1 | #include <iostream> |
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2 | #include <fstream> |
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3 | |
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4 | #include <casa/BasicSL/String.h> |
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5 | #include <casa/Arrays/Vector.h> |
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6 | #include <casa/Arrays/Matrix.h> |
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7 | #include <casa/Arrays/Cube.h> |
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8 | #include <casa/Arrays/ArrayMath.h> |
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9 | #include <casa/Arrays/ArrayIter.h> |
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10 | #include <casa/Quanta/Quantum.h> |
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11 | #include <casa/Quanta/QuantumHolder.h> |
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12 | #include <casa/Utilities/CountedPtr.h> |
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13 | #include <casa/Logging/LogIO.h> |
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14 | |
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15 | #include <tables/Tables/Table.h> |
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16 | #include <tables/Tables/TableRecord.h> |
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17 | #include <tables/Tables/ExprNode.h> |
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18 | #include <tables/Tables/ScalarColumn.h> |
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19 | #include <tables/Tables/ArrayColumn.h> |
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20 | #include <tables/Tables/TableIter.h> |
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21 | |
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22 | #include <measures/Measures/MDirection.h> |
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23 | |
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24 | #include <MathUtils.h> |
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25 | |
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26 | #include "STGrid.h" |
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27 | |
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28 | using namespace std ; |
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29 | using namespace concurrent ; |
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30 | using namespace casa ; |
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31 | using namespace asap ; |
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32 | |
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33 | namespace asap { |
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34 | |
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35 | // for performance check |
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36 | double eToInt = 0.0 ; |
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37 | double eGetWeight = 0.0 ; |
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38 | |
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39 | // constructor |
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40 | STGrid::STGrid() |
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41 | : vshape_( 1 ), wshape_( 2 ), dshape_( 2 ) |
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42 | { |
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43 | init() ; |
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44 | } |
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45 | |
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46 | STGrid::STGrid( const string infile ) |
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47 | : vshape_( 1 ), wshape_( 2 ), dshape_( 2 ) |
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48 | { |
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49 | init() ; |
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50 | |
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51 | setFileIn( infile ) ; |
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52 | } |
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53 | |
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54 | STGrid::STGrid( const vector<string> infile ) |
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55 | { |
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56 | init() ; |
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57 | |
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58 | setFileList( infile ) ; |
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59 | } |
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60 | |
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61 | void STGrid::init() |
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62 | { |
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63 | ifno_ = -1 ; |
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64 | nx_ = -1 ; |
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65 | ny_ = -1 ; |
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66 | npol_ = 0 ; |
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67 | nchan_ = 0 ; |
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68 | nrow_ = 0 ; |
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69 | cellx_ = 0.0 ; |
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70 | celly_ = 0.0 ; |
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71 | center_ = Vector<Double> ( 2, 0.0 ) ; |
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72 | convType_ = "BOX" ; |
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73 | wtype_ = "UNIFORM" ; |
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74 | convSupport_ = -1 ; |
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75 | userSupport_ = -1 ; |
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76 | convSampling_ = 100 ; |
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77 | nprocessed_ = 0 ; |
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78 | nchunk_ = 0 ; |
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79 | |
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80 | // initialize user input |
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81 | nxUI_ = -1 ; |
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82 | nyUI_ = -1 ; |
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83 | cellxUI_ = "" ; |
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84 | cellyUI_ = "" ; |
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85 | centerUI_ = "" ; |
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86 | } |
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87 | |
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88 | void STGrid::setFileIn( const string infile ) |
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89 | { |
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90 | nfile_ = 1 ; |
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91 | String name( infile ) ; |
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92 | infileList_.resize( nfile_ ) ; |
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93 | infileList_[0] = String(infile) ; |
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94 | } |
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95 | |
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96 | void STGrid::setFileList( const vector<string> infile ) |
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97 | { |
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98 | nfile_ = infile.size() ; |
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99 | infileList_.resize( nfile_ ) ; |
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100 | for ( uInt i = 0 ; i < nfile_ ; i++ ) { |
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101 | infileList_[i] = infile[i] ; |
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102 | } |
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103 | } |
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104 | |
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105 | void STGrid::setPolList( vector<unsigned int> pols ) |
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106 | { |
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107 | pollist_.assign( Vector<uInt>( pols ) ) ; |
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108 | } |
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109 | |
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110 | void STGrid::setScanList( vector<unsigned int> scans ) |
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111 | { |
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112 | scanlist_.assign( Vector<uInt>( scans ) ) ; |
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113 | } |
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114 | |
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115 | void STGrid::setWeight( const string wType ) |
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116 | { |
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117 | wtype_ = String( wType ) ; |
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118 | wtype_.upcase() ; |
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119 | } |
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120 | |
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121 | void STGrid::defineImage( int nx, |
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122 | int ny, |
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123 | string scellx, |
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124 | string scelly, |
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125 | string scenter ) |
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126 | { |
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127 | nxUI_ = (Int)nx ; |
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128 | nyUI_ = (Int)ny ; |
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129 | cellxUI_ = String( scellx ) ; |
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130 | cellyUI_ = String( scelly ) ; |
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131 | centerUI_ = String( scenter ) ; |
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132 | } |
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133 | |
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134 | void STGrid::setFunc( string convType, |
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135 | int convSupport ) |
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136 | { |
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137 | convType_ = String( convType ) ; |
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138 | convType_.upcase() ; |
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139 | userSupport_ = (Int)convSupport ; |
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140 | } |
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141 | |
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142 | #define NEED_UNDERSCORES |
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143 | #if defined(NEED_UNDERSCORES) |
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144 | #define ggridsd ggridsd_ |
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145 | #endif |
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146 | extern "C" { |
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147 | void ggridsd(Double*, |
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148 | const Complex*, |
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149 | Int*, |
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150 | Int*, |
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151 | Int*, |
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152 | const Int*, |
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153 | const Int*, |
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154 | const Float*, |
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155 | Int*, |
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156 | Int*, |
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157 | Complex*, |
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158 | Float*, |
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159 | Int*, |
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160 | Int*, |
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161 | Int *, |
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162 | Int *, |
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163 | Int*, |
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164 | Int*, |
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165 | Float*, |
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166 | Int*, |
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167 | Int*, |
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168 | Double*); |
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169 | } |
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170 | void STGrid::call_ggridsd( Array<Double> &xypos, |
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171 | Array<Complex> &spectra, |
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172 | Int &nvispol, |
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173 | Int &nvischan, |
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174 | Array<Int> &flagtra, |
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175 | Array<Int> &flagrow, |
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176 | Array<Float> &weight, |
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177 | Int &nrow, |
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178 | Int &irow, |
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179 | Array<Complex> &gdata, |
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180 | Array<Float> &gwgt, |
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181 | Int &nx, |
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182 | Int &ny, |
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183 | Int &npol, |
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184 | Int &nchan, |
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185 | Int &support, |
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186 | Int &sampling, |
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187 | Vector<Float> &convFunc, |
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188 | Int *chanMap, |
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189 | Int *polMap ) |
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190 | { |
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191 | // parameters for gridding |
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192 | Int idopsf = 0 ; |
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193 | Int len = npol*nchan ; |
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194 | Double *sumw_p = new Double[len] ; |
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195 | { |
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196 | Double *work_p = sumw_p ; |
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197 | for ( Int i = 0 ; i < len ; i++ ) { |
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198 | *work_p = 0.0 ; |
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199 | work_p++ ; |
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200 | } |
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201 | } |
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202 | |
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203 | // prepare pointer |
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204 | Bool deletePos, deleteData, deleteWgt, deleteFlag, deleteFlagR, deleteConv, deleteDataG, deleteWgtG ; |
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205 | Double *xy_p = xypos.getStorage( deletePos ) ; |
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206 | const Complex *values_p = spectra.getStorage( deleteData ) ; |
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207 | const Int *flag_p = flagtra.getStorage( deleteFlag ) ; |
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208 | const Int *rflag_p = flagrow.getStorage( deleteFlagR ) ; |
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209 | const Float *wgt_p = weight.getStorage( deleteWgt ) ; |
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210 | Complex *grid_p = gdata.getStorage( deleteDataG ) ; |
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211 | Float *wgrid_p = gwgt.getStorage( deleteWgtG ) ; |
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212 | Float *conv_p = convFunc.getStorage( deleteConv ) ; |
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213 | |
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214 | // pass copy of irow to ggridsd since it will be modified in theroutine |
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215 | Int irowCopy = irow ; |
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216 | |
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217 | // call ggridsd |
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218 | ggridsd( xy_p, |
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219 | values_p, |
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220 | &nvispol, |
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221 | &nvischan, |
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222 | &idopsf, |
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223 | flag_p, |
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224 | rflag_p, |
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225 | wgt_p, |
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226 | &nrow, |
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227 | &irowCopy, |
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228 | grid_p, |
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229 | wgrid_p, |
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230 | &nx, |
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231 | &ny, |
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232 | &npol, |
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233 | &nchan, |
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234 | &support, |
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235 | &sampling, |
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236 | conv_p, |
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237 | chanMap, |
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238 | polMap, |
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239 | sumw_p ) ; |
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240 | |
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241 | // finalization |
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242 | xypos.putStorage( xy_p, deletePos ) ; |
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243 | spectra.freeStorage( values_p, deleteData ) ; |
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244 | flagtra.freeStorage( flag_p, deleteFlag ) ; |
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245 | flagrow.freeStorage( rflag_p, deleteFlagR ) ; |
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246 | weight.freeStorage( wgt_p, deleteWgt ) ; |
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247 | gdata.putStorage( grid_p, deleteDataG ) ; |
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248 | gwgt.putStorage( wgrid_p, deleteWgtG ) ; |
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249 | convFunc.putStorage( conv_p, deleteConv ) ; |
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250 | delete sumw_p ; |
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251 | } |
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252 | |
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253 | |
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254 | void STGrid::grid() |
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255 | { |
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256 | LogIO os( LogOrigin("STGrid", "grid", WHERE) ) ; |
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257 | double t0,t1 ; |
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258 | |
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259 | // data selection |
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260 | t0 = mathutil::gettimeofday_sec() ; |
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261 | selectData() ; |
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262 | t1 = mathutil::gettimeofday_sec() ; |
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263 | os << "selectData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ; |
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264 | |
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265 | setupGrid() ; |
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266 | setupArray() ; |
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267 | |
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268 | if ( wtype_.compare("UNIFORM") != 0 && |
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269 | wtype_.compare("TINT") != 0 && |
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270 | wtype_.compare("TSYS") != 0 && |
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271 | wtype_.compare("TINTSYS") != 0 ) { |
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272 | LogIO os( LogOrigin("STGrid", "grid", WHERE) ) ; |
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273 | os << LogIO::WARN << "Unsupported weight type '" << wtype_ << "', apply UNIFORM weight" << LogIO::POST ; |
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274 | wtype_ = "UNIFORM" ; |
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275 | } |
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276 | |
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277 | // grid parameter |
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278 | os << LogIO::DEBUGGING ; |
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279 | os << "----------" << endl ; |
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280 | os << "Data selection summary" << endl ; |
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281 | os << " ifno = " << ifno_ << endl ; |
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282 | os << " pollist = " << pollist_ << endl ; |
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283 | os << " scanlist = " << scanlist_ << endl ; |
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284 | os << "----------" << endl ; |
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285 | os << "Grid parameter summary" << endl ; |
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286 | os << " (nx,ny) = (" << nx_ << "," << ny_ << ")" << endl ; |
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287 | os << " (cellx,celly) = (" << cellx_ << "," << celly_ << ")" << endl ; |
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288 | os << " center = " << center_ << endl ; |
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289 | os << " weighting = " << wtype_ << endl ; |
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290 | os << " convfunc = " << convType_ << " with support " << convSupport_ << endl ; |
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291 | os << "----------" << LogIO::POST ; |
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292 | os << LogIO::NORMAL ; |
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293 | |
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294 | Bool doAll = examine() ; |
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295 | |
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296 | if ( doAll ) |
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297 | gridPerPol() ; |
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298 | else |
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299 | gridPerRow() ; |
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300 | } |
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301 | |
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302 | Bool STGrid::examine() |
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303 | { |
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304 | // TODO: nchunk_ must be determined from nchan_, npol_, and (nx_,ny_) |
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305 | // by considering data size to be allocated for ggridsd input/output |
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306 | nchunk_ = 400 ; |
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307 | Bool b = nchunk_ >= nrow_ ; |
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308 | nchunk_ = min( nchunk_, nrow_ ) ; |
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309 | vshape_ = IPosition( 1, nchunk_ ) ; |
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310 | wshape_ = IPosition( 2, nchan_, nchunk_ ) ; |
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311 | dshape_ = IPosition( 2, 2, nchunk_ ) ; |
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312 | return b ; |
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313 | } |
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314 | |
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315 | struct STGChunk { |
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316 | Int nrow ; |
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317 | Array<Complex> spectra; |
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318 | Array<Int> flagtra; |
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319 | Array<Int> rflag; |
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320 | Array<Float> weight; |
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321 | Array<Double> direction; |
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322 | STGChunk(IPosition const &wshape, IPosition const &vshape, |
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323 | IPosition const &dshape) |
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324 | : spectra(wshape), flagtra(wshape), rflag(vshape), weight(wshape), |
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325 | direction(dshape) |
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326 | { } |
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327 | }; |
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328 | |
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329 | struct STCommonData { |
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330 | Int gnx; |
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331 | Int gny; |
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332 | Int *chanMap; |
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333 | Vector<Float> convFunc ; |
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334 | Array<Complex> gdataArrC; |
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335 | Array<Float> gwgtArr; |
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336 | STCommonData(IPosition const &gshape, Array<Float> const &data) |
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337 | : gdataArrC(gshape, 0.0), gwgtArr(data) {} |
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338 | }; |
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339 | |
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340 | #define DO_AHEAD 3 |
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341 | |
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342 | struct STContext { |
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343 | STCommonData &common; |
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344 | FIFO<STGChunk *, DO_AHEAD> queue; |
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345 | STGrid *const self; |
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346 | const Int pol; |
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347 | STContext(STGrid *obj, STCommonData &common, Int pol) |
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348 | : self(obj), common(common), pol(pol) {} |
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349 | }; |
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350 | |
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351 | |
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352 | bool STGrid::produceChunk(void *ctx) throw(PCException) |
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353 | { |
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354 | STContext &context = *(STContext *)ctx; |
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355 | if ( context.self->nprocessed_ >= context.self->nrow_ ) { |
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356 | return false; |
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357 | } |
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358 | STGChunk *chunk = new STGChunk(context.self->wshape_, |
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359 | context.self->vshape_, |
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360 | context.self->dshape_); |
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361 | |
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362 | double t0 = mathutil::gettimeofday_sec() ; |
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363 | chunk->nrow = context.self->getDataChunk( |
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364 | context.self->wshape_, context.self->vshape_, context.self->dshape_, |
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365 | chunk->spectra, chunk->direction, |
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366 | chunk->flagtra, chunk->rflag, chunk->weight); |
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367 | double t1 = mathutil::gettimeofday_sec() ; |
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368 | context.self->eGetData_ += t1-t0 ; |
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369 | |
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370 | context.queue.lock(); |
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371 | context.queue.put(chunk); |
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372 | context.queue.unlock(); |
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373 | return true; |
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374 | } |
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375 | |
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376 | void STGrid::consumeChunk(void *ctx) throw(PCException) |
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377 | { |
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378 | STContext &context = *(STContext *)ctx; |
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379 | STGChunk *chunk = NULL; |
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380 | try { |
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381 | context.queue.lock(); |
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382 | chunk = context.queue.get(); |
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383 | context.queue.unlock(); |
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384 | } catch (FullException &e) { |
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385 | context.queue.unlock(); |
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386 | // TODO: log error |
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387 | throw PCException(); |
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388 | } |
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389 | |
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390 | double t0, t1 ; |
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391 | // world -> pixel |
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392 | Array<Double> xypos( context.self->dshape_ ) ; |
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393 | t0 = mathutil::gettimeofday_sec() ; |
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394 | context.self->toPixel( chunk->direction, xypos ) ; |
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395 | t1 = mathutil::gettimeofday_sec() ; |
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396 | context.self->eToPixel_ += t1-t0 ; |
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397 | |
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398 | // call ggridsd |
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399 | Int nvispol = 1 ; |
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400 | Int irow = -1 ; |
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401 | t0 = mathutil::gettimeofday_sec() ; |
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402 | context.self->call_ggridsd( xypos, |
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403 | chunk->spectra, |
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404 | nvispol, |
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405 | context.self->nchan_, |
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406 | chunk->flagtra, |
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407 | chunk->rflag, |
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408 | chunk->weight, |
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409 | chunk->nrow, |
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410 | irow, |
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411 | context.common.gdataArrC, |
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412 | context.common.gwgtArr, |
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413 | context.common.gnx, |
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414 | context.common.gny, |
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415 | context.self->npol_, |
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416 | context.self->nchan_, |
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417 | context.self->convSupport_, |
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418 | context.self->convSampling_, |
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419 | context.common.convFunc, |
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420 | context.common.chanMap, |
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421 | (Int*)&context.pol ) ; |
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422 | t1 = mathutil::gettimeofday_sec() ; |
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423 | context.self->eGGridSD_ += t1-t0 ; |
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424 | |
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425 | delete chunk; |
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426 | } |
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427 | |
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428 | void STGrid::gridPerRow() |
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429 | { |
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430 | LogIO os( LogOrigin("STGrid", "gridPerRow", WHERE) ) ; |
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431 | double t0, t1 ; |
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432 | |
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433 | |
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434 | // grid data |
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435 | // Extend grid plane with convSupport_ |
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436 | // Int gnx = nx_+convSupport_*2 ; |
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437 | // Int gny = ny_+convSupport_*2 ; |
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438 | Int gnx = nx_; |
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439 | Int gny = ny_; |
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440 | |
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441 | IPosition gshape( 4, gnx, gny, npol_, nchan_ ) ; |
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442 | // 2011/12/20 TN |
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443 | // data_ and gwgtArr share storage |
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444 | data_.resize( gshape ) ; |
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445 | data_ = 0.0 ; |
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446 | STCommonData common = STCommonData(gshape, data_); |
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447 | common.gnx = gnx ; |
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448 | common.gny = gny ; |
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449 | |
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450 | // parameters for gridding |
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451 | Int *chanMap = new Int[nchan_] ; |
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452 | for ( Int i = 0 ; i < nchan_ ; i++ ) { |
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453 | chanMap[i] = i ; |
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454 | } |
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455 | common.chanMap = chanMap; |
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456 | |
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457 | // convolution kernel |
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458 | t0 = mathutil::gettimeofday_sec() ; |
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459 | setConvFunc( common.convFunc ) ; |
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460 | t1 = mathutil::gettimeofday_sec() ; |
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461 | os << "setConvFunc: elapsed time is " << t1-t0 << " sec." << LogIO::POST ; |
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462 | |
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463 | // for performance check |
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464 | eGetData_ = 0.0 ; |
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465 | eToPixel_ = 0.0 ; |
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466 | eGGridSD_ = 0.0 ; |
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467 | double eInitPol = 0.0 ; |
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468 | |
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469 | Broker broker = Broker(produceChunk, consumeChunk); |
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470 | for ( uInt ifile = 0 ; ifile < nfile_ ; ifile++ ) { |
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471 | initTable( ifile ) ; |
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472 | |
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473 | os << "start table " << ifile << ": " << infileList_[ifile] << LogIO::POST ; |
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474 | for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) { |
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475 | t0 = mathutil::gettimeofday_sec() ; |
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476 | initPol( ipol ) ; // set ptab_ and attach() |
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477 | t1 = mathutil::gettimeofday_sec() ; |
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478 | eInitPol += t1-t0 ; |
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479 | |
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480 | STContext context(this, common, ipol); |
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481 | |
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482 | os << "start pol " << ipol << LogIO::POST ; |
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483 | |
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484 | nprocessed_ = 0 ; |
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485 | #if 1 |
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486 | broker.runProducerAsMasterThread(&context, DO_AHEAD); |
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487 | #else |
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488 | for (;;) { |
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489 | bool produced = produceChunk(&context); |
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490 | if (! produced) { |
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491 | break; |
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492 | } |
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493 | consumeChunk(&context); |
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494 | } |
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495 | #endif |
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496 | |
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497 | os << "end pol " << ipol << LogIO::POST ; |
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498 | |
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499 | } |
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500 | os << "end table " << ifile << LogIO::POST ; |
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501 | } |
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502 | os << "initPol: elapsed time is " << eInitPol << " sec." << LogIO::POST ; |
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503 | os << "getData: elapsed time is " << eGetData_-eToInt-eGetWeight << " sec." << LogIO::POST ; |
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504 | os << "toPixel: elapsed time is " << eToPixel_ << " sec." << LogIO::POST ; |
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505 | os << "ggridsd: elapsed time is " << eGGridSD_ << " sec." << LogIO::POST ; |
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506 | os << "toInt: elapsed time is " << eToInt << " sec." << LogIO::POST ; |
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507 | os << "getWeight: elapsed time is " << eGetWeight << " sec." << LogIO::POST ; |
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508 | |
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509 | delete chanMap ; |
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510 | |
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511 | // set data |
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512 | setData( common.gdataArrC, common.gwgtArr ) ; |
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513 | |
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514 | } |
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515 | |
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516 | void STGrid::gridPerPol() |
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517 | { |
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518 | LogIO os( LogOrigin("STGrid", "gridPerPol", WHERE) ) ; |
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519 | double t0, t1 ; |
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520 | |
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521 | // convolution kernel |
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522 | Vector<Float> convFunc ; |
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523 | t0 = mathutil::gettimeofday_sec() ; |
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524 | setConvFunc( convFunc ) ; |
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525 | t1 = mathutil::gettimeofday_sec() ; |
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526 | os << "setConvFunc: elapsed time is " << t1-t0 << " sec." << LogIO::POST ; |
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527 | |
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528 | // prepare grid data storage |
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529 | Int gnx = nx_ ; |
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530 | Int gny = ny_ ; |
---|
531 | // // Extend grid plane with convSupport_ |
---|
532 | // Int gnx = nx_+convSupport_*2 ; |
---|
533 | // Int gny = ny_+convSupport_*2 ; |
---|
534 | IPosition gshape( 4, gnx, gny, npol_, nchan_ ) ; |
---|
535 | Array<Complex> gdataArrC( gshape, 0.0 ) ; |
---|
536 | //Array<Float> gwgtArr( gshape, 0.0 ) ; |
---|
537 | // 2011/12/20 TN |
---|
538 | // data_ and weight array shares storage |
---|
539 | data_.resize( gshape ) ; |
---|
540 | data_ = 0.0 ; |
---|
541 | Array<Float> gwgtArr( data_ ) ; |
---|
542 | |
---|
543 | // maps |
---|
544 | Int *chanMap = new Int[nchan_] ; |
---|
545 | { |
---|
546 | Int *work_p = chanMap ; |
---|
547 | for ( Int i = 0 ; i < nchan_ ; i++ ) { |
---|
548 | *work_p = i ; |
---|
549 | work_p++ ; |
---|
550 | } |
---|
551 | } |
---|
552 | Int polMap[1] ; |
---|
553 | |
---|
554 | // some parameters for ggridsd |
---|
555 | Int nvispol = 1 ; |
---|
556 | Int irow = -1 ; |
---|
557 | |
---|
558 | // for performance check |
---|
559 | double eInitPol = 0.0 ; |
---|
560 | double eGetData = 0.0 ; |
---|
561 | double eToPixel = 0.0 ; |
---|
562 | double eGGridSD = 0.0 ; |
---|
563 | double eToInt = 0.0 ; |
---|
564 | |
---|
565 | for ( uInt ifile = 0 ; ifile < nfile_ ; ifile++ ) { |
---|
566 | initTable( ifile ) ; |
---|
567 | |
---|
568 | os << "start table " << ifile << ": " << infileList_[ifile] << LogIO::POST ; |
---|
569 | // to read data from the table |
---|
570 | IPosition mshape( 2, nchan_, nrow_ ) ; |
---|
571 | IPosition dshape( 2, 2, nrow_ ) ; |
---|
572 | Array<Complex> spectra( mshape ) ; |
---|
573 | Array<Double> direction( dshape ) ; |
---|
574 | Array<Int> flagtra( mshape ) ; |
---|
575 | Array<Int> rflag( IPosition(1,nrow_) ) ; |
---|
576 | Array<Float> weight( mshape ) ; |
---|
577 | Array<Double> xypos( dshape ) ; |
---|
578 | |
---|
579 | for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) { |
---|
580 | t0 = mathutil::gettimeofday_sec() ; |
---|
581 | initPol( ipol ) ; |
---|
582 | t1 = mathutil::gettimeofday_sec() ; |
---|
583 | eInitPol += t1-t0 ; |
---|
584 | |
---|
585 | os << "start pol " << ipol << LogIO::POST ; |
---|
586 | |
---|
587 | // retrieve data |
---|
588 | t0 = mathutil::gettimeofday_sec() ; |
---|
589 | getDataPerPol( spectra, direction, flagtra, rflag, weight ) ; |
---|
590 | t1 = mathutil::gettimeofday_sec() ; |
---|
591 | eGetData += t1-t0 ; |
---|
592 | |
---|
593 | // world -> pixel |
---|
594 | t0 = mathutil::gettimeofday_sec() ; |
---|
595 | toPixel( direction, xypos ) ; |
---|
596 | t1 = mathutil::gettimeofday_sec() ; |
---|
597 | eToPixel += t1-t0 ; |
---|
598 | |
---|
599 | // call ggridsd |
---|
600 | polMap[0] = ipol ; |
---|
601 | t0 = mathutil::gettimeofday_sec() ; |
---|
602 | call_ggridsd( xypos, |
---|
603 | spectra, |
---|
604 | nvispol, |
---|
605 | nchan_, |
---|
606 | flagtra, |
---|
607 | rflag, |
---|
608 | weight, |
---|
609 | nrow_, |
---|
610 | irow, |
---|
611 | gdataArrC, |
---|
612 | gwgtArr, |
---|
613 | gnx, |
---|
614 | gny, |
---|
615 | npol_, |
---|
616 | nchan_, |
---|
617 | convSupport_, |
---|
618 | convSampling_, |
---|
619 | convFunc, |
---|
620 | chanMap, |
---|
621 | polMap ) ; |
---|
622 | t1 = mathutil::gettimeofday_sec() ; |
---|
623 | eGGridSD += t1-t0 ; |
---|
624 | |
---|
625 | os << "end pol " << ipol << LogIO::POST ; |
---|
626 | |
---|
627 | } |
---|
628 | os << "end table " << ifile << LogIO::POST ; |
---|
629 | } |
---|
630 | os << "initPol: elapsed time is " << eInitPol << " sec." << LogIO::POST ; |
---|
631 | os << "getData: elapsed time is " << eGetData-eToInt-eGetWeight << " sec." << LogIO::POST ; |
---|
632 | os << "toPixel: elapsed time is " << eToPixel << " sec." << LogIO::POST ; |
---|
633 | os << "ggridsd: elapsed time is " << eGGridSD << " sec." << LogIO::POST ; |
---|
634 | os << "toInt: elapsed time is " << eToInt << " sec." << LogIO::POST ; |
---|
635 | os << "getWeight: elapsed time is " << eGetWeight << " sec." << LogIO::POST ; |
---|
636 | |
---|
637 | // delete maps |
---|
638 | delete chanMap ; |
---|
639 | |
---|
640 | setData( gdataArrC, gwgtArr ) ; |
---|
641 | // os << "gdataArr = " << gdataArr << LogIO::POST ; |
---|
642 | // os << "gwgtArr = " << gwgtArr << LogIO::POST ; |
---|
643 | // os << "data_ " << data_ << LogIO::POST ; |
---|
644 | } |
---|
645 | |
---|
646 | void STGrid::initPol( Int ipol ) |
---|
647 | { |
---|
648 | LogIO os( LogOrigin("STGrid","initPol",WHERE) ) ; |
---|
649 | if ( npolOrg_ == 1 ) { |
---|
650 | os << "single polarization data." << LogIO::POST ; |
---|
651 | ptab_ = tab_ ; |
---|
652 | } |
---|
653 | else |
---|
654 | ptab_ = tab_( tab_.col("POLNO") == (uInt)ipol ) ; |
---|
655 | |
---|
656 | attach( ptab_ ) ; |
---|
657 | } |
---|
658 | |
---|
659 | void STGrid::initTable( uInt idx ) |
---|
660 | { |
---|
661 | tab_ = tableList_[idx] ; |
---|
662 | nrow_ = rows_[idx] ; |
---|
663 | } |
---|
664 | |
---|
665 | void STGrid::setData( Array<Complex> &gdata, |
---|
666 | Array<Float> &gwgt ) |
---|
667 | { |
---|
668 | // 2011/12/20 TN |
---|
669 | // gwgt and data_ share storage |
---|
670 | LogIO os( LogOrigin("STGrid","setData",WHERE) ) ; |
---|
671 | double t0, t1 ; |
---|
672 | t0 = mathutil::gettimeofday_sec() ; |
---|
673 | uInt len = data_.nelements() ; |
---|
674 | const Complex *w1_p ; |
---|
675 | Float *w2_p ; |
---|
676 | Bool b1, b2 ; |
---|
677 | const Complex *gdata_p = gdata.getStorage( b1 ) ; |
---|
678 | Float *gwgt_p = data_.getStorage( b2 ) ; |
---|
679 | w1_p = gdata_p ; |
---|
680 | w2_p = gwgt_p ; |
---|
681 | for ( uInt i = 0 ; i < len ; i++ ) { |
---|
682 | if ( *w2_p > 0.0 ) *w2_p = (*w1_p).real() / *w2_p ; |
---|
683 | w1_p++ ; |
---|
684 | w2_p++ ; |
---|
685 | } |
---|
686 | gdata.freeStorage( gdata_p, b1 ) ; |
---|
687 | data_.putStorage( gwgt_p, b2 ) ; |
---|
688 | t1 = mathutil::gettimeofday_sec() ; |
---|
689 | os << "setData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ; |
---|
690 | } |
---|
691 | |
---|
692 | void STGrid::setupGrid() |
---|
693 | { |
---|
694 | Double xmin,xmax,ymin,ymax ; |
---|
695 | mapExtent( xmin, xmax, ymin, ymax ) ; |
---|
696 | |
---|
697 | setupGrid( nxUI_, nyUI_, cellxUI_, cellyUI_, |
---|
698 | xmin, xmax, ymin, ymax, centerUI_ ) ; |
---|
699 | } |
---|
700 | |
---|
701 | void STGrid::setupGrid( Int &nx, |
---|
702 | Int &ny, |
---|
703 | String &cellx, |
---|
704 | String &celly, |
---|
705 | Double &xmin, |
---|
706 | Double &xmax, |
---|
707 | Double &ymin, |
---|
708 | Double &ymax, |
---|
709 | String ¢er ) |
---|
710 | { |
---|
711 | LogIO os( LogOrigin("STGrid","setupGrid",WHERE) ) ; |
---|
712 | //cout << "nx=" << nx << ", ny=" << ny << endl ; |
---|
713 | |
---|
714 | // center position |
---|
715 | if ( center.size() == 0 ) { |
---|
716 | center_(0) = 0.5 * ( xmin + xmax ) ; |
---|
717 | center_(1) = 0.5 * ( ymin + ymax ) ; |
---|
718 | } |
---|
719 | else { |
---|
720 | String::size_type pos0 = center.find( " " ) ; |
---|
721 | if ( pos0 == String::npos ) { |
---|
722 | throw AipsError( "bad string format in parameter center" ) ; |
---|
723 | } |
---|
724 | String::size_type pos1 = center.find( " ", pos0+1 ) ; |
---|
725 | String typestr, xstr, ystr ; |
---|
726 | if ( pos1 != String::npos ) { |
---|
727 | typestr = center.substr( 0, pos0 ) ; |
---|
728 | xstr = center.substr( pos0+1, pos1-pos0 ) ; |
---|
729 | ystr = center.substr( pos1+1 ) ; |
---|
730 | // todo: convert to J2000 (or direction ref for DIRECTION column) |
---|
731 | } |
---|
732 | else { |
---|
733 | typestr = "J2000" ; |
---|
734 | xstr = center.substr( 0, pos0 ) ; |
---|
735 | ystr = center.substr( pos0+1 ) ; |
---|
736 | } |
---|
737 | QuantumHolder qh ; |
---|
738 | String err ; |
---|
739 | qh.fromString( err, xstr ) ; |
---|
740 | Quantum<Double> xcen = qh.asQuantumDouble() ; |
---|
741 | qh.fromString( err, ystr ) ; |
---|
742 | Quantum<Double> ycen = qh.asQuantumDouble() ; |
---|
743 | center_(0) = xcen.getValue( "rad" ) ; |
---|
744 | center_(1) = ycen.getValue( "rad" ) ; |
---|
745 | } |
---|
746 | |
---|
747 | |
---|
748 | nx_ = nx ; |
---|
749 | ny_ = ny ; |
---|
750 | if ( nx < 0 && ny > 0 ) { |
---|
751 | nx_ = ny ; |
---|
752 | ny_ = ny ; |
---|
753 | } |
---|
754 | if ( ny < 0 && nx > 0 ) { |
---|
755 | nx_ = nx ; |
---|
756 | ny_ = nx ; |
---|
757 | } |
---|
758 | |
---|
759 | //Double wx = xmax - xmin ; |
---|
760 | //Double wy = ymax - ymin ; |
---|
761 | Double wx = max( abs(xmax-center_(0)), abs(xmin-center_(0)) ) * 2 ; |
---|
762 | Double wy = max( abs(ymax-center_(1)), abs(ymin-center_(1)) ) * 2 ; |
---|
763 | // take 10% margin |
---|
764 | wx *= 1.10 ; |
---|
765 | wy *= 1.10 ; |
---|
766 | |
---|
767 | Quantum<Double> qcellx ; |
---|
768 | Quantum<Double> qcelly ; |
---|
769 | //cout << "nx_ = " << nx_ << ", ny_ = " << ny_ << endl ; |
---|
770 | if ( cellx.size() != 0 && celly.size() != 0 ) { |
---|
771 | readQuantity( qcellx, cellx ) ; |
---|
772 | readQuantity( qcelly, celly ) ; |
---|
773 | } |
---|
774 | else if ( celly.size() != 0 ) { |
---|
775 | os << "Using celly to x-axis..." << LogIO::POST ; |
---|
776 | readQuantity( qcelly, celly ) ; |
---|
777 | qcellx = qcelly ; |
---|
778 | } |
---|
779 | else if ( cellx.size() != 0 ) { |
---|
780 | os << "Using cellx to y-axis..." << LogIO::POST ; |
---|
781 | readQuantity( qcellx, cellx ) ; |
---|
782 | qcelly = qcellx ; |
---|
783 | } |
---|
784 | else { |
---|
785 | if ( nx_ < 0 ) { |
---|
786 | os << "No user preference in grid setting. Using default..." << LogIO::POST ; |
---|
787 | readQuantity( qcellx, "1.0arcmin" ) ; |
---|
788 | qcelly = qcellx ; |
---|
789 | } |
---|
790 | else { |
---|
791 | if ( wx == 0.0 ) { |
---|
792 | os << "Using default spatial extent (10arcmin) in x" << LogIO::POST ; |
---|
793 | wx = 0.00290888 ; |
---|
794 | } |
---|
795 | if ( wy == 0.0 ) { |
---|
796 | os << "Using default spatial extent (10arcmin) in y" << LogIO::POST ; |
---|
797 | wy = 0.00290888 ; |
---|
798 | } |
---|
799 | qcellx = Quantum<Double>( wx/nx_, "rad" ) ; |
---|
800 | qcelly = Quantum<Double>( wy/ny_, "rad" ) ; |
---|
801 | } |
---|
802 | } |
---|
803 | cellx_ = qcellx.getValue( "rad" ) ; |
---|
804 | celly_ = qcelly.getValue( "rad" ) ; |
---|
805 | if ( nx_ < 0 ) { |
---|
806 | if ( wx == 0.0 ) { |
---|
807 | os << "Using default spatial extent (10arcmin) in x" << LogIO::POST ; |
---|
808 | wx = 0.00290888 ; |
---|
809 | } |
---|
810 | if ( wy == 0.0 ) { |
---|
811 | os << "Using default spatial extent (10arcmin) in y" << LogIO::POST ; |
---|
812 | wy = 0.00290888 ; |
---|
813 | } |
---|
814 | nx_ = Int( ceil( wx/cellx_ ) ) ; |
---|
815 | ny_ = Int( ceil( wy/celly_ ) ) ; |
---|
816 | } |
---|
817 | } |
---|
818 | |
---|
819 | void STGrid::mapExtent( Double &xmin, Double &xmax, |
---|
820 | Double &ymin, Double &ymax ) |
---|
821 | { |
---|
822 | //LogIO os( LogOrigin("STGrid","mapExtent",WHERE) ) ; |
---|
823 | directionCol_.attach( tableList_[0], "DIRECTION" ) ; |
---|
824 | Matrix<Double> direction = directionCol_.getColumn() ; |
---|
825 | //os << "dirCol.nrow() = " << dirCol.nrow() << LogIO::POST ; |
---|
826 | minMax( xmin, xmax, direction.row( 0 ) ) ; |
---|
827 | minMax( ymin, ymax, direction.row( 1 ) ) ; |
---|
828 | Double amin, amax, bmin, bmax ; |
---|
829 | for ( uInt i = 1 ; i < nfile_ ; i++ ) { |
---|
830 | directionCol_.attach( tableList_[i], "DIRECTION" ) ; |
---|
831 | direction.assign( directionCol_.getColumn() ) ; |
---|
832 | //os << "dirCol.nrow() = " << dirCol.nrow() << LogIO::POST ; |
---|
833 | minMax( amin, amax, direction.row( 0 ) ) ; |
---|
834 | minMax( bmin, bmax, direction.row( 1 ) ) ; |
---|
835 | xmin = min( xmin, amin ) ; |
---|
836 | xmax = max( xmax, amax ) ; |
---|
837 | ymin = min( ymin, bmin ) ; |
---|
838 | ymax = max( ymax, bmax ) ; |
---|
839 | } |
---|
840 | //os << "(xmin,xmax)=(" << xmin << "," << xmax << ")" << LogIO::POST ; |
---|
841 | //os << "(ymin,ymax)=(" << ymin << "," << ymax << ")" << LogIO::POST ; |
---|
842 | } |
---|
843 | |
---|
844 | void STGrid::selectData() |
---|
845 | { |
---|
846 | LogIO os( LogOrigin("STGrid","selectData",WHERE) ) ; |
---|
847 | Int ifno = ifno_ ; |
---|
848 | tableList_.resize( nfile_ ) ; |
---|
849 | if ( ifno == -1 ) { |
---|
850 | Table taborg( infileList_[0] ) ; |
---|
851 | ROScalarColumn<uInt> ifnoCol( taborg, "IFNO" ) ; |
---|
852 | ifno = ifnoCol( 0 ) ; |
---|
853 | os << LogIO::WARN |
---|
854 | << "IFNO is not given. Using default IFNO: " << ifno << LogIO::POST ; |
---|
855 | } |
---|
856 | for ( uInt i = 0 ; i < nfile_ ; i++ ) { |
---|
857 | Table taborg( infileList_[i] ) ; |
---|
858 | TableExprNode node ; |
---|
859 | if ( isMultiIF( taborg ) ) { |
---|
860 | os << "apply selection on IFNO" << LogIO::POST ; |
---|
861 | node = taborg.col("IFNO") == ifno ; |
---|
862 | } |
---|
863 | if ( scanlist_.size() > 0 ) { |
---|
864 | os << "apply selection on SCANNO" << LogIO::POST ; |
---|
865 | node = node && taborg.col("SCANNO").in( scanlist_ ) ; |
---|
866 | } |
---|
867 | if ( node.isNull() ) { |
---|
868 | tableList_[i] = taborg ; |
---|
869 | } |
---|
870 | else { |
---|
871 | tableList_[i] = taborg( node ) ; |
---|
872 | } |
---|
873 | os << "tableList_[" << i << "].nrow()=" << tableList_[i].nrow() << LogIO::POST ; |
---|
874 | if ( tableList_[i].nrow() == 0 ) { |
---|
875 | os << LogIO::SEVERE |
---|
876 | << "No corresponding rows for given selection: IFNO " << ifno ; |
---|
877 | if ( scanlist_.size() > 0 ) |
---|
878 | os << " SCANNO " << scanlist_ ; |
---|
879 | os << LogIO::EXCEPTION ; |
---|
880 | } |
---|
881 | } |
---|
882 | } |
---|
883 | |
---|
884 | Bool STGrid::isMultiIF( Table &tab ) |
---|
885 | { |
---|
886 | ROScalarColumn<uInt> ifnoCol( tab, "IFNO" ) ; |
---|
887 | Vector<uInt> ifnos = ifnoCol.getColumn() ; |
---|
888 | return anyNE( ifnos, ifnos[0] ) ; |
---|
889 | } |
---|
890 | |
---|
891 | void STGrid::attach( Table &tab ) |
---|
892 | { |
---|
893 | // attach to table |
---|
894 | spectraCol_.attach( tab, "SPECTRA" ) ; |
---|
895 | flagtraCol_.attach( tab, "FLAGTRA" ) ; |
---|
896 | directionCol_.attach( tab, "DIRECTION" ) ; |
---|
897 | flagRowCol_.attach( tab, "FLAGROW" ) ; |
---|
898 | tsysCol_.attach( tab, "TSYS" ) ; |
---|
899 | intervalCol_.attach( tab, "INTERVAL" ) ; |
---|
900 | } |
---|
901 | |
---|
902 | void STGrid::getDataPerPol( Array<Float> &spectra, |
---|
903 | Array<Double> &direction, |
---|
904 | Array<uChar> &flagtra, |
---|
905 | Array<uInt> &rflag, |
---|
906 | Array<Float> &weight ) |
---|
907 | { |
---|
908 | LogIO os( LogOrigin("STGrid","getDataPerPol",WHERE) ) ; |
---|
909 | |
---|
910 | // 2011/12/22 TN |
---|
911 | // weight and tsys shares its storage |
---|
912 | Array<Float> tsys( weight ) ; |
---|
913 | Array<Double> tint( rflag.shape() ) ; |
---|
914 | |
---|
915 | Vector<uInt> rflagVec( rflag ) ; |
---|
916 | Vector<Double> tintVec( tint ) ; |
---|
917 | |
---|
918 | spectraCol_.getColumn( spectra ) ; |
---|
919 | flagtraCol_.getColumn( flagtra ) ; |
---|
920 | flagRowCol_.getColumn( rflagVec ) ; |
---|
921 | directionCol_.getColumn( direction ) ; |
---|
922 | intervalCol_.getColumn( tintVec ) ; |
---|
923 | Vector<Float> tsysTemp = tsysCol_( 0 ) ; |
---|
924 | if ( tsysTemp.nelements() == (uInt)nchan_ ) { |
---|
925 | tsysCol_.getColumn( tsys ) ; |
---|
926 | } |
---|
927 | else { |
---|
928 | tsys = tsysTemp[0] ; |
---|
929 | } |
---|
930 | |
---|
931 | double t0,t1 ; |
---|
932 | t0 = mathutil::gettimeofday_sec() ; |
---|
933 | getWeight( weight, tsys, tint ) ; |
---|
934 | t1 = mathutil::gettimeofday_sec() ; |
---|
935 | eGetWeight += t1-t0 ; |
---|
936 | } |
---|
937 | |
---|
938 | void STGrid::getDataPerPol( Array<Complex> &spectra, |
---|
939 | Array<Double> &direction, |
---|
940 | Array<Int> &flagtra, |
---|
941 | Array<Int> &rflag, |
---|
942 | Array<Float> &weight ) |
---|
943 | { |
---|
944 | LogIO os( LogOrigin("STGrid","getDataPerPol",WHERE) ) ; |
---|
945 | double t0, t1 ; |
---|
946 | |
---|
947 | Array<uChar> flagUC( flagtra.shape() ) ; |
---|
948 | Array<uInt> rflagUI( rflag.shape() ) ; |
---|
949 | Array<Float> spectraF( spectra.shape() ) ; |
---|
950 | getDataPerPol( spectraF, direction, flagUC, rflagUI, weight ) ; |
---|
951 | |
---|
952 | convertArray( spectra, spectraF ) ; |
---|
953 | t0 = mathutil::gettimeofday_sec() ; |
---|
954 | toInt( flagUC, flagtra ) ; |
---|
955 | toInt( rflagUI, rflag ) ; |
---|
956 | t1 = mathutil::gettimeofday_sec() ; |
---|
957 | eToInt += t1-t0 ; |
---|
958 | //os << "toInt: elapsed time is " << t1-t0 << " sec." << LogIO::POST ; |
---|
959 | } |
---|
960 | |
---|
961 | Int STGrid::getDataChunk( |
---|
962 | IPosition const &wshape, |
---|
963 | IPosition const &vshape, |
---|
964 | IPosition const &dshape, |
---|
965 | Array<Complex> &spectra, |
---|
966 | Array<Double> &direction, |
---|
967 | Array<Int> &flagtra, |
---|
968 | Array<Int> &rflag, |
---|
969 | Array<Float> &weight ) |
---|
970 | { |
---|
971 | LogIO os( LogOrigin("STGrid","getDataChunk",WHERE) ) ; |
---|
972 | |
---|
973 | Array<Float> spectraF_(wshape); |
---|
974 | Array<uChar> flagtraUC_(wshape); |
---|
975 | Array<uInt> rflagUI_(vshape); |
---|
976 | Int nrow = getDataChunk( spectraF_, direction, flagtraUC_, rflagUI_, weight ) ; |
---|
977 | if ( nrow < nchunk_ ) { |
---|
978 | spectra.resize( spectraF_.shape() ) ; |
---|
979 | flagtra.resize( flagtraUC_.shape() ) ; |
---|
980 | rflag.resize( rflagUI_.shape() ) ; |
---|
981 | } |
---|
982 | double t0, t1 ; |
---|
983 | t0 = mathutil::gettimeofday_sec() ; |
---|
984 | convertArray( spectra, spectraF_ ) ; |
---|
985 | toInt( flagtraUC_, flagtra ) ; |
---|
986 | toInt( rflagUI_, rflag ) ; |
---|
987 | t1 = mathutil::gettimeofday_sec() ; |
---|
988 | eToInt = t1 - t0 ; |
---|
989 | |
---|
990 | return nrow ; |
---|
991 | } |
---|
992 | |
---|
993 | #if 0 |
---|
994 | Int STGrid::getDataChunk( Array<Complex> &spectra, |
---|
995 | Array<Double> &direction, |
---|
996 | Array<Int> &flagtra, |
---|
997 | Array<Int> &rflag, |
---|
998 | Array<Float> &weight ) |
---|
999 | { |
---|
1000 | LogIO os( LogOrigin("STGrid","getDataChunk",WHERE) ) ; |
---|
1001 | Int nrow = getDataChunk( spectraF_, direction, flagtraUC_, rflagUI_, weight ) ; |
---|
1002 | if ( nrow < nchunk_ ) { |
---|
1003 | spectra.resize( spectraF_.shape() ) ; |
---|
1004 | flagtra.resize( flagtraUC_.shape() ) ; |
---|
1005 | rflag.resize( rflagUI_.shape() ) ; |
---|
1006 | } |
---|
1007 | double t0, t1 ; |
---|
1008 | t0 = mathutil::gettimeofday_sec() ; |
---|
1009 | convertArray( spectra, spectraF_ ) ; |
---|
1010 | toInt( flagtraUC_, flagtra ) ; |
---|
1011 | toInt( rflagUI_, rflag ) ; |
---|
1012 | t1 = mathutil::gettimeofday_sec() ; |
---|
1013 | eToInt = t1 - t0 ; |
---|
1014 | |
---|
1015 | return nrow ; |
---|
1016 | } |
---|
1017 | #endif |
---|
1018 | |
---|
1019 | Int STGrid::getDataChunk( Array<Float> &spectra, |
---|
1020 | Array<Double> &direction, |
---|
1021 | Array<uChar> &flagtra, |
---|
1022 | Array<uInt> &rflag, |
---|
1023 | Array<Float> &weight ) |
---|
1024 | { |
---|
1025 | LogIO os( LogOrigin("STGrid","getDataChunk",WHERE) ) ; |
---|
1026 | Int nrow = spectra.shape()[1] ; |
---|
1027 | Int remainingRow = nrow_ - nprocessed_ ; |
---|
1028 | if ( remainingRow < nrow ) { |
---|
1029 | nrow = remainingRow ; |
---|
1030 | IPosition mshape( 2, nchan_, nrow ) ; |
---|
1031 | IPosition vshape( 1, nrow ) ; |
---|
1032 | spectra.resize( mshape ) ; |
---|
1033 | flagtra.resize( mshape ) ; |
---|
1034 | direction.resize( IPosition(2,2,nrow) ) ; |
---|
1035 | rflag.resize( vshape ) ; |
---|
1036 | weight.resize( mshape ) ; |
---|
1037 | } |
---|
1038 | // 2011/12/22 TN |
---|
1039 | // tsys shares its storage with weight |
---|
1040 | Array<Float> tsys( weight ) ; |
---|
1041 | Array<Double> tint( rflag.shape() ) ; |
---|
1042 | |
---|
1043 | Vector<uInt> rflagVec( rflag ) ; |
---|
1044 | Vector<Double> tintVec( tint ) ; |
---|
1045 | |
---|
1046 | RefRows rows( nprocessed_, nprocessed_+nrow-1, 1 ) ; |
---|
1047 | //os<<LogIO::DEBUGGING<<"nprocessed_="<<nprocessed_<<": rows.nrows()="<<rows.nrows()<<LogIO::POST ; |
---|
1048 | spectraCol_.getColumnCells( rows, spectra ) ; |
---|
1049 | flagtraCol_.getColumnCells( rows, flagtra ) ; |
---|
1050 | directionCol_.getColumnCells( rows, direction ) ; |
---|
1051 | flagRowCol_.getColumnCells( rows, rflagVec ) ; |
---|
1052 | intervalCol_.getColumnCells( rows, tintVec ) ; |
---|
1053 | Vector<Float> tsysTemp = tsysCol_( nprocessed_ ) ; |
---|
1054 | if ( tsysTemp.nelements() == (uInt)nchan_ ) |
---|
1055 | tsysCol_.getColumnCells( rows, tsys ) ; |
---|
1056 | else |
---|
1057 | tsys = tsysTemp[0] ; |
---|
1058 | |
---|
1059 | double t0,t1 ; |
---|
1060 | t0 = mathutil::gettimeofday_sec() ; |
---|
1061 | getWeight( weight, tsys, tint ) ; |
---|
1062 | t1 = mathutil::gettimeofday_sec() ; |
---|
1063 | eGetWeight += t1-t0 ; |
---|
1064 | |
---|
1065 | nprocessed_ += nrow ; |
---|
1066 | |
---|
1067 | return nrow ; |
---|
1068 | } |
---|
1069 | |
---|
1070 | void STGrid::setupArray() |
---|
1071 | { |
---|
1072 | LogIO os( LogOrigin("STGrid","setupArray",WHERE) ) ; |
---|
1073 | ROScalarColumn<uInt> polnoCol( tableList_[0], "POLNO" ) ; |
---|
1074 | Vector<uInt> pols = polnoCol.getColumn() ; |
---|
1075 | //os << pols << LogIO::POST ; |
---|
1076 | Vector<uInt> pollistOrg ; |
---|
1077 | npolOrg_ = 0 ; |
---|
1078 | uInt polno ; |
---|
1079 | for ( uInt i = 0 ; i < polnoCol.nrow() ; i++ ) { |
---|
1080 | //polno = polnoCol( i ) ; |
---|
1081 | polno = pols( i ) ; |
---|
1082 | if ( allNE( pollistOrg, polno ) ) { |
---|
1083 | pollistOrg.resize( npolOrg_+1, True ) ; |
---|
1084 | pollistOrg[npolOrg_] = polno ; |
---|
1085 | npolOrg_++ ; |
---|
1086 | } |
---|
1087 | } |
---|
1088 | if ( pollist_.size() == 0 ) |
---|
1089 | pollist_ = pollistOrg ; |
---|
1090 | else { |
---|
1091 | Vector<uInt> newlist ; |
---|
1092 | uInt newsize = 0 ; |
---|
1093 | for ( uInt i = 0 ; i < pollist_.size() ; i++ ) { |
---|
1094 | if ( anyEQ( pollistOrg, pollist_[i] ) ) { |
---|
1095 | newlist.resize( newsize+1, True ) ; |
---|
1096 | newlist[newsize] = pollist_[i] ; |
---|
1097 | newsize++ ; |
---|
1098 | } |
---|
1099 | } |
---|
1100 | pollist_.assign( newlist ) ; |
---|
1101 | } |
---|
1102 | npol_ = pollist_.size() ; |
---|
1103 | if ( npol_ == 0 ) { |
---|
1104 | os << LogIO::SEVERE << "Empty pollist" << LogIO::EXCEPTION ; |
---|
1105 | } |
---|
1106 | rows_.resize( nfile_ ) ; |
---|
1107 | for ( uInt i = 0 ; i < nfile_ ; i++ ) { |
---|
1108 | rows_[i] = tableList_[i].nrow() / npolOrg_ ; |
---|
1109 | if ( nrow_ < rows_[i] ) |
---|
1110 | nrow_ = rows_[i] ; |
---|
1111 | } |
---|
1112 | flagtraCol_.attach( tableList_[0], "FLAGTRA" ) ; |
---|
1113 | nchan_ = flagtraCol_( 0 ).nelements() ; |
---|
1114 | // os << "npol_ = " << npol_ << "(" << pollist_ << ")" << endl |
---|
1115 | // << "nchan_ = " << nchan_ << endl |
---|
1116 | // << "nrow_ = " << nrow_ << LogIO::POST ; |
---|
1117 | } |
---|
1118 | |
---|
1119 | void STGrid::getWeight( Array<Float> &w, |
---|
1120 | Array<Float> &tsys, |
---|
1121 | Array<Double> &tint ) |
---|
1122 | { |
---|
1123 | LogIO os( LogOrigin("STGrid","getWeight",WHERE) ) ; |
---|
1124 | |
---|
1125 | // 2011/12/22 TN |
---|
1126 | // w (weight) and tsys share storage |
---|
1127 | IPosition refShape = tsys.shape() ; |
---|
1128 | Int nchan = refShape[0] ; |
---|
1129 | Int nrow = refShape[1] ; |
---|
1130 | // os << "nchan=" << nchan << ", nrow=" << nrow << LogIO::POST ; |
---|
1131 | // os << "w.shape()=" << w.shape() << endl |
---|
1132 | // << "tsys.shape()=" << tsys.shape() << endl |
---|
1133 | // << "tint.shape()=" << tint.shape() << LogIO::POST ; |
---|
1134 | |
---|
1135 | // set weight |
---|
1136 | if ( wtype_.compare( "UNIFORM" ) == 0 ) { |
---|
1137 | w = 1.0 ; |
---|
1138 | } |
---|
1139 | else if ( wtype_.compare( "TINT" ) == 0 ) { |
---|
1140 | Bool b0, b1 ; |
---|
1141 | Float *w_p = w.getStorage( b0 ) ; |
---|
1142 | Float *w0_p = w_p ; |
---|
1143 | const Double *ti_p = tint.getStorage( b1 ) ; |
---|
1144 | const Double *w1_p = ti_p ; |
---|
1145 | for ( Int irow = 0 ; irow < nrow ; irow++ ) { |
---|
1146 | for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) { |
---|
1147 | *w0_p = *w1_p ; |
---|
1148 | w0_p++ ; |
---|
1149 | } |
---|
1150 | w1_p++ ; |
---|
1151 | } |
---|
1152 | w.putStorage( w_p, b0 ) ; |
---|
1153 | tint.freeStorage( ti_p, b1 ) ; |
---|
1154 | } |
---|
1155 | else if ( wtype_.compare( "TSYS" ) == 0 ) { |
---|
1156 | Bool b0 ; |
---|
1157 | Float *w_p = w.getStorage( b0 ) ; |
---|
1158 | Float *w0_p = w_p ; |
---|
1159 | for ( Int irow = 0 ; irow < nrow ; irow++ ) { |
---|
1160 | for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) { |
---|
1161 | Float temp = *w0_p ; |
---|
1162 | *w0_p = 1.0 / ( temp * temp ) ; |
---|
1163 | w0_p++ ; |
---|
1164 | } |
---|
1165 | } |
---|
1166 | w.putStorage( w_p, b0 ) ; |
---|
1167 | } |
---|
1168 | else if ( wtype_.compare( "TINTSYS" ) == 0 ) { |
---|
1169 | Bool b0, b1 ; |
---|
1170 | Float *w_p = w.getStorage( b0 ) ; |
---|
1171 | Float *w0_p = w_p ; |
---|
1172 | const Double *ti_p = tint.getStorage( b1 ) ; |
---|
1173 | const Double *w1_p = ti_p ; |
---|
1174 | for ( Int irow = 0 ; irow < nrow ; irow++ ) { |
---|
1175 | Float interval = *w1_p ; |
---|
1176 | for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) { |
---|
1177 | Float temp = *w0_p ; |
---|
1178 | *w0_p = interval / ( temp * temp ) ; |
---|
1179 | w0_p++ ; |
---|
1180 | } |
---|
1181 | w1_p++ ; |
---|
1182 | } |
---|
1183 | w.putStorage( w_p, b0 ) ; |
---|
1184 | tint.freeStorage( ti_p, b1 ) ; |
---|
1185 | } |
---|
1186 | else { |
---|
1187 | //LogIO os( LogOrigin("STGrid", "getWeight", WHERE) ) ; |
---|
1188 | //os << LogIO::WARN << "Unsupported weight type '" << wtype_ << "', apply UNIFORM weight" << LogIO::POST ; |
---|
1189 | w = 1.0 ; |
---|
1190 | } |
---|
1191 | } |
---|
1192 | |
---|
1193 | void STGrid::toInt( Array<uChar> &u, Array<Int> &v ) |
---|
1194 | { |
---|
1195 | uInt len = u.nelements() ; |
---|
1196 | Int *int_p = new Int[len] ; |
---|
1197 | Bool deleteIt ; |
---|
1198 | const uChar *data_p = u.getStorage( deleteIt ) ; |
---|
1199 | Int *i_p = int_p ; |
---|
1200 | const uChar *u_p = data_p ; |
---|
1201 | for ( uInt i = 0 ; i < len ; i++ ) { |
---|
1202 | *i_p = ( *u_p == 0 ) ? 0 : 1 ; |
---|
1203 | i_p++ ; |
---|
1204 | u_p++ ; |
---|
1205 | } |
---|
1206 | u.freeStorage( data_p, deleteIt ) ; |
---|
1207 | v.takeStorage( u.shape(), int_p, TAKE_OVER ) ; |
---|
1208 | } |
---|
1209 | |
---|
1210 | void STGrid::toInt( Array<uInt> &u, Array<Int> &v ) |
---|
1211 | { |
---|
1212 | uInt len = u.nelements() ; |
---|
1213 | Int *int_p = new Int[len] ; |
---|
1214 | Bool deleteIt ; |
---|
1215 | const uInt *data_p = u.getStorage( deleteIt ) ; |
---|
1216 | Int *i_p = int_p ; |
---|
1217 | const uInt *u_p = data_p ; |
---|
1218 | for ( uInt i = 0 ; i < len ; i++ ) { |
---|
1219 | *i_p = ( *u_p == 0 ) ? 0 : 1 ; |
---|
1220 | i_p++ ; |
---|
1221 | u_p++ ; |
---|
1222 | } |
---|
1223 | u.freeStorage( data_p, deleteIt ) ; |
---|
1224 | v.takeStorage( u.shape(), int_p, TAKE_OVER ) ; |
---|
1225 | } |
---|
1226 | |
---|
1227 | void STGrid::toPixel( Array<Double> &world, Array<Double> &pixel ) |
---|
1228 | { |
---|
1229 | // gridding will be done on (nx_+2*convSupport_) x (ny_+2*convSupport_) |
---|
1230 | // grid plane to avoid unexpected behavior on grid edge |
---|
1231 | Block<Double> pixc( 2 ) ; |
---|
1232 | pixc[0] = Double( nx_-1 ) * 0.5 ; |
---|
1233 | pixc[1] = Double( ny_-1 ) * 0.5 ; |
---|
1234 | // pixc[0] = Double( nx_+2*convSupport_-1 ) * 0.5 ; |
---|
1235 | // pixc[1] = Double( ny_+2*convSupport_-1 ) * 0.5 ; |
---|
1236 | uInt nrow = world.shape()[1] ; |
---|
1237 | Bool bw, bp ; |
---|
1238 | const Double *w_p = world.getStorage( bw ) ; |
---|
1239 | Double *p_p = pixel.getStorage( bp ) ; |
---|
1240 | const Double *ww_p = w_p ; |
---|
1241 | Double *wp_p = p_p ; |
---|
1242 | for ( uInt i = 0 ; i < nrow ; i++ ) { |
---|
1243 | *wp_p = pixc[0] + ( *ww_p - center_[0] ) / cellx_ ; |
---|
1244 | wp_p++ ; |
---|
1245 | ww_p++ ; |
---|
1246 | *wp_p = pixc[1] + ( *ww_p - center_[1] ) / celly_ ; |
---|
1247 | wp_p++ ; |
---|
1248 | ww_p++ ; |
---|
1249 | } |
---|
1250 | world.freeStorage( w_p, bw ) ; |
---|
1251 | pixel.putStorage( p_p, bp ) ; |
---|
1252 | // String gridfile = "grid."+convType_+"."+String::toString(convSupport_)+".dat" ; |
---|
1253 | // ofstream ofs( gridfile.c_str(), ios::out ) ; |
---|
1254 | // ofs << "center " << center_(0) << " " << pixc(0) |
---|
1255 | // << " " << center_(1) << " " << pixc(1) << endl ; |
---|
1256 | // for ( uInt irow = 0 ; irow < nrow ; irow++ ) { |
---|
1257 | // ofs << irow ; |
---|
1258 | // for ( uInt i = 0 ; i < 2 ; i++ ) { |
---|
1259 | // ofs << " " << world(i, irow) << " " << pixel(i, irow) ; |
---|
1260 | // } |
---|
1261 | // ofs << endl ; |
---|
1262 | // } |
---|
1263 | // ofs.close() ; |
---|
1264 | } |
---|
1265 | |
---|
1266 | void STGrid::boxFunc( Vector<Float> &convFunc, Int &convSize ) |
---|
1267 | { |
---|
1268 | convFunc = 0.0 ; |
---|
1269 | for ( Int i = 0 ; i < convSize/2 ; i++ ) |
---|
1270 | convFunc(i) = 1.0 ; |
---|
1271 | } |
---|
1272 | |
---|
1273 | #define NEED_UNDERSCORES |
---|
1274 | #if defined(NEED_UNDERSCORES) |
---|
1275 | #define grdsf grdsf_ |
---|
1276 | #endif |
---|
1277 | extern "C" { |
---|
1278 | void grdsf(Double*, Double*); |
---|
1279 | } |
---|
1280 | void STGrid::spheroidalFunc( Vector<Float> &convFunc ) |
---|
1281 | { |
---|
1282 | convFunc = 0.0 ; |
---|
1283 | for ( Int i = 0 ; i < convSampling_*convSupport_ ; i++ ) { |
---|
1284 | Double nu = Double(i) / Double(convSupport_*convSampling_) ; |
---|
1285 | Double val ; |
---|
1286 | grdsf( &nu, &val ) ; |
---|
1287 | convFunc(i) = ( 1.0 - nu * nu ) * val ; |
---|
1288 | } |
---|
1289 | } |
---|
1290 | |
---|
1291 | void STGrid::gaussFunc( Vector<Float> &convFunc ) |
---|
1292 | { |
---|
1293 | convFunc = 0.0 ; |
---|
1294 | // HWHM of the Gaussian is convSupport_ / 4 |
---|
1295 | // To take into account Gaussian tail, kernel cutoff is set to 4 * HWHM |
---|
1296 | Int len = convSampling_ * convSupport_ ; |
---|
1297 | Double hwhm = len * 0.25 ; |
---|
1298 | for ( Int i = 0 ; i < len ; i++ ) { |
---|
1299 | Double val = Double(i) / hwhm ; |
---|
1300 | convFunc(i) = exp( -log(2)*val*val ) ; |
---|
1301 | } |
---|
1302 | } |
---|
1303 | |
---|
1304 | void STGrid::pbFunc( Vector<Float> &convFunc ) |
---|
1305 | { |
---|
1306 | convFunc = 0.0 ; |
---|
1307 | } |
---|
1308 | |
---|
1309 | void STGrid::setConvFunc( Vector<Float> &convFunc ) |
---|
1310 | { |
---|
1311 | convSupport_ = userSupport_ ; |
---|
1312 | if ( convType_ == "BOX" ) { |
---|
1313 | if ( convSupport_ < 0 ) |
---|
1314 | convSupport_ = 0 ; |
---|
1315 | Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ; |
---|
1316 | convFunc.resize( convSize ) ; |
---|
1317 | boxFunc( convFunc, convSize ) ; |
---|
1318 | } |
---|
1319 | else if ( convType_ == "SF" ) { |
---|
1320 | if ( convSupport_ < 0 ) |
---|
1321 | convSupport_ = 3 ; |
---|
1322 | Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ; |
---|
1323 | convFunc.resize( convSize ) ; |
---|
1324 | spheroidalFunc( convFunc ) ; |
---|
1325 | } |
---|
1326 | else if ( convType_ == "GAUSS" ) { |
---|
1327 | // to take into account Gaussian tail |
---|
1328 | if ( convSupport_ < 0 ) |
---|
1329 | convSupport_ = 12 ; // 3 * 4 |
---|
1330 | else { |
---|
1331 | convSupport_ = userSupport_ * 4 ; |
---|
1332 | } |
---|
1333 | Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ; |
---|
1334 | convFunc.resize( convSize ) ; |
---|
1335 | gaussFunc( convFunc ) ; |
---|
1336 | } |
---|
1337 | else if ( convType_ == "PB" ) { |
---|
1338 | if ( convSupport_ < 0 ) |
---|
1339 | convSupport_ = 0 ; |
---|
1340 | pbFunc( convFunc ) ; |
---|
1341 | } |
---|
1342 | else { |
---|
1343 | throw AipsError( "Unsupported convolution function" ) ; |
---|
1344 | } |
---|
1345 | } |
---|
1346 | |
---|
1347 | string STGrid::saveData( string outfile ) |
---|
1348 | { |
---|
1349 | LogIO os( LogOrigin("STGrid", "saveData", WHERE) ) ; |
---|
1350 | double t0, t1 ; |
---|
1351 | t0 = mathutil::gettimeofday_sec() ; |
---|
1352 | |
---|
1353 | //Int polno = 0 ; |
---|
1354 | String outfile_ ; |
---|
1355 | if ( outfile.size() == 0 ) { |
---|
1356 | if ( infileList_[0].lastchar() == '/' ) { |
---|
1357 | outfile_ = infileList_[0].substr( 0, infileList_[0].size()-1 ) ; |
---|
1358 | } |
---|
1359 | else { |
---|
1360 | outfile_ = infileList_[0] ; |
---|
1361 | } |
---|
1362 | outfile_ += ".grid" ; |
---|
1363 | } |
---|
1364 | else { |
---|
1365 | outfile_ = outfile ; |
---|
1366 | } |
---|
1367 | Table tab ; |
---|
1368 | prepareTable( tab, outfile_ ) ; |
---|
1369 | IPosition dshape = data_.shape() ; |
---|
1370 | Int nrow = nx_ * ny_ * npol_ ; |
---|
1371 | tab.rwKeywordSet().define( "nPol", npol_ ) ; |
---|
1372 | tab.addRow( nrow ) ; |
---|
1373 | Vector<Double> cpix( 2 ) ; |
---|
1374 | cpix(0) = Double( nx_ - 1 ) * 0.5 ; |
---|
1375 | cpix(1) = Double( ny_ - 1 ) * 0.5 ; |
---|
1376 | Vector<Double> dir( 2 ) ; |
---|
1377 | ArrayColumn<Double> directionCol( tab, "DIRECTION" ) ; |
---|
1378 | ArrayColumn<Float> spectraCol( tab, "SPECTRA" ) ; |
---|
1379 | ScalarColumn<uInt> polnoCol( tab, "POLNO" ) ; |
---|
1380 | Int irow = 0 ; |
---|
1381 | Vector<Float> sp( nchan_ ) ; |
---|
1382 | Bool bsp, bdata ; |
---|
1383 | const Float *data_p = data_.getStorage( bdata ) ; |
---|
1384 | Float *wsp_p, *sp_p ; |
---|
1385 | const Float *wdata_p = data_p ; |
---|
1386 | long step = nx_ * ny_ * npol_ ; |
---|
1387 | long offset ; |
---|
1388 | for ( Int iy = 0 ; iy < ny_ ; iy++ ) { |
---|
1389 | dir(1) = center_(1) - ( cpix(1) - (Double)iy ) * celly_ ; |
---|
1390 | for ( Int ix = 0 ; ix < nx_ ; ix++ ) { |
---|
1391 | dir(0) = center_(0) - ( cpix(0) - (Double)ix ) * cellx_ ; |
---|
1392 | for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) { |
---|
1393 | offset = ix + iy * nx_ + ipol * nx_ * ny_ ; |
---|
1394 | //os << "offset = " << offset << LogIO::POST ; |
---|
1395 | sp_p = sp.getStorage( bsp ) ; |
---|
1396 | wsp_p = sp_p ; |
---|
1397 | wdata_p = data_p + offset ; |
---|
1398 | for ( Int ichan = 0 ; ichan < nchan_ ; ichan++ ) { |
---|
1399 | *wsp_p = *wdata_p ; |
---|
1400 | wsp_p++ ; |
---|
1401 | wdata_p += step ; |
---|
1402 | } |
---|
1403 | sp.putStorage( sp_p, bsp ) ; |
---|
1404 | spectraCol.put( irow, sp ) ; |
---|
1405 | directionCol.put( irow, dir ) ; |
---|
1406 | polnoCol.put( irow, pollist_[ipol] ) ; |
---|
1407 | irow++ ; |
---|
1408 | } |
---|
1409 | } |
---|
1410 | } |
---|
1411 | data_.freeStorage( data_p, bdata ) ; |
---|
1412 | |
---|
1413 | t1 = mathutil::gettimeofday_sec() ; |
---|
1414 | os << "saveData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ; |
---|
1415 | |
---|
1416 | return outfile_ ; |
---|
1417 | } |
---|
1418 | |
---|
1419 | void STGrid::prepareTable( Table &tab, String &name ) |
---|
1420 | { |
---|
1421 | Table t( infileList_[0], Table::Old ) ; |
---|
1422 | t.deepCopy( name, Table::New, False, t.endianFormat(), True ) ; |
---|
1423 | tab = Table( name, Table::Update ) ; |
---|
1424 | } |
---|
1425 | |
---|
1426 | } |
---|