequency()
 | 
|---|
| [2707] | 1046 | {
 | 
|---|
 | 1047 |   LogIO os(LogOrigin("STSideBandSep","solveImageFreqency()", WHERE));
 | 
|---|
 | 1048 |   os << "Start calculating frequencies of image side band" << LogIO::POST;
 | 
|---|
 | 1049 | 
 | 
|---|
 | 1050 |   if (imgTab_p.null())
 | 
|---|
 | 1051 |     throw AipsError("STSideBandSep::solveImageFreqency - an image side band scantable should be set first");
 | 
|---|
 | 1052 | 
 | 
|---|
| [2711] | 1053 |   // Convert frequency REFVAL to the value in frame of LO.
 | 
|---|
| [2707] | 1054 |   // The code assumes that imgTab_p has only an IF and only a FREQ_ID
 | 
|---|
 | 1055 |   // is associated to an IFNO
 | 
|---|
 | 1056 |   // TODO: More complete Procedure would be
 | 
|---|
 | 1057 |   // 1. Get freq IDs associated to sigIfno_
 | 
|---|
 | 1058 |   // 2. Get freq information of the freq IDs
 | 
|---|
 | 1059 |   // 3. For each freqIDs, get freq infromation in TOPO and an LO1 
 | 
|---|
 | 1060 |   //    frequency and calculate image band frequencies.
 | 
|---|
 | 1061 |   STFrequencies freqTab_ = imgTab_p->frequencies();
 | 
|---|
 | 1062 |   // get the base frame of table
 | 
|---|
 | 1063 |   const MFrequency::Types tabframe = freqTab_.getFrame(true);
 | 
|---|
 | 1064 |   TableVector<uInt> freqIdVec( imgTab_p->table(), "FREQ_ID" );
 | 
|---|
 | 1065 |   // assuming single freqID per IFNO
 | 
|---|
 | 1066 |   uInt freqid = freqIdVec(0);
 | 
|---|
| [2711] | 1067 |   int nChan = imgTab_p->nchan(imgTab_p->getIF(0));
 | 
|---|
| [2707] | 1068 |   double refpix, refval, increment ;
 | 
|---|
 | 1069 |   freqTab_.getEntry(refpix, refval, increment, freqid);
 | 
|---|
 | 1070 |   //MFrequency sigrefval = MFrequency(MVFrequency(refval),tabframe);
 | 
|---|
 | 1071 |   // get freq infromation of sigIfno_ in loFrame_
 | 
|---|
 | 1072 |   const MPosition mp = imgTab_p->getAntennaPosition();
 | 
|---|
 | 1073 |   MEpoch me;
 | 
|---|
 | 1074 |   MDirection md;
 | 
|---|
 | 1075 |   if (loTime_ < 0.)
 | 
|---|
 | 1076 |     me = imgTab_p->getEpoch(-1);
 | 
|---|
 | 1077 |   else
 | 
|---|
 | 1078 |     me = MEpoch(MVEpoch(loTime_));
 | 
|---|
 | 1079 |   if (loDir_.empty()) {
 | 
|---|
 | 1080 |     ArrayColumn<Double> srcdirCol_;
 | 
|---|
 | 1081 |     srcdirCol_.attach(imgTab_p->table(), "SRCDIRECTION");
 | 
|---|
 | 1082 |     // Assuming J2000 and SRCDIRECTION in unit of rad
 | 
|---|
 | 1083 |     Quantum<Double> srcra = Quantum<Double>(srcdirCol_(0)(IPosition(1,0)), "rad");
 | 
|---|
 | 1084 |     Quantum<Double> srcdec = Quantum<Double>(srcdirCol_(0)(IPosition(1,1)), "rad");
 | 
|---|
 | 1085 |     md = MDirection(srcra, srcdec, MDirection::J2000);
 | 
|---|
 | 1086 |     //imgTab_p->getDirection(0);
 | 
|---|
 | 1087 |   } else {
 | 
|---|
 | 1088 |     // parse direction string
 | 
|---|
 | 1089 |     string::size_type pos0 = loDir_.find(" ");
 | 
|---|
 | 1090 |     
 | 
|---|
 | 1091 |     if (pos0 == string::npos) {
 | 
|---|
 | 1092 |       throw AipsError("bad string format in LO1 direction");
 | 
|---|
 | 1093 |     }
 | 
|---|
 | 1094 |     string::size_type pos1 = loDir_.find(" ", pos0+1);
 | 
|---|
 | 1095 |     String sepoch, sra, sdec;
 | 
|---|
 | 1096 |     if (pos1 != string::npos) {
 | 
|---|
 | 1097 |       sepoch = loDir_.substr(0, pos0);
 | 
|---|
 | 1098 |       sra = loDir_.substr(pos0+1, pos1-pos0);
 | 
|---|
 | 1099 |       sdec = loDir_.substr(pos1+1);
 | 
|---|
 | 1100 |     }
 | 
|---|
 | 1101 |     MDirection::Types epoch;
 | 
|---|
 | 1102 |     MDirection::getType(epoch, sepoch);
 | 
|---|
 | 1103 |     QuantumHolder qh ;
 | 
|---|
 | 1104 |     String err ;
 | 
|---|
 | 1105 |     qh.fromString( err, sra);
 | 
|---|
 | 1106 |     Quantum<Double> ra = qh.asQuantumDouble() ;
 | 
|---|
 | 1107 |     qh.fromString( err, sdec ) ;
 | 
|---|
 | 1108 |     Quantum<Double> dec = qh.asQuantumDouble() ;
 | 
|---|
| [2716] | 1109 |     //md = MDirection(ra.getValue("rad"), dec.getValue("rad"),epoch);
 | 
|---|
 | 1110 |     md = MDirection(ra, dec, epoch);
 | 
|---|
| [2707] | 1111 |   }
 | 
|---|
 | 1112 |   MeasFrame mframe( me, mp, md );
 | 
|---|
| [2709] | 1113 |   MFrequency::Convert tobframe(loFrame_, MFrequency::Ref(tabframe, mframe));
 | 
|---|
 | 1114 |   MFrequency::Convert toloframe(tabframe, MFrequency::Ref(loFrame_, mframe));
 | 
|---|
| [2711] | 1115 |   // Convert refval to loFrame_
 | 
|---|
| [2707] | 1116 |   double sigrefval;
 | 
|---|
 | 1117 |   if (tabframe == loFrame_)
 | 
|---|
 | 1118 |     sigrefval = refval;
 | 
|---|
 | 1119 |   else
 | 
|---|
 | 1120 |     sigrefval = toloframe(Quantum<Double>(refval, "Hz")).get("Hz").getValue();
 | 
|---|
 | 1121 | 
 | 
|---|
| [2711] | 1122 |   // Check for the availability of LO1
 | 
|---|
 | 1123 |   if (lo1Freq_ > 0.) {
 | 
|---|
 | 1124 |     os << "Using user defined LO1 frequency." << LogIO::POST;
 | 
|---|
 | 1125 |   } else if (!asisName_.empty()) {
 | 
|---|
 | 1126 |       // MS name is set.
 | 
|---|
 | 1127 |     os << "Using user defined MS (asis): " << asisName_ << LogIO::POST;
 | 
|---|
 | 1128 |     if (!getLo1FromAsisTab(asisName_, sigrefval, refpix, increment, nChan)) {
 | 
|---|
 | 1129 |       throw AipsError("Failed to get LO1 frequency from MS");
 | 
|---|
 | 1130 |     }
 | 
|---|
 | 1131 |   } else if (!asdmName_.empty()) {
 | 
|---|
 | 1132 |       // ASDM name is set.
 | 
|---|
 | 1133 |     os << "Using user defined ASDM: " << asdmName_ << LogIO::POST;
 | 
|---|
 | 1134 |     if (!getLo1FromAsdm(asdmName_, sigrefval, refpix, increment, nChan)) {
 | 
|---|
 | 1135 |       throw AipsError("Failed to get LO1 frequency from ASDM");
 | 
|---|
 | 1136 |     }
 | 
|---|
 | 1137 |   } else {
 | 
|---|
 | 1138 |     // Try getting ASDM name from scantable header
 | 
|---|
 | 1139 |     os << "Try getting information from scantable header" << LogIO::POST;
 | 
|---|
| [2794] | 1140 |     if (!getLo1FromScanTab(tableList_[0], sigrefval, refpix, increment, nChan)) {
 | 
|---|
| [2711] | 1141 |       //throw AipsError("Failed to get LO1 frequency from asis table");
 | 
|---|
 | 1142 |       os << LogIO::WARN << "Failed to get LO1 frequency using information in scantable." << LogIO::POST;
 | 
|---|
 | 1143 |       os << LogIO::WARN << "Could not fill frequency information of IMAGE sideband properly." << LogIO::POST;
 | 
|---|
 | 1144 |       os << LogIO::WARN << "Storing values of SIGNAL sideband in FREQUENCIES table" << LogIO::POST;
 | 
|---|
 | 1145 |       return;
 | 
|---|
 | 1146 |     }
 | 
|---|
 | 1147 |   }
 | 
|---|
| [2794] | 1148 | 
 | 
|---|
| [2711] | 1149 |   // LO1 should now be ready.
 | 
|---|
 | 1150 |   if (lo1Freq_ < 0.)
 | 
|---|
 | 1151 |     throw(AipsError("Got negative LO1 Frequency"));
 | 
|---|
 | 1152 | 
 | 
|---|
| [2794] | 1153 |   // Print summary
 | 
|---|
 | 1154 |   {
 | 
|---|
 | 1155 |     // LO1
 | 
|---|
 | 1156 |     Vector<Double> dirvec = md.getAngle(Unit(String("rad"))).getValue();
 | 
|---|
 | 1157 |     os << "[LO1 settings]" << LogIO::POST;
 | 
|---|
 | 1158 |     os << "- Frequency: " << lo1Freq_ << " [Hz] ("
 | 
|---|
 | 1159 |        << MFrequency::showType(loFrame_) << ")" << LogIO::POST;
 | 
|---|
 | 1160 |     os << "- Reference time: " << me.get(Unit(String("d"))).getValue()
 | 
|---|
 | 1161 |        << " [day]" << LogIO::POST;
 | 
|---|
 | 1162 |     os << "- Reference direction: [" << dirvec[0] << ", " << dirvec[1]
 | 
|---|
 | 1163 |        << "] (" << md.getRefString() << ") " << LogIO::POST;
 | 
|---|
| [2711] | 1164 | 
 | 
|---|
| [2794] | 1165 |     // signal sideband
 | 
|---|
 | 1166 |     os << "[Signal side band]" << LogIO::POST;
 | 
|---|
 | 1167 |     os << "- IFNO: " << imgTab_p->getIF(0) << " (FREQ_ID = " << freqid << ")"
 | 
|---|
 | 1168 |        << LogIO::POST;
 | 
|---|
 | 1169 |     os << "- Reference value: " << refval << " [Hz] ("
 | 
|---|
 | 1170 |        << MFrequency::showType(tabframe) << ") = "
 | 
|---|
 | 1171 |        << sigrefval << " [Hz] (" <<  MFrequency::showType(loFrame_)
 | 
|---|
 | 1172 |        << ")" << LogIO::POST;
 | 
|---|
 | 1173 |     os << "- Reference pixel: " << refpix  << LogIO::POST;
 | 
|---|
 | 1174 |     os << "- Increment: " << increment << " [Hz]" << LogIO::POST;
 | 
|---|
 | 1175 |   }
 | 
|---|
| [2711] | 1176 | 
 | 
|---|
 | 1177 |   // Calculate image band incr and refval in loFrame_
 | 
|---|
| [2707] | 1178 |   Double imgincr = -increment;
 | 
|---|
 | 1179 |   Double imgrefval = 2 * lo1Freq_ - sigrefval;
 | 
|---|
 | 1180 |   Double imgrefval_tab = imgrefval;
 | 
|---|
| [2711] | 1181 |   // Convert imgrefval back to table base frame
 | 
|---|
| [2707] | 1182 |   if (tabframe != loFrame_)
 | 
|---|
 | 1183 |     imgrefval = tobframe(Quantum<Double>(imgrefval, "Hz")).get("Hz").getValue();
 | 
|---|
| [2711] | 1184 |   // Set new frequencies table
 | 
|---|
| [2707] | 1185 |   uInt fIDnew = freqTab_.addEntry(refpix, imgrefval, imgincr);
 | 
|---|
| [2711] | 1186 |   // Update FREQ_ID in table.
 | 
|---|
| [2707] | 1187 |   freqIdVec = fIDnew;
 | 
|---|
| [2711] | 1188 | 
 | 
|---|
| [2794] | 1189 |   // Print summary (Image sideband)
 | 
|---|
 | 1190 |   {
 | 
|---|
 | 1191 |     os << "[Image side band]" << LogIO::POST;
 | 
|---|
 | 1192 |     os << "- IFNO: " << imgTab_p->getIF(0) << " (FREQ_ID = " << freqIdVec(0)
 | 
|---|
 | 1193 |        << ")" << LogIO::POST;
 | 
|---|
 | 1194 |     os << "- Reference value: " << imgrefval << " [Hz] ("
 | 
|---|
 | 1195 |        << MFrequency::showType(tabframe) << ") = "
 | 
|---|
 | 1196 |        << imgrefval_tab << " [Hz] (" <<  MFrequency::showType(loFrame_)
 | 
|---|
 | 1197 |        << ")" << LogIO::POST;
 | 
|---|
 | 1198 |     os << "- Reference pixel: " << refpix  << LogIO::POST;
 | 
|---|
 | 1199 |     os << "- Increment: " << imgincr << " [Hz]" << LogIO::POST;
 | 
|---|
 | 1200 |   }
 | 
|---|
| [2707] | 1201 | };
 | 
|---|
 | 1202 | 
 | 
|---|
 | 1203 | Bool STSideBandSep::checkFile(const string name, string type)
 | 
|---|
 | 1204 | {
 | 
|---|
 | 1205 |   File file(name);
 | 
|---|
 | 1206 |   if (!file.exists()){
 | 
|---|
 | 1207 |     return false;
 | 
|---|
 | 1208 |   } else if (type.empty()) {
 | 
|---|
 | 1209 |     return true;
 | 
|---|
 | 1210 |   } else {
 | 
|---|
 | 1211 |     // Check for file type
 | 
|---|
 | 1212 |     switch (tolower(type[0])) {
 | 
|---|
 | 1213 |     case 'f':
 | 
|---|
 | 1214 |       return file.isRegular(True);
 | 
|---|
 | 1215 |     case 'd':
 | 
|---|
 | 1216 |       return file.isDirectory(True);
 | 
|---|
 | 1217 |     case 's':
 | 
|---|
 | 1218 |       return file.isSymLink();
 | 
|---|
 | 1219 |     default:
 | 
|---|
 | 1220 |       throw AipsError("Invalid file type. Available types are 'file', 'directory', and 'symlink'.");
 | 
|---|
 | 1221 |     }
 | 
|---|
 | 1222 |   }
 | 
|---|
 | 1223 | };
 | 
|---|
 | 1224 | 
 | 
|---|
| [2711] | 1225 | bool STSideBandSep::getLo1FromAsdm(const string asdmname,
 | 
|---|
| [2836] | 1226 |                                    const double /*refval*/,
 | 
|---|
 | 1227 |                                    const double /*refpix*/,
 | 
|---|
 | 1228 |                                    const double /*increment*/,
 | 
|---|
 | 1229 |                                    const int /*nChan*/)
 | 
|---|
| [2707] | 1230 | {
 | 
|---|
 | 1231 |   // Check for relevant tables.
 | 
|---|
 | 1232 |   string spwname = asdmname + "/SpectralWindow.xml";
 | 
|---|
 | 1233 |   string recname = asdmname + "/Receiver.xml";
 | 
|---|
 | 1234 |   if (!checkFile(spwname) || !checkFile(recname)) {
 | 
|---|
 | 1235 |     throw(AipsError("Could not find subtables in ASDM"));
 | 
|---|
 | 1236 |   }
 | 
|---|
 | 1237 | 
 | 
|---|
 | 1238 |   return false;
 | 
|---|
 | 1239 | 
 | 
|---|
 | 1240 | };
 | 
|---|
 | 1241 | 
 | 
|---|
 | 1242 | 
 | 
|---|
| [2711] | 1243 | bool STSideBandSep::getLo1FromScanTab(CountedPtr< Scantable > &scantab, 
 | 
|---|
 | 1244 |                                       const double refval,
 | 
|---|
 | 1245 |                                       const double refpix,
 | 
|---|
 | 1246 |                                       const double increment,
 | 
|---|
 | 1247 |                                       const int nChan)
 | 
|---|
| [2707] | 1248 | {
 | 
|---|
| [2711] | 1249 |   LogIO os(LogOrigin("STSideBandSep","getLo1FromScanTab()", WHERE));
 | 
|---|
| [2707] | 1250 |   // Check for relevant tables.
 | 
|---|
| [2712] | 1251 |   const TableRecord &rec = scantab->table().keywordSet() ;
 | 
|---|
| [2711] | 1252 |   String spwname, recname;
 | 
|---|
| [2712] | 1253 |   if (rec.isDefined("ASDM_SPECTRALWINDOW") && rec.isDefined("ASDM_RECEIVER")){
 | 
|---|
 | 1254 |     spwname = rec.asString("ASDM_SPECTRALWINDOW");
 | 
|---|
 | 1255 |     recname = rec.asString("ASDM_RECEIVER");
 | 
|---|
 | 1256 |   }
 | 
|---|
 | 1257 |   else {
 | 
|---|
| [2711] | 1258 |     // keywords are not there
 | 
|---|
 | 1259 |     os << LogIO::WARN
 | 
|---|
 | 1260 |        << "Could not find necessary table names in scantable header."
 | 
|---|
 | 1261 |        << LogIO::POST;
 | 
|---|
 | 1262 |     return false;
 | 
|---|
 | 1263 |   }
 | 
|---|
| [2707] | 1264 |   if (!checkFile(spwname,"directory") || !checkFile(recname,"directory")) {
 | 
|---|
| [2711] | 1265 |     throw(AipsError("Could not find relevant subtables in MS"));
 | 
|---|
| [2707] | 1266 |   }
 | 
|---|
| [2711] | 1267 |   // Get root MS name
 | 
|---|
 | 1268 |   string msname;
 | 
|---|
 | 1269 |   const String recsuff = "/ASDM_RECEIVER";
 | 
|---|
 | 1270 |   String::size_type pos;
 | 
|---|
| [2712] | 1271 |   pos = recname.size()-recsuff.size();
 | 
|---|
| [2711] | 1272 |   if (recname.substr(pos) == recsuff)
 | 
|---|
| [2712] | 1273 |     msname = recname.substr(0, pos);
 | 
|---|
| [2711] | 1274 |   else
 | 
|---|
 | 1275 |     throw(AipsError("Internal error in parsing table name from a scantable keyword."));
 | 
|---|
| [2707] | 1276 | 
 | 
|---|
| [2711] | 1277 |   if (!checkFile(msname))
 | 
|---|
 | 1278 |     throw(AipsError("Internal error in parsing MS name from a scantable keyword."));
 | 
|---|
| [2707] | 1279 | 
 | 
|---|
| [2711] | 1280 |   return getLo1FromAsisTab(msname, refval, refpix, increment, nChan);
 | 
|---|
 | 1281 | 
 | 
|---|
| [2707] | 1282 | };
 | 
|---|
 | 1283 | 
 | 
|---|
| [2711] | 1284 | bool STSideBandSep::getLo1FromAsisTab(const string msname,
 | 
|---|
 | 1285 |                                       const double refval,
 | 
|---|
 | 1286 |                                       const double refpix,
 | 
|---|
 | 1287 |                                       const double increment,
 | 
|---|
 | 1288 |                                       const int nChan)
 | 
|---|
 | 1289 | {
 | 
|---|
 | 1290 |   LogIO os(LogOrigin("STSideBandSep","getLo1FromAsisTab()", WHERE));
 | 
|---|
 | 1291 |   os << "Searching an LO1 frequency in '" << msname << "'" << LogIO::POST;
 | 
|---|
 | 1292 |   // Check for relevant tables.
 | 
|---|
 | 1293 |   const string spwname = msname + "/ASDM_SPECTRALWINDOW";
 | 
|---|
 | 1294 |   const string recname = msname + "/ASDM_RECEIVER";
 | 
|---|
 | 1295 |   if (!checkFile(spwname,"directory") || !checkFile(recname,"directory")) {
 | 
|---|
 | 1296 |     throw(AipsError("Could not find relevant tables in MS"));
 | 
|---|
 | 1297 |   }
 | 
|---|
| [2707] | 1298 | 
 | 
|---|
| [2711] | 1299 |   Table spwtab_ = Table(spwname);
 | 
|---|
 | 1300 |   String asdmSpw;
 | 
|---|
 | 1301 |   ROTableRow spwrow(spwtab_);
 | 
|---|
 | 1302 |   const Double rtol = 0.01;
 | 
|---|
 | 1303 |   for (uInt idx = 0; idx < spwtab_.nrow(); idx++){
 | 
|---|
 | 1304 |     const TableRecord& rec = spwrow.get(idx);
 | 
|---|
 | 1305 |     // Compare nchan
 | 
|---|
 | 1306 |     if (rec.asInt("numChan") != (Int) nChan)
 | 
|---|
 | 1307 |       continue;
 | 
|---|
 | 1308 |     // Compare increment
 | 
|---|
 | 1309 |     Double asdminc;
 | 
|---|
 | 1310 |     Array<Double> incarr = rec.asArrayDouble("chanWidthArray");
 | 
|---|
 | 1311 |     if (incarr.size() > 0)
 | 
|---|
 | 1312 |       asdminc = incarr(IPosition(1, (uInt) refpix));
 | 
|---|
 | 1313 |     else
 | 
|---|
 | 1314 |       asdminc = rec.asDouble("chanWidth");
 | 
|---|
 | 1315 |     if (abs(asdminc - abs(increment)) > rtol * abs(increment))
 | 
|---|
 | 1316 |       continue;
 | 
|---|
 | 1317 |     // Compare refval
 | 
|---|
 | 1318 |     Double asdmrefv;
 | 
|---|
 | 1319 |     Array<Double> refvarr = rec.asArrayDouble("chanFreqArray");
 | 
|---|
 | 1320 |     if (refvarr.size() > 0){
 | 
|---|
 | 1321 |       const uInt iref = (uInt) refpix;
 | 
|---|
 | 1322 |       const Double ratio = refpix - (Double) iref;
 | 
|---|
 | 1323 |       asdmrefv = refvarr(IPosition(1, iref))*(1.-ratio)
 | 
|---|
 | 1324 |         + refvarr(IPosition(1,iref+1))*ratio;
 | 
|---|
 | 1325 |     }
 | 
|---|
 | 1326 |     else {
 | 
|---|
 | 1327 |       const Double ch0 = rec.asDouble("chanFreqStart");
 | 
|---|
 | 1328 |       const Double chstep = rec.asDouble("chanFreqStep");
 | 
|---|
 | 1329 |       asdmrefv = ch0 + chstep * refpix;
 | 
|---|
 | 1330 |     }
 | 
|---|
 | 1331 |     if (abs(asdmrefv - refval) < 0.5*abs(asdminc)){
 | 
|---|
 | 1332 |       asdmSpw = rec.asString("spectralWindowId");
 | 
|---|
 | 1333 |       break;
 | 
|---|
 | 1334 |     }
 | 
|---|
 | 1335 |   }
 | 
|---|
 | 1336 | 
 | 
|---|
 | 1337 |   if (asdmSpw.empty()){
 | 
|---|
 | 1338 |     os << LogIO::WARN << "Could not find relevant SPW ID in " << spwname << LogIO::POST;
 | 
|---|
 | 1339 |     return false;
 | 
|---|
 | 1340 |   }
 | 
|---|
 | 1341 |   else {
 | 
|---|
 | 1342 |     os << asdmSpw << " in " << spwname
 | 
|---|
 | 1343 |        << " matches the freqeuncies of signal side band." << LogIO::POST;
 | 
|---|
 | 1344 |   }
 | 
|---|
 | 1345 | 
 | 
|---|
 | 1346 |   Table rectab_ = Table(recname);
 | 
|---|
 | 1347 |   ROTableRow recrow(rectab_);
 | 
|---|
 | 1348 |   for (uInt idx = 0; idx < rectab_.nrow(); idx++){
 | 
|---|
 | 1349 |     const TableRecord& rec = recrow.get(idx);
 | 
|---|
 | 1350 |     if (rec.asString("spectralWindowId") == asdmSpw){
 | 
|---|
 | 1351 |       const Array<Double> loarr = rec.asArrayDouble("freqLO");
 | 
|---|
 | 1352 |       lo1Freq_ = loarr(IPosition(1,0));
 | 
|---|
 | 1353 |       os << "Found LO1 Frequency in " << recname << ": "
 | 
|---|
 | 1354 |          << lo1Freq_ << " [Hz]" << LogIO::POST;
 | 
|---|
 | 1355 |       return true;
 | 
|---|
 | 1356 |     }
 | 
|---|
 | 1357 |   }
 | 
|---|
 | 1358 |   os << LogIO::WARN << "Could not find " << asdmSpw << " in " << recname
 | 
|---|
 | 1359 |      << LogIO::POST;
 | 
|---|
 | 1360 |   return false;
 | 
|---|
 | 1361 | };
 | 
|---|
 | 1362 | 
 | 
|---|
| [2707] | 1363 | } //namespace asap
 | 
|---|