1 | #include <iostream>
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2 | #include <fstream>
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3 |
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4 | #include <casa/BasicSL/String.h>
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5 | #include <casa/Arrays/Vector.h>
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6 | #include <casa/Arrays/Matrix.h>
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7 | #include <casa/Arrays/Cube.h>
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8 | #include <casa/Arrays/ArrayMath.h>
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9 | #include <casa/Arrays/ArrayIter.h>
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10 | #include <casa/Quanta/Quantum.h>
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11 | #include <casa/Quanta/QuantumHolder.h>
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12 | #include <casa/Utilities/CountedPtr.h>
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13 | #include <casa/Logging/LogIO.h>
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14 |
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15 | #include <tables/Tables/Table.h>
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16 | #include <tables/Tables/TableRecord.h>
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17 | #include <tables/Tables/ExprNode.h>
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18 | #include <tables/Tables/ScalarColumn.h>
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19 | #include <tables/Tables/ArrayColumn.h>
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20 | #include <tables/Tables/TableIter.h>
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21 |
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22 | #include <measures/Measures/MDirection.h>
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23 |
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24 | #include <MathUtils.h>
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25 |
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26 | #include "STGrid.h"
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27 |
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28 | using namespace std ;
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29 | using namespace casa ;
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30 | using namespace asap ;
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31 |
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32 | namespace asap {
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33 |
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34 | // for performance check
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35 | double eToInt = 0.0 ;
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36 | double eGetWeight = 0.0 ;
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37 |
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38 | // constructor
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39 | STGrid::STGrid()
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40 | {
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41 | init() ;
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42 | }
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43 |
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44 | STGrid::STGrid( const string infile )
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45 | {
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46 | init() ;
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47 |
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48 | setFileIn( infile ) ;
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49 | }
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50 |
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51 | void STGrid::init()
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52 | {
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53 | ifno_ = -1 ;
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54 | nx_ = -1 ;
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55 | ny_ = -1 ;
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56 | npol_ = 0 ;
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57 | nchan_ = 0 ;
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58 | nrow_ = 0 ;
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59 | cellx_ = 0.0 ;
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60 | celly_ = 0.0 ;
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61 | center_ = Vector<Double> ( 2, 0.0 ) ;
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62 | convType_ = "BOX" ;
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63 | wtype_ = "UNIFORM" ;
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64 | convSupport_ = -1 ;
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65 | userSupport_ = -1 ;
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66 | convSampling_ = 100 ;
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67 | nprocessed_ = 0 ;
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68 | nchunk_ = 0 ;
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69 | }
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70 |
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71 | void STGrid::setFileIn( const string infile )
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72 | {
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73 | String name( infile ) ;
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74 | if ( infile_.compare( name ) != 0 ) {
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75 | infile_ = String( infile ) ;
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76 | tab_ = Table( infile_ ) ;
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77 | }
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78 | }
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79 |
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80 | void STGrid::setPolList( vector<unsigned int> pols )
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81 | {
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82 | pollist_.assign( Vector<uInt>( pols ) ) ;
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83 | }
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84 |
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85 | void STGrid::setScanList( vector<unsigned int> scans )
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86 | {
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87 | scanlist_.assign( Vector<uInt>( scans ) ) ;
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88 | }
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89 |
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90 | void STGrid::setWeight( const string wType )
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91 | {
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92 | wtype_ = String( wType ) ;
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93 | wtype_.upcase() ;
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94 | }
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95 |
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96 | void STGrid::defineImage( int nx,
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97 | int ny,
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98 | string scellx,
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99 | string scelly,
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100 | string scenter )
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101 | {
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102 | ROArrayColumn<Double> dirCol( tab_, "DIRECTION" ) ;
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103 | Matrix<Double> direction = dirCol.getColumn() ;
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104 | Double rmax, rmin, dmax, dmin ;
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105 | minMax( rmin, rmax, direction.row( 0 ) ) ;
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106 | minMax( dmin, dmax, direction.row( 1 ) ) ;
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107 |
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108 | Int npx = (Int)nx ;
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109 | Int npy = (Int)ny ;
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110 | String cellx( scellx ) ;
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111 | String celly( scelly ) ;
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112 | String center( scenter ) ;
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113 | setupGrid( npx, npy,
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114 | cellx, celly,
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115 | rmin, rmax,
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116 | dmin, dmax,
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117 | center ) ;
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118 | }
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119 |
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120 | void STGrid::setFunc( string convType,
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121 | int convSupport )
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122 | {
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123 | convType_ = String( convType ) ;
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124 | convType_.upcase() ;
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125 | userSupport_ = (Int)convSupport ;
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126 | }
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127 |
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128 | #define NEED_UNDERSCORES
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129 | #if defined(NEED_UNDERSCORES)
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130 | #define ggridsd ggridsd_
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131 | #endif
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132 | extern "C" {
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133 | void ggridsd(Double*,
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134 | const Complex*,
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135 | Int*,
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136 | Int*,
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137 | Int*,
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138 | const Int*,
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139 | const Int*,
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140 | const Float*,
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141 | Int*,
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142 | Int*,
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143 | Complex*,
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144 | Float*,
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145 | Int*,
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146 | Int*,
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147 | Int *,
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148 | Int *,
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149 | Int*,
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150 | Int*,
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151 | Float*,
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152 | Int*,
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153 | Int*,
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154 | Double*);
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155 | }
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156 | void STGrid::call_ggridsd( Array<Double> &xypos,
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157 | Array<Complex> &spectra,
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158 | Int &nvispol,
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159 | Int &nvischan,
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160 | Array<Int> &flagtra,
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161 | Array<Int> &flagrow,
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162 | Array<Float> &weight,
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163 | Int &nrow,
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164 | Int &irow,
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165 | Array<Complex> &gdata,
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166 | Array<Float> &gwgt,
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167 | Int &nx,
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168 | Int &ny,
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169 | Int &npol,
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170 | Int &nchan,
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171 | Int &support,
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172 | Int &sampling,
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173 | Vector<Float> &convFunc,
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174 | Int *chanMap,
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175 | Int *polMap )
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176 | {
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177 | // parameters for gridding
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178 | Int idopsf = 0 ;
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179 | Int len = npol*nchan ;
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180 | Double *sumw_p = new Double[len] ;
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181 | {
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182 | Double *work_p = sumw_p ;
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183 | for ( Int i = 0 ; i < len ; i++ ) {
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184 | *work_p = 0.0 ;
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185 | work_p++ ;
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186 | }
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187 | }
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188 |
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189 | // prepare pointer
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190 | Bool deletePos, deleteData, deleteWgt, deleteFlag, deleteFlagR, deleteConv, deleteDataG, deleteWgtG ;
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191 | Double *xy_p = xypos.getStorage( deletePos ) ;
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192 | const Complex *values_p = spectra.getStorage( deleteData ) ;
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193 | const Int *flag_p = flagtra.getStorage( deleteFlag ) ;
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194 | const Int *rflag_p = flagrow.getStorage( deleteFlagR ) ;
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195 | const Float *wgt_p = weight.getStorage( deleteWgt ) ;
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196 | Complex *grid_p = gdata.getStorage( deleteDataG ) ;
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197 | Float *wgrid_p = gwgt.getStorage( deleteWgtG ) ;
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198 | Float *conv_p = convFunc.getStorage( deleteConv ) ;
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199 |
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200 | // pass copy of irow to ggridsd since it will be modified in theroutine
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201 | Int irowCopy = irow ;
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202 |
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203 | // call ggridsd
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204 | ggridsd( xy_p,
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205 | values_p,
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206 | &nvispol,
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207 | &nvischan,
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208 | &idopsf,
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209 | flag_p,
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210 | rflag_p,
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211 | wgt_p,
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212 | &nrow,
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213 | &irowCopy,
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214 | grid_p,
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215 | wgrid_p,
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216 | &nx,
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217 | &ny,
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218 | &npol,
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219 | &nchan,
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220 | &support,
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221 | &sampling,
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222 | conv_p,
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223 | chanMap,
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224 | polMap,
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225 | sumw_p ) ;
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226 |
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227 | // finalization
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228 | xypos.putStorage( xy_p, deletePos ) ;
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229 | spectra.freeStorage( values_p, deleteData ) ;
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230 | flagtra.freeStorage( flag_p, deleteFlag ) ;
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231 | flagrow.freeStorage( rflag_p, deleteFlagR ) ;
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232 | weight.freeStorage( wgt_p, deleteWgt ) ;
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233 | gdata.putStorage( grid_p, deleteDataG ) ;
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234 | gwgt.putStorage( wgrid_p, deleteWgtG ) ;
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235 | convFunc.putStorage( conv_p, deleteConv ) ;
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236 | delete sumw_p ;
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237 | }
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238 |
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239 | Bool STGrid::pastEnd()
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240 | {
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241 | LogIO os( LogOrigin("STGrid","pastEnd",WHERE) ) ;
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242 | Bool b = nprocessed_ >= nrow_ ;
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243 | return b ;
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244 | }
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245 |
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246 | void STGrid::grid()
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247 | {
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248 | LogIO os( LogOrigin("STGrid", "grid", WHERE) ) ;
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249 | double t0,t1 ;
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250 |
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251 | // data selection
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252 | t0 = mathutil::gettimeofday_sec() ;
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253 | selectData() ;
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254 | t1 = mathutil::gettimeofday_sec() ;
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255 | os << "selectData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
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256 |
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257 | setupArray() ;
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258 |
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259 | if ( wtype_.compare("UNIFORM") != 0 &&
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260 | wtype_.compare("TINT") != 0 &&
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261 | wtype_.compare("TSYS") != 0 &&
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262 | wtype_.compare("TINTSYS") != 0 ) {
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263 | LogIO os( LogOrigin("STGrid", "grid", WHERE) ) ;
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264 | os << LogIO::WARN << "Unsupported weight type '" << wtype_ << "', apply UNIFORM weight" << LogIO::POST ;
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265 | wtype_ = "UNIFORM" ;
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266 | }
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267 |
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268 | // grid parameter
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269 | os << LogIO::DEBUGGING ;
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270 | os << "----------" << endl ;
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271 | os << "Data selection summary" << endl ;
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272 | os << " ifno = " << ifno_ << endl ;
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273 | os << " pollist = " << pollist_ << endl ;
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274 | os << " scanlist = " << scanlist_ << endl ;
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275 | os << "----------" << endl ;
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276 | os << "Grid parameter summary" << endl ;
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277 | os << " (nx,ny) = (" << nx_ << "," << ny_ << ")" << endl ;
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278 | os << " (cellx,celly) = (" << cellx_ << "," << celly_ << ")" << endl ;
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279 | os << " center = " << center_ << endl ;
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280 | os << " weighting = " << wtype_ << endl ;
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281 | os << " convfunc = " << convType_ << " with support " << convSupport_ << endl ;
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282 | os << "----------" << LogIO::POST ;
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283 | os << LogIO::NORMAL ;
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284 |
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285 | Bool doAll = examine() ;
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286 |
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287 | if ( doAll )
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288 | gridPerPol() ;
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289 | else
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290 | gridPerRow() ;
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291 | }
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292 |
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293 | Bool STGrid::examine()
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294 | {
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295 | // TODO: nchunk_ must be determined from nchan_, npol_, and (nx_,ny_)
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296 | // by considering data size to be allocated for ggridsd input/output
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297 | nchunk_ = 400 ;
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298 | Bool b = nchunk_ >= nrow_ ;
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299 | nchunk_ = min( nchunk_, nrow_ ) ;
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300 | return b ;
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301 | }
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302 |
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303 | void STGrid::gridPerRow()
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304 | {
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305 | LogIO os( LogOrigin("STGrid", "gridPerRow", WHERE) ) ;
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306 | double t0, t1 ;
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307 |
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308 | // convolution kernel
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309 | Vector<Float> convFunc ;
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310 | t0 = mathutil::gettimeofday_sec() ;
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311 | setConvFunc( convFunc ) ;
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312 | t1 = mathutil::gettimeofday_sec() ;
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313 | os << "setConvFunc: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
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314 |
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315 | // grid data
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316 | Int gnx = nx_ ;
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317 | Int gny = ny_ ;
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318 | // Extend grid plane with convSupport_
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319 | // Int gnx = nx_+convSupport_*2 ;
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320 | // Int gny = ny_+convSupport_*2 ;
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321 | IPosition gshape( 4, gnx, gny, npol_, nchan_ ) ;
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322 | Array<Complex> gdataArrC( gshape, 0.0 ) ;
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323 | // 2011/12/20 TN
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324 | // data_ and gwgtArr share storage
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325 | data_.resize( gshape ) ;
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326 | data_ = 0.0 ;
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327 | Array<Float> gwgtArr( data_ ) ;
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328 |
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329 | // parameters for gridding
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330 | Int *chanMap = new Int[nchan_] ;
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331 | {
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332 | Int *work_p = chanMap ;
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333 | for ( Int i = 0 ; i < nchan_ ; i++ ) {
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334 | *work_p = i ;
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335 | work_p++ ;
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336 | }
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337 | }
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338 | Int *polMap = new Int[1] ;
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339 | Int nvispol = 1 ;
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340 | Int irow = -1 ;
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341 |
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342 | // for performance check
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343 | double eGetData = 0.0 ;
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344 | double eToPixel = 0.0 ;
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345 | double eGGridSD = 0.0 ;
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346 | double eInitPol = 0.0 ;
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347 |
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348 | for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) {
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349 | t0 = mathutil::gettimeofday_sec() ;
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350 | initPol( ipol ) ;
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351 | t1 = mathutil::gettimeofday_sec() ;
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352 | eInitPol += t1-t0 ;
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353 |
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354 | polMap[0] = ipol ;
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355 |
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356 | os << "start pol " << ipol << LogIO::POST ;
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357 |
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358 | while( !pastEnd() ) {
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359 | // data storage
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360 | IPosition cshape( 3, npol_, nchan_, nchunk_ ) ;
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361 | IPosition mshape( 2, npol_, nchunk_ ) ;
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362 | IPosition vshape( 1, nchunk_ ) ;
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363 | IPosition dshape( 2, 2, nchunk_ ) ;
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364 | IPosition wshape( 2, nchan_, nchunk_ ) ;
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365 | Array<Complex> spectra( wshape ) ;
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366 | Array<Int> flagtra( wshape ) ;
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367 | Array<Int> rflag( vshape ) ;
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368 | Array<Float> weight( wshape ) ;
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369 | Array<Double> direction( dshape ) ;
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370 | Array<Double> xypos( dshape ) ;
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371 |
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372 | spectraF_.resize( wshape ) ;
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373 | flagtraUC_.resize( wshape ) ;
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374 | rflagUI_.resize( vshape ) ;
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375 |
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376 | // retrieve data
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377 | t0 = mathutil::gettimeofday_sec() ;
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378 | Int nrow = getDataChunk( spectra, direction, flagtra, rflag, weight ) ;
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379 | t1 = mathutil::gettimeofday_sec() ;
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380 | eGetData += t1-t0 ;
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381 |
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382 | // world -> pixel
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383 | t0 = mathutil::gettimeofday_sec() ;
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384 | toPixel( direction, xypos ) ;
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385 | t1 = mathutil::gettimeofday_sec() ;
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386 | eToPixel += t1-t0 ;
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387 |
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388 | // call ggridsd
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389 | t0 = mathutil::gettimeofday_sec() ;
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390 | call_ggridsd( xypos,
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391 | spectra,
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392 | nvispol,
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393 | nchan_,
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394 | flagtra,
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395 | rflag,
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396 | weight,
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397 | nrow,
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398 | irow,
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399 | gdataArrC,
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400 | gwgtArr,
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401 | gnx,
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402 | gny,
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403 | npol_,
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404 | nchan_,
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405 | convSupport_,
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406 | convSampling_,
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407 | convFunc,
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408 | chanMap,
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409 | polMap ) ;
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410 | t1 = mathutil::gettimeofday_sec() ;
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411 | eGGridSD += t1-t0 ;
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412 |
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413 | }
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414 |
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415 | os << "end pol " << ipol << LogIO::POST ;
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416 |
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417 | nprocessed_ = 0 ;
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418 | }
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419 | os << "initPol: elapsed time is " << eInitPol << " sec." << LogIO::POST ;
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420 | os << "getData: elapsed time is " << eGetData-eToInt-eGetWeight << " sec." << LogIO::POST ;
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421 | os << "toPixel: elapsed time is " << eToPixel << " sec." << LogIO::POST ;
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422 | os << "ggridsd: elapsed time is " << eGGridSD << " sec." << LogIO::POST ;
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423 | os << "toInt: elapsed time is " << eToInt << " sec." << LogIO::POST ;
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424 | os << "getWeight: elapsed time is " << eGetWeight << " sec." << LogIO::POST ;
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425 |
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426 | delete polMap ;
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427 | delete chanMap ;
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428 |
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429 | // set data
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430 | setData( gdataArrC, gwgtArr ) ;
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431 |
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432 | }
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433 |
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434 | void STGrid::gridPerPol()
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435 | {
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436 | LogIO os( LogOrigin("STGrid", "gridPerPol", WHERE) ) ;
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437 | double t0, t1 ;
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438 |
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439 | // convolution kernel
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440 | Vector<Float> convFunc ;
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441 | t0 = mathutil::gettimeofday_sec() ;
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442 | setConvFunc( convFunc ) ;
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443 | t1 = mathutil::gettimeofday_sec() ;
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444 | os << "setConvFunc: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
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445 |
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446 | // prepare grid data storage
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447 | Int gnx = nx_ ;
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448 | Int gny = ny_ ;
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449 | // // Extend grid plane with convSupport_
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450 | // Int gnx = nx_+convSupport_*2 ;
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451 | // Int gny = ny_+convSupport_*2 ;
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452 | IPosition gshape( 4, gnx, gny, npol_, nchan_ ) ;
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453 | Array<Complex> gdataArrC( gshape, 0.0 ) ;
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454 | //Array<Float> gwgtArr( gshape, 0.0 ) ;
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455 | // 2011/12/20 TN
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456 | // data_ and weight array shares storage
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457 | data_.resize( gshape ) ;
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458 | data_ = 0.0 ;
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459 | Array<Float> gwgtArr( data_ ) ;
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460 |
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461 | // to read data from the table
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462 | IPosition mshape( 2, nchan_, nrow_ ) ;
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463 | IPosition dshape( 2, 2, nrow_ ) ;
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464 | Array<Complex> spectra( mshape ) ;
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465 | Array<Double> direction( dshape ) ;
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466 | Array<Int> flagtra( mshape ) ;
|
---|
467 | Array<Int> rflag( IPosition(1,nrow_) ) ;
|
---|
468 | Array<Float> weight( mshape ) ;
|
---|
469 | Array<Double> xypos( dshape ) ;
|
---|
470 |
|
---|
471 | // maps
|
---|
472 | Int *chanMap = new Int[nchan_] ;
|
---|
473 | {
|
---|
474 | Int *work_p = chanMap ;
|
---|
475 | for ( Int i = 0 ; i < nchan_ ; i++ ) {
|
---|
476 | *work_p = i ;
|
---|
477 | work_p++ ;
|
---|
478 | }
|
---|
479 | }
|
---|
480 | Int *polMap = new Int[1] ;
|
---|
481 |
|
---|
482 | // some parameters for ggridsd
|
---|
483 | Int nvispol = 1 ;
|
---|
484 | Int irow = -1 ;
|
---|
485 |
|
---|
486 | // for performance check
|
---|
487 | double eInitPol = 0.0 ;
|
---|
488 | double eGetData = 0.0 ;
|
---|
489 | double eToPixel = 0.0 ;
|
---|
490 | double eGGridSD = 0.0 ;
|
---|
491 | double eToInt = 0.0 ;
|
---|
492 |
|
---|
493 | for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) {
|
---|
494 | t0 = mathutil::gettimeofday_sec() ;
|
---|
495 | initPol( ipol ) ;
|
---|
496 | t1 = mathutil::gettimeofday_sec() ;
|
---|
497 | eInitPol += t1-t0 ;
|
---|
498 |
|
---|
499 | // retrieve data
|
---|
500 | t0 = mathutil::gettimeofday_sec() ;
|
---|
501 | getDataPerPol( spectra, direction, flagtra, rflag, weight ) ;
|
---|
502 | t1 = mathutil::gettimeofday_sec() ;
|
---|
503 | eGetData += t1-t0 ;
|
---|
504 |
|
---|
505 | // world -> pixel
|
---|
506 | t0 = mathutil::gettimeofday_sec() ;
|
---|
507 | toPixel( direction, xypos ) ;
|
---|
508 | t1 = mathutil::gettimeofday_sec() ;
|
---|
509 | eToPixel += t1-t0 ;
|
---|
510 |
|
---|
511 | // call ggridsd
|
---|
512 | polMap[0] = ipol ;
|
---|
513 | t0 = mathutil::gettimeofday_sec() ;
|
---|
514 | call_ggridsd( xypos,
|
---|
515 | spectra,
|
---|
516 | nvispol,
|
---|
517 | nchan_,
|
---|
518 | flagtra,
|
---|
519 | rflag,
|
---|
520 | weight,
|
---|
521 | nrow_,
|
---|
522 | irow,
|
---|
523 | gdataArrC,
|
---|
524 | gwgtArr,
|
---|
525 | gnx,
|
---|
526 | gny,
|
---|
527 | npol_,
|
---|
528 | nchan_,
|
---|
529 | convSupport_,
|
---|
530 | convSampling_,
|
---|
531 | convFunc,
|
---|
532 | chanMap,
|
---|
533 | polMap ) ;
|
---|
534 | t1 = mathutil::gettimeofday_sec() ;
|
---|
535 | eGGridSD += t1-t0 ;
|
---|
536 | }
|
---|
537 | os << "initPol: elapsed time is " << eInitPol << " sec." << LogIO::POST ;
|
---|
538 | os << "getData: elapsed time is " << eGetData-eToInt-eGetWeight << " sec." << LogIO::POST ;
|
---|
539 | os << "toPixel: elapsed time is " << eToPixel << " sec." << LogIO::POST ;
|
---|
540 | os << "ggridsd: elapsed time is " << eGGridSD << " sec." << LogIO::POST ;
|
---|
541 | os << "toInt: elapsed time is " << eToInt << " sec." << LogIO::POST ;
|
---|
542 | os << "getWeight: elapsed time is " << eGetWeight << " sec." << LogIO::POST ;
|
---|
543 |
|
---|
544 | // delete maps
|
---|
545 | delete polMap ;
|
---|
546 | delete chanMap ;
|
---|
547 |
|
---|
548 | setData( gdataArrC, gwgtArr ) ;
|
---|
549 | // os << "gdataArr = " << gdataArr << LogIO::POST ;
|
---|
550 | // os << "gwgtArr = " << gwgtArr << LogIO::POST ;
|
---|
551 | // os << "data_ " << data_ << LogIO::POST ;
|
---|
552 | }
|
---|
553 |
|
---|
554 | void STGrid::initPol( Int ipol )
|
---|
555 | {
|
---|
556 | LogIO os( LogOrigin("STGrid","initPol",WHERE) ) ;
|
---|
557 | if ( npolOrg_ == 1 ) {
|
---|
558 | os << "single polarization data." << LogIO::POST ;
|
---|
559 | ptab_ = tab_ ;
|
---|
560 | }
|
---|
561 | else
|
---|
562 | ptab_ = tab_( tab_.col("POLNO") == (uInt)ipol ) ;
|
---|
563 |
|
---|
564 | attach( ptab_ ) ;
|
---|
565 | }
|
---|
566 |
|
---|
567 | void STGrid::setData( Array<Complex> &gdata,
|
---|
568 | Array<Float> &gwgt )
|
---|
569 | {
|
---|
570 | // 2011/12/20 TN
|
---|
571 | // gwgt and data_ share storage
|
---|
572 | LogIO os( LogOrigin("STGrid","setData",WHERE) ) ;
|
---|
573 | double t0, t1 ;
|
---|
574 | t0 = mathutil::gettimeofday_sec() ;
|
---|
575 | uInt len = data_.nelements() ;
|
---|
576 | const Complex *w1_p ;
|
---|
577 | Float *w2_p ;
|
---|
578 | Bool b1, b2 ;
|
---|
579 | const Complex *gdata_p = gdata.getStorage( b1 ) ;
|
---|
580 | Float *gwgt_p = data_.getStorage( b2 ) ;
|
---|
581 | w1_p = gdata_p ;
|
---|
582 | w2_p = gwgt_p ;
|
---|
583 | for ( uInt i = 0 ; i < len ; i++ ) {
|
---|
584 | if ( *w2_p > 0.0 ) *w2_p = (*w1_p).real() / *w2_p ;
|
---|
585 | w1_p++ ;
|
---|
586 | w2_p++ ;
|
---|
587 | }
|
---|
588 | gdata.freeStorage( gdata_p, b1 ) ;
|
---|
589 | data_.putStorage( gwgt_p, b2 ) ;
|
---|
590 | t1 = mathutil::gettimeofday_sec() ;
|
---|
591 | os << "setData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
|
---|
592 | }
|
---|
593 |
|
---|
594 | void STGrid::setupGrid( Int &nx,
|
---|
595 | Int &ny,
|
---|
596 | String &cellx,
|
---|
597 | String &celly,
|
---|
598 | Double &xmin,
|
---|
599 | Double &xmax,
|
---|
600 | Double &ymin,
|
---|
601 | Double &ymax,
|
---|
602 | String ¢er )
|
---|
603 | {
|
---|
604 | LogIO os( LogOrigin("STGrid","setupGrid",WHERE) ) ;
|
---|
605 | //cout << "nx=" << nx << ", ny=" << ny << endl ;
|
---|
606 |
|
---|
607 | // center position
|
---|
608 | if ( center.size() == 0 ) {
|
---|
609 | center_(0) = 0.5 * ( xmin + xmax ) ;
|
---|
610 | center_(1) = 0.5 * ( ymin + ymax ) ;
|
---|
611 | }
|
---|
612 | else {
|
---|
613 | String::size_type pos0 = center.find( " " ) ;
|
---|
614 | if ( pos0 == String::npos ) {
|
---|
615 | throw AipsError( "bad string format in parameter center" ) ;
|
---|
616 | }
|
---|
617 | String::size_type pos1 = center.find( " ", pos0+1 ) ;
|
---|
618 | String typestr, xstr, ystr ;
|
---|
619 | if ( pos1 != String::npos ) {
|
---|
620 | typestr = center.substr( 0, pos0 ) ;
|
---|
621 | xstr = center.substr( pos0+1, pos1-pos0 ) ;
|
---|
622 | ystr = center.substr( pos1+1 ) ;
|
---|
623 | // todo: convert to J2000 (or direction ref for DIRECTION column)
|
---|
624 | }
|
---|
625 | else {
|
---|
626 | typestr = "J2000" ;
|
---|
627 | xstr = center.substr( 0, pos0 ) ;
|
---|
628 | ystr = center.substr( pos0+1 ) ;
|
---|
629 | }
|
---|
630 | QuantumHolder qh ;
|
---|
631 | String err ;
|
---|
632 | qh.fromString( err, xstr ) ;
|
---|
633 | Quantum<Double> xcen = qh.asQuantumDouble() ;
|
---|
634 | qh.fromString( err, ystr ) ;
|
---|
635 | Quantum<Double> ycen = qh.asQuantumDouble() ;
|
---|
636 | center_(0) = xcen.getValue( "rad" ) ;
|
---|
637 | center_(1) = ycen.getValue( "rad" ) ;
|
---|
638 | }
|
---|
639 |
|
---|
640 |
|
---|
641 | nx_ = nx ;
|
---|
642 | ny_ = ny ;
|
---|
643 | if ( nx < 0 && ny > 0 ) {
|
---|
644 | nx_ = ny ;
|
---|
645 | ny_ = ny ;
|
---|
646 | }
|
---|
647 | if ( ny < 0 && nx > 0 ) {
|
---|
648 | nx_ = nx ;
|
---|
649 | ny_ = nx ;
|
---|
650 | }
|
---|
651 |
|
---|
652 | //Double wx = xmax - xmin ;
|
---|
653 | //Double wy = ymax - ymin ;
|
---|
654 | Double wx = max( abs(xmax-center_(0)), abs(xmin-center_(0)) ) * 2 ;
|
---|
655 | Double wy = max( abs(ymax-center_(1)), abs(ymin-center_(1)) ) * 2 ;
|
---|
656 | // take 10% margin
|
---|
657 | wx *= 1.10 ;
|
---|
658 | wy *= 1.10 ;
|
---|
659 |
|
---|
660 | Quantum<Double> qcellx ;
|
---|
661 | Quantum<Double> qcelly ;
|
---|
662 | //cout << "nx_ = " << nx_ << ", ny_ = " << ny_ << endl ;
|
---|
663 | if ( cellx.size() != 0 && celly.size() != 0 ) {
|
---|
664 | readQuantity( qcellx, cellx ) ;
|
---|
665 | readQuantity( qcelly, celly ) ;
|
---|
666 | }
|
---|
667 | else if ( celly.size() != 0 ) {
|
---|
668 | os << "Using celly to x-axis..." << LogIO::POST ;
|
---|
669 | readQuantity( qcelly, celly ) ;
|
---|
670 | qcellx = qcelly ;
|
---|
671 | }
|
---|
672 | else if ( cellx.size() != 0 ) {
|
---|
673 | os << "Using cellx to y-axis..." << LogIO::POST ;
|
---|
674 | readQuantity( qcellx, cellx ) ;
|
---|
675 | qcelly = qcellx ;
|
---|
676 | }
|
---|
677 | else {
|
---|
678 | if ( nx_ < 0 ) {
|
---|
679 | os << "No user preference in grid setting. Using default..." << LogIO::POST ;
|
---|
680 | readQuantity( qcellx, "1.0arcmin" ) ;
|
---|
681 | qcelly = qcellx ;
|
---|
682 | }
|
---|
683 | else {
|
---|
684 | if ( wx == 0.0 ) {
|
---|
685 | os << "Using default spatial extent (10arcmin) in x" << LogIO::POST ;
|
---|
686 | wx = 0.00290888 ;
|
---|
687 | }
|
---|
688 | if ( wy == 0.0 ) {
|
---|
689 | os << "Using default spatial extent (10arcmin) in y" << LogIO::POST ;
|
---|
690 | wy = 0.00290888 ;
|
---|
691 | }
|
---|
692 | qcellx = Quantum<Double>( wx/nx_, "rad" ) ;
|
---|
693 | qcelly = Quantum<Double>( wy/ny_, "rad" ) ;
|
---|
694 | }
|
---|
695 | }
|
---|
696 | cellx_ = qcellx.getValue( "rad" ) ;
|
---|
697 | celly_ = qcelly.getValue( "rad" ) ;
|
---|
698 | if ( nx_ < 0 ) {
|
---|
699 | if ( wx == 0.0 ) {
|
---|
700 | os << "Using default spatial extent (10arcmin) in x" << LogIO::POST ;
|
---|
701 | wx = 0.00290888 ;
|
---|
702 | }
|
---|
703 | if ( wy == 0.0 ) {
|
---|
704 | os << "Using default spatial extent (10arcmin) in y" << LogIO::POST ;
|
---|
705 | wy = 0.00290888 ;
|
---|
706 | }
|
---|
707 | nx_ = Int( ceil( wx/cellx_ ) ) ;
|
---|
708 | ny_ = Int( ceil( wy/celly_ ) ) ;
|
---|
709 | }
|
---|
710 | }
|
---|
711 |
|
---|
712 | void STGrid::selectData()
|
---|
713 | {
|
---|
714 | LogIO os( LogOrigin("STGrid","selectData",WHERE) ) ;
|
---|
715 | Int ifno = ifno_ ;
|
---|
716 | Table taborg( infile_ ) ;
|
---|
717 | if ( ifno == -1 ) {
|
---|
718 | ROScalarColumn<uInt> ifnoCol( taborg, "IFNO" ) ;
|
---|
719 | ifno = ifnoCol( 0 ) ;
|
---|
720 | os << LogIO::WARN
|
---|
721 | << "IFNO is not given. Using default IFNO: " << ifno << LogIO::POST ;
|
---|
722 | }
|
---|
723 | TableExprNode node ;
|
---|
724 | if ( isMultiIF( taborg ) ) {
|
---|
725 | os << "apply selection on IFNO" << LogIO::POST ;
|
---|
726 | node = taborg.col("IFNO") == ifno ;
|
---|
727 | }
|
---|
728 | if ( scanlist_.size() > 0 ) {
|
---|
729 | os << "apply selection on SCANNO" << LogIO::POST ;
|
---|
730 | node = node && taborg.col("SCANNO").in( scanlist_ ) ;
|
---|
731 | }
|
---|
732 | if ( node.isNull() ) {
|
---|
733 | tab_ = taborg ;
|
---|
734 | }
|
---|
735 | else {
|
---|
736 | tab_ = taborg( node ) ;
|
---|
737 | }
|
---|
738 | if ( tab_.nrow() == 0 ) {
|
---|
739 | os << LogIO::SEVERE
|
---|
740 | << "No corresponding rows for given selection: IFNO " << ifno ;
|
---|
741 | if ( scanlist_.size() > 0 )
|
---|
742 | os << " SCANNO " << scanlist_ ;
|
---|
743 | os << LogIO::EXCEPTION ;
|
---|
744 | }
|
---|
745 | }
|
---|
746 |
|
---|
747 | Bool STGrid::isMultiIF( Table &tab )
|
---|
748 | {
|
---|
749 | ROScalarColumn<uInt> ifnoCol( tab, "IFNO" ) ;
|
---|
750 | Vector<uInt> ifnos = ifnoCol.getColumn() ;
|
---|
751 | return anyNE( ifnos, ifnos[0] ) ;
|
---|
752 | }
|
---|
753 |
|
---|
754 | void STGrid::attach( Table &tab )
|
---|
755 | {
|
---|
756 | // attach to table
|
---|
757 | spectraCol_.attach( tab, "SPECTRA" ) ;
|
---|
758 | flagtraCol_.attach( tab, "FLAGTRA" ) ;
|
---|
759 | directionCol_.attach( tab, "DIRECTION" ) ;
|
---|
760 | flagRowCol_.attach( tab, "FLAGROW" ) ;
|
---|
761 | tsysCol_.attach( tab, "TSYS" ) ;
|
---|
762 | intervalCol_.attach( tab, "INTERVAL" ) ;
|
---|
763 | // Vector<String> colnames( 6 ) ;
|
---|
764 | // colnames[0] = "SPECTRA" ;
|
---|
765 | // colnames[1] = "FLAGTRA" ;
|
---|
766 | // colnames[2] = "DIRECTION" ;
|
---|
767 | // colnames[3] = "FLAGROW" ;
|
---|
768 | // colnames[4] = "TSYS" ;
|
---|
769 | // colnames[5] = "INTERVAL" ;
|
---|
770 | // row_ = ROTableRow( tab_, colnames ) ;
|
---|
771 | // const TableRecord &rec = row_.record() ;
|
---|
772 | // spectraRF_.attachToRecord( rec, colnames[0] ) ;
|
---|
773 | // flagtraRF_.attachToRecord( rec, colnames[1] ) ;
|
---|
774 | // directionRF_.attachToRecord( rec, colnames[2] ) ;
|
---|
775 | // flagRowRF_.attachToRecord( rec, colnames[3] ) ;
|
---|
776 | // tsysRF_.attachToRecord( rec, colnames[4] ) ;
|
---|
777 | // intervalRF_.attachToRecord( rec, colnames[5] ) ;
|
---|
778 | }
|
---|
779 |
|
---|
780 | void STGrid::getDataPerPol( Array<Float> &spectra,
|
---|
781 | Array<Double> &direction,
|
---|
782 | Array<uChar> &flagtra,
|
---|
783 | Array<uInt> &rflag,
|
---|
784 | Array<Float> &weight )
|
---|
785 | {
|
---|
786 | LogIO os( LogOrigin("STGrid","getDataPerPol",WHERE) ) ;
|
---|
787 |
|
---|
788 | // 2011/12/22 TN
|
---|
789 | // weight and tsys shares its storage
|
---|
790 | Array<Float> tsys( weight ) ;
|
---|
791 | Array<Double> tint( rflag.shape() ) ;
|
---|
792 |
|
---|
793 | Vector<uInt> rflagVec( rflag ) ;
|
---|
794 | Vector<Double> tintVec( tint ) ;
|
---|
795 |
|
---|
796 | spectraCol_.getColumn( spectra ) ;
|
---|
797 | flagtraCol_.getColumn( flagtra ) ;
|
---|
798 | flagRowCol_.getColumn( rflagVec ) ;
|
---|
799 | directionCol_.getColumn( direction ) ;
|
---|
800 | intervalCol_.getColumn( tintVec ) ;
|
---|
801 | Vector<Float> tsysTemp = tsysCol_( 0 ) ;
|
---|
802 | if ( tsysTemp.nelements() == (uInt)nchan_ ) {
|
---|
803 | tsysCol_.getColumn( tsys ) ;
|
---|
804 | }
|
---|
805 | else {
|
---|
806 | tsys = tsysTemp[0] ;
|
---|
807 | }
|
---|
808 |
|
---|
809 | double t0,t1 ;
|
---|
810 | t0 = mathutil::gettimeofday_sec() ;
|
---|
811 | getWeight( weight, tsys, tint ) ;
|
---|
812 | t1 = mathutil::gettimeofday_sec() ;
|
---|
813 | eGetWeight += t1-t0 ;
|
---|
814 | }
|
---|
815 |
|
---|
816 | void STGrid::getDataPerPol( Array<Complex> &spectra,
|
---|
817 | Array<Double> &direction,
|
---|
818 | Array<Int> &flagtra,
|
---|
819 | Array<Int> &rflag,
|
---|
820 | Array<Float> &weight )
|
---|
821 | {
|
---|
822 | LogIO os( LogOrigin("STGrid","getDataPerPol",WHERE) ) ;
|
---|
823 | double t0, t1 ;
|
---|
824 |
|
---|
825 | Array<uChar> flagUC( flagtra.shape() ) ;
|
---|
826 | Array<uInt> rflagUI( rflag.shape() ) ;
|
---|
827 | Array<Float> spectraF( spectra.shape() ) ;
|
---|
828 | getDataPerPol( spectraF, direction, flagUC, rflagUI, weight ) ;
|
---|
829 |
|
---|
830 | convertArray( spectra, spectraF ) ;
|
---|
831 | t0 = mathutil::gettimeofday_sec() ;
|
---|
832 | toInt( flagUC, flagtra ) ;
|
---|
833 | toInt( rflagUI, rflag ) ;
|
---|
834 | t1 = mathutil::gettimeofday_sec() ;
|
---|
835 | eToInt += t1-t0 ;
|
---|
836 | //os << "toInt: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
|
---|
837 | }
|
---|
838 |
|
---|
839 | Int STGrid::getDataChunk( Array<Complex> &spectra,
|
---|
840 | Array<Double> &direction,
|
---|
841 | Array<Int> &flagtra,
|
---|
842 | Array<Int> &rflag,
|
---|
843 | Array<Float> &weight )
|
---|
844 | {
|
---|
845 | LogIO os( LogOrigin("STGrid","getDataChunk",WHERE) ) ;
|
---|
846 | Int nrow = getDataChunk( spectraF_, direction, flagtraUC_, rflagUI_, weight ) ;
|
---|
847 | if ( nrow < nchunk_ ) {
|
---|
848 | spectra.resize( spectraF_.shape() ) ;
|
---|
849 | flagtra.resize( flagtraUC_.shape() ) ;
|
---|
850 | rflag.resize( rflagUI_.shape() ) ;
|
---|
851 | }
|
---|
852 | double t0, t1 ;
|
---|
853 | t0 = mathutil::gettimeofday_sec() ;
|
---|
854 | convertArray( spectra, spectraF_ ) ;
|
---|
855 | toInt( flagtraUC_, flagtra ) ;
|
---|
856 | toInt( rflagUI_, rflag ) ;
|
---|
857 | t1 = mathutil::gettimeofday_sec() ;
|
---|
858 | eToInt = t1 - t0 ;
|
---|
859 |
|
---|
860 | return nrow ;
|
---|
861 | }
|
---|
862 |
|
---|
863 | Int STGrid::getDataChunk( Array<Float> &spectra,
|
---|
864 | Array<Double> &direction,
|
---|
865 | Array<uChar> &flagtra,
|
---|
866 | Array<uInt> &rflag,
|
---|
867 | Array<Float> &weight )
|
---|
868 | {
|
---|
869 | LogIO os( LogOrigin("STGrid","getDataChunk",WHERE) ) ;
|
---|
870 | Int nrow = spectra.shape()[1] ;
|
---|
871 | Int remainingRow = nrow_ - nprocessed_ ;
|
---|
872 | if ( remainingRow < nrow ) {
|
---|
873 | nrow = remainingRow ;
|
---|
874 | IPosition mshape( 2, nchan_, nrow ) ;
|
---|
875 | IPosition vshape( 1, nrow ) ;
|
---|
876 | spectra.resize( mshape ) ;
|
---|
877 | flagtra.resize( mshape ) ;
|
---|
878 | direction.resize( IPosition(2,2,nrow) ) ;
|
---|
879 | rflag.resize( vshape ) ;
|
---|
880 | weight.resize( mshape ) ;
|
---|
881 | }
|
---|
882 | // 2011/12/22 TN
|
---|
883 | // tsys shares its storage with weight
|
---|
884 | Array<Float> tsys( weight ) ;
|
---|
885 | Array<Double> tint( rflag.shape() ) ;
|
---|
886 |
|
---|
887 | Vector<uInt> rflagVec( rflag ) ;
|
---|
888 | Vector<Double> tintVec( tint ) ;
|
---|
889 |
|
---|
890 | RefRows rows( nprocessed_, nprocessed_+nrow-1, 1 ) ;
|
---|
891 | //os<<LogIO::DEBUGGING<<"nprocessed_="<<nprocessed_<<": rows.nrows()="<<rows.nrows()<<LogIO::POST ;
|
---|
892 | spectraCol_.getColumnCells( rows, spectra ) ;
|
---|
893 | flagtraCol_.getColumnCells( rows, flagtra ) ;
|
---|
894 | directionCol_.getColumnCells( rows, direction ) ;
|
---|
895 | flagRowCol_.getColumnCells( rows, rflagVec ) ;
|
---|
896 | intervalCol_.getColumnCells( rows, tintVec ) ;
|
---|
897 | Vector<Float> tsysTemp = tsysCol_( nprocessed_ ) ;
|
---|
898 | if ( tsysTemp.nelements() == (uInt)nchan_ )
|
---|
899 | tsysCol_.getColumnCells( rows, tsys ) ;
|
---|
900 | else
|
---|
901 | tsys = tsysTemp[0] ;
|
---|
902 |
|
---|
903 | double t0,t1 ;
|
---|
904 | t0 = mathutil::gettimeofday_sec() ;
|
---|
905 | getWeight( weight, tsys, tint ) ;
|
---|
906 | t1 = mathutil::gettimeofday_sec() ;
|
---|
907 | eGetWeight += t1-t0 ;
|
---|
908 |
|
---|
909 | nprocessed_ += nrow ;
|
---|
910 |
|
---|
911 | return nrow ;
|
---|
912 | }
|
---|
913 |
|
---|
914 | void STGrid::setupArray()
|
---|
915 | {
|
---|
916 | LogIO os( LogOrigin("STGrid","setupArray",WHERE) ) ;
|
---|
917 | ROScalarColumn<uInt> polnoCol( tab_, "POLNO" ) ;
|
---|
918 | Vector<uInt> pols = polnoCol.getColumn() ;
|
---|
919 | //os << pols << LogIO::POST ;
|
---|
920 | Vector<uInt> pollistOrg ;
|
---|
921 | npolOrg_ = 0 ;
|
---|
922 | uInt polno ;
|
---|
923 | for ( uInt i = 0 ; i < polnoCol.nrow() ; i++ ) {
|
---|
924 | //polno = polnoCol( i ) ;
|
---|
925 | polno = pols( i ) ;
|
---|
926 | if ( allNE( pollistOrg, polno ) ) {
|
---|
927 | pollistOrg.resize( npolOrg_+1, True ) ;
|
---|
928 | pollistOrg[npolOrg_] = polno ;
|
---|
929 | npolOrg_++ ;
|
---|
930 | }
|
---|
931 | }
|
---|
932 | if ( pollist_.size() == 0 )
|
---|
933 | pollist_ = pollistOrg ;
|
---|
934 | else {
|
---|
935 | Vector<uInt> newlist ;
|
---|
936 | uInt newsize = 0 ;
|
---|
937 | for ( uInt i = 0 ; i < pollist_.size() ; i++ ) {
|
---|
938 | if ( anyEQ( pollistOrg, pollist_[i] ) ) {
|
---|
939 | newlist.resize( newsize+1, True ) ;
|
---|
940 | newlist[newsize] = pollist_[i] ;
|
---|
941 | newsize++ ;
|
---|
942 | }
|
---|
943 | }
|
---|
944 | pollist_.assign( newlist ) ;
|
---|
945 | }
|
---|
946 | npol_ = pollist_.size() ;
|
---|
947 | if ( npol_ == 0 ) {
|
---|
948 | os << LogIO::SEVERE << "Empty pollist" << LogIO::EXCEPTION ;
|
---|
949 | }
|
---|
950 | nrow_ = tab_.nrow() / npolOrg_ ;
|
---|
951 | ROArrayColumn<uChar> tmpCol( tab_, "FLAGTRA" ) ;
|
---|
952 | nchan_ = tmpCol( 0 ).nelements() ;
|
---|
953 | // os << "npol_ = " << npol_ << "(" << pollist_ << ")" << endl
|
---|
954 | // << "nchan_ = " << nchan_ << endl
|
---|
955 | // << "nrow_ = " << nrow_ << LogIO::POST ;
|
---|
956 | }
|
---|
957 |
|
---|
958 | void STGrid::getWeight( Array<Float> &w,
|
---|
959 | Array<Float> &tsys,
|
---|
960 | Array<Double> &tint )
|
---|
961 | {
|
---|
962 | LogIO os( LogOrigin("STGrid","getWeight",WHERE) ) ;
|
---|
963 |
|
---|
964 | // 2011/12/22 TN
|
---|
965 | // w (weight) and tsys share storage
|
---|
966 | IPosition refShape = tsys.shape() ;
|
---|
967 | Int nchan = refShape[0] ;
|
---|
968 | Int nrow = refShape[1] ;
|
---|
969 | // os << "nchan=" << nchan << ", nrow=" << nrow << LogIO::POST ;
|
---|
970 | // os << "w.shape()=" << w.shape() << endl
|
---|
971 | // << "tsys.shape()=" << tsys.shape() << endl
|
---|
972 | // << "tint.shape()=" << tint.shape() << LogIO::POST ;
|
---|
973 |
|
---|
974 | // set weight
|
---|
975 | if ( wtype_.compare( "UNIFORM" ) == 0 ) {
|
---|
976 | w = 1.0 ;
|
---|
977 | }
|
---|
978 | else if ( wtype_.compare( "TINT" ) == 0 ) {
|
---|
979 | Bool b0, b1 ;
|
---|
980 | Float *w_p = w.getStorage( b0 ) ;
|
---|
981 | Float *w0_p = w_p ;
|
---|
982 | const Double *ti_p = tint.getStorage( b1 ) ;
|
---|
983 | const Double *w1_p = ti_p ;
|
---|
984 | for ( Int irow = 0 ; irow < nrow ; irow++ ) {
|
---|
985 | for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) {
|
---|
986 | *w0_p = *w1_p ;
|
---|
987 | w0_p++ ;
|
---|
988 | }
|
---|
989 | w1_p++ ;
|
---|
990 | }
|
---|
991 | w.putStorage( w_p, b0 ) ;
|
---|
992 | tint.freeStorage( ti_p, b1 ) ;
|
---|
993 | }
|
---|
994 | else if ( wtype_.compare( "TSYS" ) == 0 ) {
|
---|
995 | Bool b0 ;
|
---|
996 | Float *w_p = w.getStorage( b0 ) ;
|
---|
997 | Float *w0_p = w_p ;
|
---|
998 | for ( Int irow = 0 ; irow < nrow ; irow++ ) {
|
---|
999 | for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) {
|
---|
1000 | Float temp = *w0_p ;
|
---|
1001 | *w0_p = 1.0 / ( temp * temp ) ;
|
---|
1002 | w0_p++ ;
|
---|
1003 | }
|
---|
1004 | }
|
---|
1005 | w.putStorage( w_p, b0 ) ;
|
---|
1006 | }
|
---|
1007 | else if ( wtype_.compare( "TINTSYS" ) == 0 ) {
|
---|
1008 | Bool b0, b1 ;
|
---|
1009 | Float *w_p = w.getStorage( b0 ) ;
|
---|
1010 | Float *w0_p = w_p ;
|
---|
1011 | const Double *ti_p = tint.getStorage( b1 ) ;
|
---|
1012 | const Double *w1_p = ti_p ;
|
---|
1013 | for ( Int irow = 0 ; irow < nrow ; irow++ ) {
|
---|
1014 | Float interval = *w1_p ;
|
---|
1015 | for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) {
|
---|
1016 | Float temp = *w0_p ;
|
---|
1017 | *w0_p = interval / ( temp * temp ) ;
|
---|
1018 | w0_p++ ;
|
---|
1019 | }
|
---|
1020 | w1_p++ ;
|
---|
1021 | }
|
---|
1022 | w.putStorage( w_p, b0 ) ;
|
---|
1023 | tint.freeStorage( ti_p, b1 ) ;
|
---|
1024 | }
|
---|
1025 | else {
|
---|
1026 | //LogIO os( LogOrigin("STGrid", "getWeight", WHERE) ) ;
|
---|
1027 | //os << LogIO::WARN << "Unsupported weight type '" << wtype_ << "', apply UNIFORM weight" << LogIO::POST ;
|
---|
1028 | w = 1.0 ;
|
---|
1029 | }
|
---|
1030 | }
|
---|
1031 |
|
---|
1032 | void STGrid::toInt( Array<uChar> &u, Array<Int> &v )
|
---|
1033 | {
|
---|
1034 | uInt len = u.nelements() ;
|
---|
1035 | Int *int_p = new Int[len] ;
|
---|
1036 | Bool deleteIt ;
|
---|
1037 | const uChar *data_p = u.getStorage( deleteIt ) ;
|
---|
1038 | Int *i_p = int_p ;
|
---|
1039 | const uChar *u_p = data_p ;
|
---|
1040 | for ( uInt i = 0 ; i < len ; i++ ) {
|
---|
1041 | *i_p = ( *u_p == 0 ) ? 0 : 1 ;
|
---|
1042 | i_p++ ;
|
---|
1043 | u_p++ ;
|
---|
1044 | }
|
---|
1045 | u.freeStorage( data_p, deleteIt ) ;
|
---|
1046 | v.takeStorage( u.shape(), int_p, TAKE_OVER ) ;
|
---|
1047 | }
|
---|
1048 |
|
---|
1049 | void STGrid::toInt( Array<uInt> &u, Array<Int> &v )
|
---|
1050 | {
|
---|
1051 | uInt len = u.nelements() ;
|
---|
1052 | Int *int_p = new Int[len] ;
|
---|
1053 | Bool deleteIt ;
|
---|
1054 | const uInt *data_p = u.getStorage( deleteIt ) ;
|
---|
1055 | Int *i_p = int_p ;
|
---|
1056 | const uInt *u_p = data_p ;
|
---|
1057 | for ( uInt i = 0 ; i < len ; i++ ) {
|
---|
1058 | *i_p = ( *u_p == 0 ) ? 0 : 1 ;
|
---|
1059 | i_p++ ;
|
---|
1060 | u_p++ ;
|
---|
1061 | }
|
---|
1062 | u.freeStorage( data_p, deleteIt ) ;
|
---|
1063 | v.takeStorage( u.shape(), int_p, TAKE_OVER ) ;
|
---|
1064 | }
|
---|
1065 |
|
---|
1066 | void STGrid::toPixel( Array<Double> &world, Array<Double> &pixel )
|
---|
1067 | {
|
---|
1068 | // gridding will be done on (nx_+2*convSupport_) x (ny_+2*convSupport_)
|
---|
1069 | // grid plane to avoid unexpected behavior on grid edge
|
---|
1070 | Block<Double> pixc( 2 ) ;
|
---|
1071 | pixc[0] = Double( nx_-1 ) * 0.5 ;
|
---|
1072 | pixc[1] = Double( ny_-1 ) * 0.5 ;
|
---|
1073 | // pixc[0] = Double( nx_+2*convSupport_-1 ) * 0.5 ;
|
---|
1074 | // pixc[1] = Double( ny_+2*convSupport_-1 ) * 0.5 ;
|
---|
1075 | uInt nrow = world.shape()[1] ;
|
---|
1076 | Bool bw, bp ;
|
---|
1077 | const Double *w_p = world.getStorage( bw ) ;
|
---|
1078 | Double *p_p = pixel.getStorage( bp ) ;
|
---|
1079 | const Double *ww_p = w_p ;
|
---|
1080 | Double *wp_p = p_p ;
|
---|
1081 | for ( uInt i = 0 ; i < nrow ; i++ ) {
|
---|
1082 | *wp_p = pixc[0] + ( *ww_p - center_[0] ) / cellx_ ;
|
---|
1083 | wp_p++ ;
|
---|
1084 | ww_p++ ;
|
---|
1085 | *wp_p = pixc[1] + ( *ww_p - center_[1] ) / celly_ ;
|
---|
1086 | wp_p++ ;
|
---|
1087 | ww_p++ ;
|
---|
1088 | }
|
---|
1089 | world.freeStorage( w_p, bw ) ;
|
---|
1090 | pixel.putStorage( p_p, bp ) ;
|
---|
1091 | // String gridfile = "grid."+convType_+"."+String::toString(convSupport_)+".dat" ;
|
---|
1092 | // ofstream ofs( gridfile.c_str(), ios::out ) ;
|
---|
1093 | // ofs << "center " << center_(0) << " " << pixc(0)
|
---|
1094 | // << " " << center_(1) << " " << pixc(1) << endl ;
|
---|
1095 | // for ( uInt irow = 0 ; irow < nrow ; irow++ ) {
|
---|
1096 | // ofs << irow ;
|
---|
1097 | // for ( uInt i = 0 ; i < 2 ; i++ ) {
|
---|
1098 | // ofs << " " << world(i, irow) << " " << pixel(i, irow) ;
|
---|
1099 | // }
|
---|
1100 | // ofs << endl ;
|
---|
1101 | // }
|
---|
1102 | // ofs.close() ;
|
---|
1103 | }
|
---|
1104 |
|
---|
1105 | void STGrid::boxFunc( Vector<Float> &convFunc, Int &convSize )
|
---|
1106 | {
|
---|
1107 | convFunc = 0.0 ;
|
---|
1108 | for ( Int i = 0 ; i < convSize/2 ; i++ )
|
---|
1109 | convFunc(i) = 1.0 ;
|
---|
1110 | }
|
---|
1111 |
|
---|
1112 | #define NEED_UNDERSCORES
|
---|
1113 | #if defined(NEED_UNDERSCORES)
|
---|
1114 | #define grdsf grdsf_
|
---|
1115 | #endif
|
---|
1116 | extern "C" {
|
---|
1117 | void grdsf(Double*, Double*);
|
---|
1118 | }
|
---|
1119 | void STGrid::spheroidalFunc( Vector<Float> &convFunc )
|
---|
1120 | {
|
---|
1121 | convFunc = 0.0 ;
|
---|
1122 | for ( Int i = 0 ; i < convSampling_*convSupport_ ; i++ ) {
|
---|
1123 | Double nu = Double(i) / Double(convSupport_*convSampling_) ;
|
---|
1124 | Double val ;
|
---|
1125 | grdsf( &nu, &val ) ;
|
---|
1126 | convFunc(i) = ( 1.0 - nu * nu ) * val ;
|
---|
1127 | }
|
---|
1128 | }
|
---|
1129 |
|
---|
1130 | void STGrid::gaussFunc( Vector<Float> &convFunc )
|
---|
1131 | {
|
---|
1132 | convFunc = 0.0 ;
|
---|
1133 | // HWHM of the Gaussian is convSupport_ / 4
|
---|
1134 | // To take into account Gaussian tail, kernel cutoff is set to 4 * HWHM
|
---|
1135 | Int len = convSampling_ * convSupport_ ;
|
---|
1136 | Double hwhm = len * 0.25 ;
|
---|
1137 | for ( Int i = 0 ; i < len ; i++ ) {
|
---|
1138 | Double val = Double(i) / hwhm ;
|
---|
1139 | convFunc(i) = exp( -log(2)*val*val ) ;
|
---|
1140 | }
|
---|
1141 | }
|
---|
1142 |
|
---|
1143 | void STGrid::pbFunc( Vector<Float> &convFunc )
|
---|
1144 | {
|
---|
1145 | convFunc = 0.0 ;
|
---|
1146 | }
|
---|
1147 |
|
---|
1148 | void STGrid::setConvFunc( Vector<Float> &convFunc )
|
---|
1149 | {
|
---|
1150 | convSupport_ = userSupport_ ;
|
---|
1151 | if ( convType_ == "BOX" ) {
|
---|
1152 | if ( convSupport_ < 0 )
|
---|
1153 | convSupport_ = 0 ;
|
---|
1154 | Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ;
|
---|
1155 | convFunc.resize( convSize ) ;
|
---|
1156 | boxFunc( convFunc, convSize ) ;
|
---|
1157 | }
|
---|
1158 | else if ( convType_ == "SF" ) {
|
---|
1159 | if ( convSupport_ < 0 )
|
---|
1160 | convSupport_ = 3 ;
|
---|
1161 | Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ;
|
---|
1162 | convFunc.resize( convSize ) ;
|
---|
1163 | spheroidalFunc( convFunc ) ;
|
---|
1164 | }
|
---|
1165 | else if ( convType_ == "GAUSS" ) {
|
---|
1166 | // to take into account Gaussian tail
|
---|
1167 | if ( convSupport_ < 0 )
|
---|
1168 | convSupport_ = 12 ; // 3 * 4
|
---|
1169 | else {
|
---|
1170 | convSupport_ = userSupport_ * 4 ;
|
---|
1171 | }
|
---|
1172 | Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ;
|
---|
1173 | convFunc.resize( convSize ) ;
|
---|
1174 | gaussFunc( convFunc ) ;
|
---|
1175 | }
|
---|
1176 | else if ( convType_ == "PB" ) {
|
---|
1177 | if ( convSupport_ < 0 )
|
---|
1178 | convSupport_ = 0 ;
|
---|
1179 | pbFunc( convFunc ) ;
|
---|
1180 | }
|
---|
1181 | else {
|
---|
1182 | throw AipsError( "Unsupported convolution function" ) ;
|
---|
1183 | }
|
---|
1184 | }
|
---|
1185 |
|
---|
1186 | string STGrid::saveData( string outfile )
|
---|
1187 | {
|
---|
1188 | LogIO os( LogOrigin("STGrid", "saveData", WHERE) ) ;
|
---|
1189 | double t0, t1 ;
|
---|
1190 | t0 = mathutil::gettimeofday_sec() ;
|
---|
1191 |
|
---|
1192 | //Int polno = 0 ;
|
---|
1193 | String outfile_ ;
|
---|
1194 | if ( outfile.size() == 0 ) {
|
---|
1195 | if ( infile_.lastchar() == '/' ) {
|
---|
1196 | outfile_ = infile_.substr( 0, infile_.size()-1 ) ;
|
---|
1197 | }
|
---|
1198 | else {
|
---|
1199 | outfile_ = infile_ ;
|
---|
1200 | }
|
---|
1201 | outfile_ += ".grid" ;
|
---|
1202 | }
|
---|
1203 | else {
|
---|
1204 | outfile_ = outfile ;
|
---|
1205 | }
|
---|
1206 | Table tab ;
|
---|
1207 | prepareTable( tab, outfile_ ) ;
|
---|
1208 | IPosition dshape = data_.shape() ;
|
---|
1209 | Int nrow = nx_ * ny_ * npol_ ;
|
---|
1210 | tab.rwKeywordSet().define( "nPol", npol_ ) ;
|
---|
1211 | tab.addRow( nrow ) ;
|
---|
1212 | Vector<Double> cpix( 2 ) ;
|
---|
1213 | cpix(0) = Double( nx_ - 1 ) * 0.5 ;
|
---|
1214 | cpix(1) = Double( ny_ - 1 ) * 0.5 ;
|
---|
1215 | Vector<Double> dir( 2 ) ;
|
---|
1216 | ArrayColumn<Double> directionCol( tab, "DIRECTION" ) ;
|
---|
1217 | ArrayColumn<Float> spectraCol( tab, "SPECTRA" ) ;
|
---|
1218 | ScalarColumn<uInt> polnoCol( tab, "POLNO" ) ;
|
---|
1219 | Int irow = 0 ;
|
---|
1220 | Vector<Float> sp( nchan_ ) ;
|
---|
1221 | Bool bsp, bdata ;
|
---|
1222 | const Float *data_p = data_.getStorage( bdata ) ;
|
---|
1223 | Float *wsp_p, *sp_p ;
|
---|
1224 | const Float *wdata_p = data_p ;
|
---|
1225 | long step = nx_ * ny_ * npol_ ;
|
---|
1226 | long offset ;
|
---|
1227 | for ( Int iy = 0 ; iy < ny_ ; iy++ ) {
|
---|
1228 | dir(1) = center_(1) - ( cpix(1) - (Double)iy ) * celly_ ;
|
---|
1229 | for ( Int ix = 0 ; ix < nx_ ; ix++ ) {
|
---|
1230 | dir(0) = center_(0) - ( cpix(0) - (Double)ix ) * cellx_ ;
|
---|
1231 | for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) {
|
---|
1232 | offset = ix + iy * nx_ + ipol * nx_ * ny_ ;
|
---|
1233 | //os << "offset = " << offset << LogIO::POST ;
|
---|
1234 | sp_p = sp.getStorage( bsp ) ;
|
---|
1235 | wsp_p = sp_p ;
|
---|
1236 | wdata_p = data_p + offset ;
|
---|
1237 | for ( Int ichan = 0 ; ichan < nchan_ ; ichan++ ) {
|
---|
1238 | *wsp_p = *wdata_p ;
|
---|
1239 | wsp_p++ ;
|
---|
1240 | wdata_p += step ;
|
---|
1241 | }
|
---|
1242 | sp.putStorage( sp_p, bsp ) ;
|
---|
1243 | spectraCol.put( irow, sp ) ;
|
---|
1244 | directionCol.put( irow, dir ) ;
|
---|
1245 | polnoCol.put( irow, pollist_[ipol] ) ;
|
---|
1246 | irow++ ;
|
---|
1247 | }
|
---|
1248 | }
|
---|
1249 | }
|
---|
1250 | data_.freeStorage( data_p, bdata ) ;
|
---|
1251 |
|
---|
1252 | t1 = mathutil::gettimeofday_sec() ;
|
---|
1253 | os << "saveData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
|
---|
1254 |
|
---|
1255 | return outfile_ ;
|
---|
1256 | }
|
---|
1257 |
|
---|
1258 | void STGrid::prepareTable( Table &tab, String &name )
|
---|
1259 | {
|
---|
1260 | Table t( infile_, Table::Old ) ;
|
---|
1261 | t.deepCopy( name, Table::New, False, t.endianFormat(), True ) ;
|
---|
1262 | tab = Table( name, Table::Update ) ;
|
---|
1263 | }
|
---|
1264 |
|
---|
1265 | }
|
---|