source: trunk/src/STGrid.cpp@ 2380

Last change on this file since 2380 was 2380, checked in by Takeshi Nakazato, 13 years ago

New Development: No

JIRA Issue: Yes CAS-2816

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No

Module(s): Module Names change impacts.

Description: Describe your changes here...

Fixed a shape mismatch in row flag data which must have a shape (nrow)
while it was (npol,nrow).


File size: 36.0 KB
Line 
1#include <iostream>
2#include <fstream>
3
4#include <casa/BasicSL/String.h>
5#include <casa/Arrays/Vector.h>
6#include <casa/Arrays/Matrix.h>
7#include <casa/Arrays/Cube.h>
8#include <casa/Arrays/ArrayMath.h>
9#include <casa/Arrays/ArrayIter.h>
10#include <casa/Quanta/Quantum.h>
11#include <casa/Quanta/QuantumHolder.h>
12#include <casa/Utilities/CountedPtr.h>
13#include <casa/Logging/LogIO.h>
14
15#include <tables/Tables/Table.h>
16#include <tables/Tables/TableRecord.h>
17#include <tables/Tables/ExprNode.h>
18#include <tables/Tables/ScalarColumn.h>
19#include <tables/Tables/ArrayColumn.h>
20#include <tables/Tables/TableIter.h>
21
22#include <measures/Measures/MDirection.h>
23
24#include <MathUtils.h>
25
26#include "STGrid.h"
27
28using namespace std ;
29using namespace casa ;
30using namespace asap ;
31
32namespace asap {
33
34// constructor
35STGrid::STGrid()
36{
37 init() ;
38}
39
40STGrid::STGrid( const string infile )
41{
42 init() ;
43
44 setFileIn( infile ) ;
45}
46
47void STGrid::init()
48{
49 ifno_ = -1 ;
50 nx_ = -1 ;
51 ny_ = -1 ;
52 npol_ = 0 ;
53 nchan_ = 0 ;
54 nrow_ = 0 ;
55 cellx_ = 0.0 ;
56 celly_ = 0.0 ;
57 center_ = Vector<Double> ( 2, 0.0 ) ;
58 convType_ = "BOX" ;
59 wtype_ = "UNIFORM" ;
60 convSupport_ = -1 ;
61 userSupport_ = -1 ;
62 convSampling_ = 100 ;
63 nprocessed_ = 0 ;
64 nchunk_ = 0 ;
65}
66
67void STGrid::setFileIn( const string infile )
68{
69 String name( infile ) ;
70 if ( infile_.compare( name ) != 0 ) {
71 infile_ = String( infile ) ;
72 tab_ = Table( infile_ ) ;
73 }
74}
75
76void STGrid::setPolList( vector<unsigned int> pols )
77{
78 pollist_.assign( Vector<uInt>( pols ) ) ;
79 cout << "pollist_ = " << pollist_ << endl ;
80}
81
82void STGrid::setScanList( vector<unsigned int> scans )
83{
84 scanlist_.assign( Vector<uInt>( scans ) ) ;
85 cout << "scanlist_ = " << scanlist_ << endl ;
86}
87
88void STGrid::setWeight( const string wType )
89{
90 wtype_ = String( wType ) ;
91 wtype_.upcase() ;
92 cout << "wtype_ = " << wtype_ << endl ;
93}
94
95void STGrid::defineImage( int nx,
96 int ny,
97 string scellx,
98 string scelly,
99 string scenter )
100{
101 ROArrayColumn<Double> dirCol( tab_, "DIRECTION" ) ;
102 Matrix<Double> direction = dirCol.getColumn() ;
103 Double rmax, rmin, dmax, dmin ;
104 minMax( rmin, rmax, direction.row( 0 ) ) ;
105 minMax( dmin, dmax, direction.row( 1 ) ) ;
106
107 Int npx = (Int)nx ;
108 Int npy = (Int)ny ;
109 String cellx( scellx ) ;
110 String celly( scelly ) ;
111 String center( scenter ) ;
112 setupGrid( npx, npy,
113 cellx, celly,
114 rmin, rmax,
115 dmin, dmax,
116 center ) ;
117}
118
119void STGrid::setFunc( string convType,
120 int convSupport )
121{
122 convType_ = String( convType ) ;
123 convType_.upcase() ;
124 userSupport_ = (Int)convSupport ;
125}
126
127#define NEED_UNDERSCORES
128#if defined(NEED_UNDERSCORES)
129#define ggridsd ggridsd_
130#endif
131extern "C" {
132 void ggridsd(Double*,
133 const Complex*,
134 Int*,
135 Int*,
136 Int*,
137 const Int*,
138 const Int*,
139 const Float*,
140 Int*,
141 Int*,
142 Complex*,
143 Float*,
144 Int*,
145 Int*,
146 Int *,
147 Int *,
148 Int*,
149 Int*,
150 Float*,
151 Int*,
152 Int*,
153 Double*);
154}
155void STGrid::gridPerRow()
156{
157 LogIO os( LogOrigin("STGrid", "gridPerRow", WHERE) ) ;
158 double t0, t1 ;
159
160 // grid parameter
161 os << LogIO::DEBUGGING ;
162 os << "----------" << endl ;
163 os << "Grid parameter summary" << endl ;
164 os << " (nx,ny) = (" << nx_ << "," << ny_ << ")" << endl ;
165 os << " (cellx,celly) = (" << cellx_ << "," << celly_ << ")" << endl ;
166 os << " center = " << center_ << endl ;
167 os << "----------" << LogIO::POST ;
168 os << LogIO::NORMAL ;
169
170 // boolean for getStorage
171 Bool deletePos, deleteData, deleteWgt, deleteFlag, deleteFlagR, deleteConv, deleteDataG, deleteWgtG ;
172
173 // convolution kernel
174 Vector<Float> convFunc ;
175 t0 = mathutil::gettimeofday_sec() ;
176 setConvFunc( convFunc ) ;
177 t1 = mathutil::gettimeofday_sec() ;
178 os << "setConvFunc: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
179 //cout << "convSupport=" << convSupport_ << endl ;
180 //cout << "convFunc=" << convFunc << endl ;
181
182 // grid data
183 Int gnx = nx_ ;
184 Int gny = ny_ ;
185 // Extend grid plane with convSupport_
186// Int gnx = nx_+convSupport_*2 ;
187// Int gny = ny_+convSupport_*2 ;
188 IPosition gshape( 4, gnx, gny, npol_, nchan_ ) ;
189 Array<Complex> gdataArrC( gshape, 0.0 ) ;
190 // 2011/12/20 TN
191 // data_ and gwgtArr share storage
192 data_.resize( gshape ) ;
193 data_ = 0.0 ;
194 Array<Float> gwgtArr( data_ ) ;
195
196 // data storage
197 Int irow = -1 ;
198 IPosition cshape( 3, npol_, nchan_, nchunk_ ) ;
199 IPosition mshape( 2, npol_, nchunk_ ) ;
200 IPosition vshape( 1, nchunk_ ) ;
201 IPosition dshape( 2, 2, nchunk_ ) ;
202 IPosition wshape( 2, nchan_, nchunk_ ) ;
203 Array<Complex> spectra( cshape ) ;
204 Array<Double> direction( dshape ) ;
205 Array<Int> flagtra( cshape ) ;
206 //Array<Int> rflag( mshape ) ;
207 Array<Int> rflag( vshape ) ;
208 Array<Float> weight( wshape ) ;
209 Array<Double> xypos( dshape ) ;
210
211 // parameters for gridding
212 Int idopsf = 0 ;
213 Int *chanMap = new Int[nchan_] ;
214 {
215 Int *work_p = chanMap ;
216 for ( Int i = 0 ; i < nchan_ ; i++ ) {
217 *work_p = i ;
218 work_p++ ;
219 }
220 }
221 Int *polMap = new Int[npol_] ;
222 {
223 Int *work_p = polMap ;
224 for ( Int i = 0 ; i < npol_ ; i++ ) {
225 *work_p = i ;
226 work_p++ ;
227 }
228 }
229 Double *sumw_p = new Double[npol_*nchan_] ;
230 {
231 Double *work_p = sumw_p ;
232 for ( Int i = 0 ; i < npol_*nchan_ ; i++ ) {
233 *work_p = 0.0 ;
234 work_p++ ;
235 }
236 }
237
238 // for performance check
239 double eGetDataChunk = 0.0 ;
240 double eToPixel = 0.0 ;
241 double eGGridSD = 0.0 ;
242
243 // prepare pointer
244 Float *conv_p = convFunc.getStorage( deleteConv ) ;
245 Complex *gdata_p = gdataArrC.getStorage( deleteDataG ) ;
246 Float *wdata_p = gwgtArr.getStorage( deleteWgtG ) ;
247 const Complex *data_p = spectra.getStorage( deleteData ) ;
248 const Float *wgt_p = weight.getStorage( deleteWgt ) ;
249 const Int *flag_p = flagtra.getStorage( deleteFlag ) ;
250 const Int *rflag_p = rflag.getStorage( deleteFlagR ) ;
251 Double *xypos_p = xypos.getStorage( deletePos ) ;
252
253 while( !pastEnd() ) {
254 // retrieve data
255 t0 = mathutil::gettimeofday_sec() ;
256 Int nrow = getDataChunk( spectra, direction, flagtra, rflag, weight ) ;
257 //os << "nrow = " << nrow << LogIO::POST ;
258 t1 = mathutil::gettimeofday_sec() ;
259 eGetDataChunk += t1-t0 ;
260
261 // world -> pixel
262 t0 = mathutil::gettimeofday_sec() ;
263 toPixel( direction, xypos ) ;
264 t1 = mathutil::gettimeofday_sec() ;
265 eToPixel += t1-t0 ;
266
267 // call ggridsd
268 irow = -1 ;
269 t0 = mathutil::gettimeofday_sec() ;
270 ggridsd( xypos_p,
271 data_p,
272 &npol_,
273 &nchan_,
274 &idopsf,
275 flag_p,
276 rflag_p,
277 wgt_p,
278 &nrow,
279 &irow,
280 gdata_p,
281 wdata_p,
282 &gnx,
283 &gny,
284 &npol_,
285 &nchan_,
286 &convSupport_,
287 &convSampling_,
288 conv_p,
289 chanMap,
290 polMap,
291 sumw_p ) ;
292 t1 = mathutil::gettimeofday_sec() ;
293 eGGridSD += t1-t0 ;
294
295 }
296 os << "getDataChunk: elapsed time is " << eGetDataChunk << " sec." << LogIO::POST ;
297 os << "toPixel: elapsed time is " << eToPixel << " sec." << LogIO::POST ;
298 os << "ggridsd: elapsed time is " << eGGridSD << " sec." << LogIO::POST ;
299
300
301 // finalization
302 convFunc.putStorage( conv_p, deleteConv ) ;
303 gdataArrC.putStorage( gdata_p, deleteDataG ) ;
304 gwgtArr.putStorage( wdata_p, deleteWgtG ) ;
305 xypos.putStorage( xypos_p, deletePos ) ;
306 spectra.freeStorage( data_p, deleteData ) ;
307 weight.freeStorage( wgt_p, deleteWgt ) ;
308 flagtra.freeStorage( flag_p, deleteFlag ) ;
309 rflag.freeStorage( rflag_p, deleteFlagR ) ;
310 delete polMap ;
311 delete chanMap ;
312 delete sumw_p ;
313
314 // set data
315 setData( gdataArrC, gwgtArr ) ;
316
317}
318
319Bool STGrid::pastEnd()
320{
321 LogIO os( LogOrigin("STGrid","pastEnd",WHERE) ) ;
322 Bool b = nprocessed_ >= nrow_ ;
323 return b ;
324}
325
326void STGrid::grid()
327{
328 // data selection
329 selectData() ;
330 setupArray() ;
331 sortData() ;
332
333 if ( npol_ > 1 ) {
334 LogIO os( LogOrigin("STGrid", "grid", WHERE) ) ;
335 os << LogIO::WARN << "STGrid doesn't support assigning polarization-dependent weight. Use averaged weight over polarization." << LogIO::POST ;
336 }
337
338 if ( wtype_.compare("UNIFORM") != 0 &&
339 wtype_.compare("TINT") != 0 &&
340 wtype_.compare("TINTSYS") != 0 ) {
341 LogIO os( LogOrigin("STGrid", "grid", WHERE) ) ;
342 os << LogIO::WARN << "Unsupported weight type '" << wtype_ << "', apply UNIFORM weight" << LogIO::POST ;
343 wtype_ = "UNIFORM" ;
344 }
345
346 Bool doAll = examine() ;
347
348 if ( doAll )
349 gridAll() ;
350 else
351 gridPerRow() ;
352}
353
354Bool STGrid::examine()
355{
356 // TODO: nchunk_ must be determined from nchan_, npol_, and (nx_,ny_)
357 // by considering data size to be allocated for ggridsd input/output
358 nchunk_ = 100 ;
359 Bool b = nchunk_ >= nrow_ ;
360 return b ;
361}
362
363void STGrid::gridAll()
364{
365 LogIO os( LogOrigin("STGrid", "grid", WHERE) ) ;
366
367 // retrieve data
368 Array<Complex> spectra ;
369 Array<Double> direction ;
370 Array<Int> flagtra ;
371 Array<Int> rflag ;
372 Array<Float> weight ;
373 double t0, t1 ;
374 t0 = mathutil::gettimeofday_sec() ;
375 getData( spectra, direction, flagtra, rflag, weight ) ;
376 t1 = mathutil::gettimeofday_sec() ;
377 os << "getData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
378 IPosition sshape = spectra.shape() ;
379 //os << "spectra.shape()=" << spectra.shape() << LogIO::POST ;
380 //os << "max(spectra) = " << max(spectra) << LogIO::POST ;
381 //os << "weight = " << weight << LogIO::POST ;
382
383 // grid parameter
384 os << LogIO::DEBUGGING ;
385 os << "----------" << endl ;
386 os << "Grid parameter summary" << endl ;
387 os << " (nx,ny) = (" << nx_ << "," << ny_ << ")" << endl ;
388 os << " (cellx,celly) = (" << cellx_ << "," << celly_ << ")" << endl ;
389 os << " center = " << center_ << endl ;
390 os << "----------" << LogIO::POST ;
391 os << LogIO::NORMAL ;
392
393 // convolution kernel
394 Vector<Float> convFunc ;
395 t0 = mathutil::gettimeofday_sec() ;
396 setConvFunc( convFunc ) ;
397 t1 = mathutil::gettimeofday_sec() ;
398 os << "setConvFunc: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
399 //cout << "convSupport=" << convSupport_ << endl ;
400 //cout << "convFunc=" << convFunc << endl ;
401
402 // world -> pixel
403 Array<Double> xypos( direction.shape(), 0.0 ) ;
404 t0 = mathutil::gettimeofday_sec() ;
405 toPixel( direction, xypos ) ;
406 t1 = mathutil::gettimeofday_sec() ;
407 //os << "xypos=" << xypos << LogIO::POST ;
408 os << "toPixel: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
409
410 // call ggridsd
411 Bool deletePos, deleteData, deleteWgt, deleteFlag, deleteFlagR, deleteConv, deleteDataG, deleteWgtG ;
412 Double *xypos_p = xypos.getStorage( deletePos ) ;
413 const Complex *data_p = spectra.getStorage( deleteData ) ;
414 const Float *wgt_p = weight.getStorage( deleteWgt ) ;
415 //const Int *flag_p = flagI.getStorage( deleteFlag ) ;
416 //const Int *rflag_p = rflagI.getStorage( deleteFlagR ) ;
417 const Int *flag_p = flagtra.getStorage( deleteFlag ) ;
418 const Int *rflag_p = rflag.getStorage( deleteFlagR ) ;
419 Float *conv_p = convFunc.getStorage( deleteConv ) ;
420 // Extend grid plane with convSupport_
421 Int gnx = nx_ ;
422 Int gny = ny_ ;
423// Int gnx = nx_+convSupport_*2 ;
424// Int gny = ny_+convSupport_*2 ;
425 IPosition gshape( 4, gnx, gny, npol_, nchan_ ) ;
426 Array<Complex> gdataArrC( gshape, 0.0 ) ;
427 //Array<Float> gwgtArr( gshape, 0.0 ) ;
428 // 2011/12/20 TN
429 // data_ and weight array shares storage
430 data_.resize( gshape ) ;
431 data_ = 0.0 ;
432 Array<Float> gwgtArr( data_ ) ;
433 Complex *gdata_p = gdataArrC.getStorage( deleteDataG ) ;
434 Float *wdata_p = gwgtArr.getStorage( deleteWgtG ) ;
435 Int idopsf = 0 ;
436 Int *chanMap = new Int[nchan_] ;
437 {
438 Int *work_p = chanMap ;
439 for ( Int i = 0 ; i < nchan_ ; i++ ) {
440 *work_p = i ;
441 work_p++ ;
442 }
443 }
444 Int *polMap = new Int[npol_] ;
445 {
446 Int *work_p = polMap ;
447 for ( Int i = 0 ; i < npol_ ; i++ ) {
448 *work_p = i ;
449 work_p++ ;
450 }
451 }
452 Double *sumw_p = new Double[npol_*nchan_] ;
453 {
454 Double *work_p = sumw_p ;
455 for ( Int i = 0 ; i < npol_*nchan_ ; i++ ) {
456 *work_p = 0.0 ;
457 work_p++ ;
458 }
459 }
460 t0 = mathutil::gettimeofday_sec() ;
461 Int irow = -1 ;
462 ggridsd( xypos_p,
463 data_p,
464 &npol_,
465 &nchan_,
466 &idopsf,
467 flag_p,
468 rflag_p,
469 wgt_p,
470 &nrow_,
471 &irow,
472 gdata_p,
473 wdata_p,
474 &gnx,
475 &gny,
476 &npol_,
477 &nchan_,
478 &convSupport_,
479 &convSampling_,
480 conv_p,
481 chanMap,
482 polMap,
483 sumw_p ) ;
484 t1 = mathutil::gettimeofday_sec() ;
485 os << "ggridsd: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
486 xypos.putStorage( xypos_p, deletePos ) ;
487 spectra.freeStorage( data_p, deleteData ) ;
488 weight.freeStorage( wgt_p, deleteWgt ) ;
489 flagtra.freeStorage( flag_p, deleteFlag ) ;
490 rflag.freeStorage( rflag_p, deleteFlagR ) ;
491 convFunc.putStorage( conv_p, deleteConv ) ;
492 delete polMap ;
493 delete chanMap ;
494 gdataArrC.putStorage( gdata_p, deleteDataG ) ;
495 gwgtArr.putStorage( wdata_p, deleteWgtG ) ;
496 setData( gdataArrC, gwgtArr ) ;
497 //Matrix<Double> sumWeight( IPosition( 2, npol_, nchan_ ), sumw_p, TAKE_OVER ) ;
498 delete sumw_p ;
499 //cout << "sumWeight = " << sumWeight << endl ;
500// os << "gdataArr = " << gdataArr << LogIO::POST ;
501// os << "gwgtArr = " << gwgtArr << LogIO::POST ;
502// os << "data_ " << data_ << LogIO::POST ;
503}
504
505void STGrid::setData( Array<Complex> &gdata,
506 Array<Float> &gwgt )
507{
508 // 2011/12/20 TN
509 // gwgt and data_ share storage
510 LogIO os( LogOrigin("STGrid","setData",WHERE) ) ;
511 double t0, t1 ;
512 t0 = mathutil::gettimeofday_sec() ;
513 uInt len = data_.nelements() ;
514 const Complex *w1_p ;
515 Float *w2_p ;
516 Bool b1, b2 ;
517 const Complex *gdata_p = gdata.getStorage( b1 ) ;
518 Float *gwgt_p = data_.getStorage( b2 ) ;
519 w1_p = gdata_p ;
520 w2_p = gwgt_p ;
521 for ( uInt i = 0 ; i < len ; i++ ) {
522 if ( *w2_p > 0.0 ) *w2_p = (*w1_p).real() / *w2_p ;
523 w1_p++ ;
524 w2_p++ ;
525 }
526 gdata.freeStorage( gdata_p, b1 ) ;
527 data_.putStorage( gwgt_p, b2 ) ;
528 t1 = mathutil::gettimeofday_sec() ;
529 os << "setData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
530}
531
532void STGrid::setupGrid( Int &nx,
533 Int &ny,
534 String &cellx,
535 String &celly,
536 Double &xmin,
537 Double &xmax,
538 Double &ymin,
539 Double &ymax,
540 String &center )
541{
542 LogIO os( LogOrigin("STGrid","setupGrid",WHERE) ) ;
543 //cout << "nx=" << nx << ", ny=" << ny << endl ;
544
545 // center position
546 if ( center.size() == 0 ) {
547 center_(0) = 0.5 * ( xmin + xmax ) ;
548 center_(1) = 0.5 * ( ymin + ymax ) ;
549 }
550 else {
551 String::size_type pos0 = center.find( " " ) ;
552 if ( pos0 == String::npos ) {
553 throw AipsError( "bad string format in parameter center" ) ;
554 }
555 String::size_type pos1 = center.find( " ", pos0+1 ) ;
556 String typestr, xstr, ystr ;
557 if ( pos1 != String::npos ) {
558 typestr = center.substr( 0, pos0 ) ;
559 xstr = center.substr( pos0+1, pos1-pos0 ) ;
560 ystr = center.substr( pos1+1 ) ;
561 // todo: convert to J2000 (or direction ref for DIRECTION column)
562 }
563 else {
564 typestr = "J2000" ;
565 xstr = center.substr( 0, pos0 ) ;
566 ystr = center.substr( pos0+1 ) ;
567 }
568 QuantumHolder qh ;
569 String err ;
570 qh.fromString( err, xstr ) ;
571 Quantum<Double> xcen = qh.asQuantumDouble() ;
572 qh.fromString( err, ystr ) ;
573 Quantum<Double> ycen = qh.asQuantumDouble() ;
574 center_(0) = xcen.getValue( "rad" ) ;
575 center_(1) = ycen.getValue( "rad" ) ;
576 }
577
578
579 nx_ = nx ;
580 ny_ = ny ;
581 if ( nx < 0 && ny > 0 ) {
582 nx_ = ny ;
583 ny_ = ny ;
584 }
585 if ( ny < 0 && nx > 0 ) {
586 nx_ = nx ;
587 ny_ = nx ;
588 }
589
590 //Double wx = xmax - xmin ;
591 //Double wy = ymax - ymin ;
592 Double wx = max( abs(xmax-center_(0)), abs(xmin-center_(0)) ) * 2 ;
593 Double wy = max( abs(ymax-center_(1)), abs(ymin-center_(1)) ) * 2 ;
594 // take 10% margin
595 wx *= 1.10 ;
596 wy *= 1.10 ;
597
598 Quantum<Double> qcellx ;
599 Quantum<Double> qcelly ;
600 //cout << "nx_ = " << nx_ << ", ny_ = " << ny_ << endl ;
601 if ( cellx.size() != 0 && celly.size() != 0 ) {
602 readQuantity( qcellx, cellx ) ;
603 readQuantity( qcelly, celly ) ;
604 }
605 else if ( celly.size() != 0 ) {
606 os << "Using celly to x-axis..." << LogIO::POST ;
607 readQuantity( qcelly, celly ) ;
608 qcellx = qcelly ;
609 }
610 else if ( cellx.size() != 0 ) {
611 os << "Using cellx to y-axis..." << LogIO::POST ;
612 readQuantity( qcellx, cellx ) ;
613 qcelly = qcellx ;
614 }
615 else {
616 if ( nx_ < 0 ) {
617 os << "No user preference in grid setting. Using default..." << LogIO::POST ;
618 readQuantity( qcellx, "1.0arcmin" ) ;
619 qcelly = qcellx ;
620 }
621 else {
622 if ( wx == 0.0 ) {
623 os << "Using default spatial extent (10arcmin) in x" << LogIO::POST ;
624 wx = 0.00290888 ;
625 }
626 if ( wy == 0.0 ) {
627 os << "Using default spatial extent (10arcmin) in y" << LogIO::POST ;
628 wy = 0.00290888 ;
629 }
630 qcellx = Quantum<Double>( wx/nx_, "rad" ) ;
631 qcelly = Quantum<Double>( wy/ny_, "rad" ) ;
632 }
633 }
634 cellx_ = qcellx.getValue( "rad" ) ;
635 celly_ = qcelly.getValue( "rad" ) ;
636 if ( nx_ < 0 ) {
637 if ( wx == 0.0 ) {
638 os << "Using default spatial extent (10arcmin) in x" << LogIO::POST ;
639 wx = 0.00290888 ;
640 }
641 if ( wy == 0.0 ) {
642 os << "Using default spatial extent (10arcmin) in y" << LogIO::POST ;
643 wy = 0.00290888 ;
644 }
645 nx_ = Int( ceil( wx/cellx_ ) ) ;
646 ny_ = Int( ceil( wy/celly_ ) ) ;
647 }
648}
649
650void STGrid::selectData()
651{
652 Int ifno = ifno_ ;
653 Table taborg( infile_ ) ;
654 if ( ifno == -1 ) {
655 LogIO os( LogOrigin("STGrid","selectData",WHERE) ) ;
656// os << LogIO::SEVERE
657// << "Please set IFNO before actual gridding"
658// << LogIO::EXCEPTION ;
659 ROScalarColumn<uInt> ifnoCol( taborg, "IFNO" ) ;
660 ifno = ifnoCol( 0 ) ;
661 os << LogIO::WARN
662 << "IFNO is not given. Using default IFNO: " << ifno << LogIO::POST ;
663 }
664// tab = taborg( taborg.col("IFNO") == ifno ) ;
665 TableExprNode node ;
666 node = taborg.col("IFNO") == ifno ;
667 if ( scanlist_.size() > 0 ) {
668 node = node && taborg.col("SCANNO").in( scanlist_ ) ;
669 }
670 tab_ = taborg( node ) ;
671 if ( tab_.nrow() == 0 ) {
672 LogIO os( LogOrigin("STGrid","selectData",WHERE) ) ;
673 os << LogIO::SEVERE
674 << "No corresponding rows for given selection: IFNO " << ifno ;
675 if ( scanlist_.size() > 0 )
676 os << " SCANNO " << scanlist_ ;
677 os << LogIO::EXCEPTION ;
678 }
679 attach() ;
680}
681
682void STGrid::attach()
683{
684 // attach to table
685 spectraCol_.attach( tab_, "SPECTRA" ) ;
686 flagtraCol_.attach( tab_, "FLAGTRA" ) ;
687 directionCol_.attach( tab_, "DIRECTION" ) ;
688 flagRowCol_.attach( tab_, "FLAGROW" ) ;
689 tsysCol_.attach( tab_, "TSYS" ) ;
690 intervalCol_.attach( tab_, "INTERVAL" ) ;
691}
692
693void STGrid::getData( Array<Complex> &spectra,
694 Array<Double> &direction,
695 Array<uChar> &flagtra,
696 Array<uInt> &rflag,
697 Array<Float> &weight )
698{
699 LogIO os( LogOrigin("STGrid","getData",WHERE) ) ;
700// os << "start" << LogIO::POST ;
701// os << "npol_ = " << npol_ << LogIO::POST ;
702// os << "nchan_ = " << nchan_ << LogIO::POST ;
703// os << "nrow_ = " << nrow_ << LogIO::POST ;
704 IPosition cshape( 3, npol_, nchan_, nrow_ ) ;
705 IPosition mshape( 2, npol_, nrow_ ) ;
706 IPosition vshape( 1, nrow_ ) ;
707 spectra.resize( cshape ) ;
708 flagtra.resize( cshape ) ;
709 rflag.resize( vshape ) ;
710 Vector<uInt> rflagPerPol( rflag ) ;
711 direction.resize( IPosition(2,2,nrow_) ) ;
712 Array<Float> tsys( cshape ) ;
713 Array<Double> tint( mshape ) ;
714
715 ArrayIterator<uChar> fli( flagtra, IPosition(2,1,2) ) ;
716 ArrayIterator<Float> tsi( tsys, IPosition(2,1,2) ) ;
717 ArrayIterator<Double> tii( tint, IPosition(1,1) ) ;
718
719 // boolean for pointer access
720 Bool bsp, bsps ;
721 // pointer to the data
722 Complex *sp_p = spectra.getStorage( bsp ) ;
723 // working pointer
724 Complex *wsp_p = sp_p ;
725 uInt len = nchan_ * nrow_ ;
726 IPosition mshape2( 2, nchan_, nrow_ ) ;
727 Vector<Float> spSlice( nchan_ ) ;
728 const Float *sps_p = spSlice.getStorage( bsps ) ;
729 long cincr = npol_ ;
730 long rincr = npol_ * nchan_ ;
731 for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) {
732 Table subt = tab_( tab_.col("POLNO") == pollist_[ipol] ) ;
733 ROArrayColumn<Float> spectraCol( subt, "SPECTRA" ) ;
734 ROArrayColumn<Double> directionCol( subt, "DIRECTION" ) ;
735 ROArrayColumn<uChar> flagtraCol( subt, "FLAGTRA" ) ;
736 ROScalarColumn<uInt> rflagCol( subt, "FLAGROW" ) ;
737 ROArrayColumn<Float> tsysCol( subt, "TSYS" ) ;
738 ROScalarColumn<Double> tintCol( subt, "INTERVAL" ) ;
739 for ( Int irow = 0 ; irow < nrow_ ; irow++ ) {
740 spectraCol.get( irow, spSlice ) ;
741 const Float *wsps_p = sps_p ;
742 wsp_p = sp_p + (long)ipol + rincr * (long)irow ;
743 for ( Int ichan = 0 ; ichan < nchan_ ; ichan++ ) {
744 *wsp_p = *wsps_p ;
745 wsps_p++ ;
746 wsp_p += cincr ;
747 }
748 }
749 Array<uChar> flSlice = fli.array() ;
750 flagtraCol.getColumn( flSlice ) ;
751 if ( ipol == 0 ) {
752 directionCol.getColumn( direction ) ;
753 rflagCol.getColumn( rflagPerPol ) ;
754 }
755 else {
756 rflagPerPol += rflagCol.getColumn() ;
757 }
758 Vector<Float> tmpF = tsysCol( 0 ) ;
759 Array<Float> tsSlice = tsi.array() ;
760 if ( tmpF.nelements() == (uInt)nchan_ ) {
761 tsysCol.getColumn( tsSlice ) ;
762 }
763 else {
764 tsSlice = tmpF( 0 ) ;
765 }
766 Vector<Double> tmpD = tii.array() ;
767 tintCol.getColumn( tmpD ) ;
768
769 wsp_p += len ;
770
771 fli.next() ;
772 tsi.next() ;
773 tii.next() ;
774 }
775 spSlice.freeStorage( sps_p, bsps ) ;
776 spectra.putStorage( sp_p, bsp ) ;
777
778// os << "spectra=" << spectra << LogIO::POST ;
779// os << "flagtra=" << flagtra << LogIO::POST ;
780// os << "rflag=" << rflag << LogIO::POST ;
781// os << "direction=" << direction << LogIO::POST ;
782
783 weight.resize( IPosition(2,nchan_,nrow_) ) ;
784 getWeight( weight, tsys, tint ) ;
785}
786
787void STGrid::getData( Array<Complex> &spectra,
788 Array<Double> &direction,
789 Array<Int> &flagtra,
790 Array<Int> &rflag,
791 Array<Float> &weight )
792{
793 LogIO os( LogOrigin("STGrid","getData",WHERE) ) ;
794 double t0, t1 ;
795
796 Array<uChar> flagUC ;
797 Array<uInt> rflagUI ;
798 getData( spectra, direction, flagUC, rflagUI, weight ) ;
799
800 t0 = mathutil::gettimeofday_sec() ;
801 toInt( flagUC, flagtra ) ;
802 toInt( rflagUI, rflag ) ;
803 t1 = mathutil::gettimeofday_sec() ;
804 os << "toInt: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
805}
806
807Int STGrid::getDataChunk( Array<Complex> &spectra,
808 Array<Double> &direction,
809 Array<Int> &flagtra,
810 Array<Int> &rflag,
811 Array<Float> &weight )
812{
813 Array<Float> spFloat( spectra.shape() ) ;
814 Array<uChar> fluChar( flagtra.shape() ) ;
815 Array<uInt> fruInt( rflag.shape() ) ;
816 Int nrow = getDataChunk( spFloat, direction, fluChar, fruInt, weight ) ;
817 convertArray( spectra, spFloat ) ;
818 convertArray( flagtra, fluChar ) ;
819 convertArray( rflag, fruInt ) ;
820
821 return nrow ;
822}
823
824Int STGrid::getDataChunk( Array<Float> &spectra,
825 Array<Double> &direction,
826 Array<uChar> &flagtra,
827 Array<uInt> &rflag,
828 Array<Float> &weight )
829{
830 LogIO os( LogOrigin("STGrid","getDataChunk",WHERE) ) ;
831 Int nrow = min( spectra.shape()[2], nrow_-nprocessed_ ) ;
832 Array<Float> tsys( spectra.shape() ) ;
833 //Array<Double> tint( rflag.shape() ) ;
834 Array<Double> tint( IPosition(2,spectra.shape()[0],spectra.shape()[2]) ) ;
835 IPosition m( 2, 0, 2 ) ;
836 IPosition v( 1, 0 ) ;
837 ArrayIterator<Float> spi( spectra, m, False ) ;
838 ArrayIterator<uChar> fli( flagtra, m, False ) ;
839 ArrayIterator<Float> tsi( tsys, m, False ) ;
840 ArrayIterator<Double> di( direction, v ) ;
841 Bool bfr, bti ;
842 uInt *fr_p = rflag.getStorage( bfr ) ;
843 Double *ti_p = tint.getStorage( bti ) ;
844 uInt *wfr_p = fr_p ;
845 Double *wti_p = ti_p ;
846 Int offset = nprocessed_ * npol_ ;
847 for ( Int irow = 0 ; irow < npol_ * nrow ; irow++ ) {
848 Array<Float> spSlice = spi.array() ;
849 Array<uChar> flSlice = fli.array() ;
850 Array<Float> tsSlice = tsi.array() ;
851
852 uInt idx = rows_[offset+irow] ;
853 spectraCol_.get( idx, spSlice ) ;
854
855 flagtraCol_.get( idx, flSlice ) ;
856 Vector<Float> tmpF = tsysCol_( idx ) ;
857 if ( tmpF.nelements() == (uInt)nchan_ ) {
858 tsSlice = tmpF ;
859 }
860 else {
861 tsSlice = tmpF[0] ;
862 }
863 *wti_p = intervalCol_( idx ) ;
864
865 spi.next() ;
866 fli.next() ;
867 tsi.next() ;
868 wti_p++ ;
869 }
870 tint.putStorage( ti_p, bti ) ;
871
872 for ( Int irow = 0 ; irow < nrow ; irow += npol_ ) {
873 uInt idx = rows_[offset+irow] ;
874 directionCol_.get( idx, di.array() ) ;
875 di.next() ;
876
877 *wfr_p = flagRowCol_( idx ) ;
878 for ( Int ipol = 1 ; ipol < npol_ ; ipol++ ) {
879 *wfr_p = max( *wfr_p, flagRowCol_( rows_[offset+irow+ipol] ) ) ;
880 }
881 wfr_p++ ;
882 }
883 rflag.putStorage( fr_p, bfr ) ;
884
885 getWeight( weight, tsys, tint ) ;
886
887 nprocessed_ += nrow ;
888
889 return nrow ;
890}
891
892void STGrid::setupArray()
893{
894 LogIO os( LogOrigin("STGrid","setupArray",WHERE) ) ;
895 ROScalarColumn<uInt> polnoCol( tab_, "POLNO" ) ;
896 Vector<uInt> pols = polnoCol.getColumn() ;
897 //os << pols << LogIO::POST ;
898 Vector<uInt> pollistOrg ;
899 uInt npolOrg = 0 ;
900 uInt polno ;
901 for ( uInt i = 0 ; i < polnoCol.nrow() ; i++ ) {
902 //polno = polnoCol( i ) ;
903 polno = pols( i ) ;
904 if ( allNE( pollistOrg, polno ) ) {
905 pollistOrg.resize( npolOrg+1, True ) ;
906 pollistOrg[npolOrg] = polno ;
907 npolOrg++ ;
908 }
909 }
910 if ( pollist_.size() == 0 )
911 pollist_ = pollistOrg ;
912 else {
913 Vector<uInt> newlist ;
914 uInt newsize = 0 ;
915 for ( uInt i = 0 ; i < pollist_.size() ; i++ ) {
916 if ( anyEQ( pollistOrg, pollist_[i] ) ) {
917 newlist.resize( newsize+1, True ) ;
918 newlist[newsize] = pollist_[i] ;
919 newsize++ ;
920 }
921 }
922 pollist_.assign( newlist ) ;
923 }
924 npol_ = pollist_.size() ;
925 if ( npol_ == 0 ) {
926 os << LogIO::SEVERE << "Empty pollist" << LogIO::EXCEPTION ;
927 }
928 nrow_ = tab_.nrow() / npolOrg ;
929 ROArrayColumn<uChar> tmpCol( tab_, "FLAGTRA" ) ;
930 nchan_ = tmpCol( 0 ).nelements() ;
931// os << "npol_ = " << npol_ << "(" << pollist_ << ")" << endl
932// << "nchan_ = " << nchan_ << endl
933// << "nrow_ = " << nrow_ << LogIO::POST ;
934}
935
936void STGrid::getWeight( Array<Float> &w,
937 Array<Float> &tsys,
938 Array<Double> &tint )
939{
940 LogIO os( LogOrigin("STGrid","getWeight",WHERE) ) ;
941// double t0, t1 ;
942// t0 = mathutil::gettimeofday_sec() ;
943 // resize
944 IPosition refShape = tsys.shape() ;
945 Int nchan = refShape[1] ;
946 Int nrow = refShape[2] ;
947
948 // set weight
949 if ( wtype_.compare( "UNIFORM" ) == 0 ) {
950 w = 1.0 ;
951 }
952 else if ( wtype_.compare( "TINT" ) == 0 ) {
953 Bool b0, b1 ;
954 Float *w_p = w.getStorage( b0 ) ;
955 Float *w0_p = w_p ;
956 const Double *ti_p = tint.getStorage( b1 ) ;
957 const Double *w1_p = ti_p ;
958 for ( Int irow = 0 ; irow < nrow ; irow++ ) {
959 Float val = (Float)(polMean( w1_p )) ;
960 for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) {
961 *w0_p = val ;
962 w0_p++ ;
963 }
964 }
965 w.putStorage( w_p, b0 ) ;
966 tint.freeStorage( ti_p, b1 ) ;
967 }
968 else if ( wtype_.compare( "TSYS" ) == 0 ) {
969 Bool b0, b1 ;
970 Float *w_p = w.getStorage( b0 ) ;
971 Float *w0_p = w_p ;
972 const Float *ts_p = tsys.getStorage( b1 ) ;
973 const Float *w1_p = ts_p ;
974 for ( Int irow = 0 ; irow < nrow ; irow++ ) {
975 for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) {
976 Float val = polMean( w1_p ) ;
977 *w0_p = 1.0 / ( val * val ) ;
978 w0_p++ ;
979 }
980 }
981 w.putStorage( w_p, b0 ) ;
982 tsys.freeStorage( ts_p, b1 ) ;
983 }
984 else if ( wtype_.compare( "TINTSYS" ) == 0 ) {
985 Bool b0, b1, b2 ;
986 Float *w_p = w.getStorage( b0 ) ;
987 Float *w0_p = w_p ;
988 const Double *ti_p = tint.getStorage( b1 ) ;
989 const Double *w1_p = ti_p ;
990 const Float *ts_p = tsys.getStorage( b2 ) ;
991 const Float *w2_p = ts_p ;
992 for ( Int irow = 0 ; irow < nrow ; irow++ ) {
993 Float interval = (Float)(polMean( w1_p )) ;
994 for ( Int ichan = 0 ; ichan < nchan ; ichan++ ) {
995 Float temp = polMean( w2_p ) ;
996 *w0_p = interval / ( temp * temp ) ;
997 w0_p++ ;
998 }
999 }
1000 w.putStorage( w_p, b0 ) ;
1001 tint.freeStorage( ti_p, b1 ) ;
1002 tsys.freeStorage( ts_p, b2 ) ;
1003 }
1004 else {
1005 //LogIO os( LogOrigin("STGrid", "getWeight", WHERE) ) ;
1006 //os << LogIO::WARN << "Unsupported weight type '" << wtype_ << "', apply UNIFORM weight" << LogIO::POST ;
1007 w = 1.0 ;
1008 }
1009
1010// t1 = mathutil::gettimeofday_sec() ;
1011// os << "getWeight: elapsed time is " << t1-t0 << " sec" << LogIO::POST ;
1012}
1013
1014Float STGrid::polMean( const Float *p )
1015{
1016 Float v = 0.0 ;
1017 for ( Int i = 0 ; i < npol_ ; i++ ) {
1018 v += *p ;
1019 p++ ;
1020 }
1021 v /= npol_ ;
1022 return v ;
1023}
1024
1025Double STGrid::polMean( const Double *p )
1026{
1027 Double v = 0.0 ;
1028 for ( Int i = 0 ; i < npol_ ; i++ ) {
1029 v += *p ;
1030 p++ ;
1031 }
1032 v /= npol_ ;
1033 return v ;
1034}
1035
1036void STGrid::toInt( Array<uChar> &u, Array<Int> &v )
1037{
1038 uInt len = u.nelements() ;
1039 Int *int_p = new Int[len] ;
1040 Bool deleteIt ;
1041 const uChar *data_p = u.getStorage( deleteIt ) ;
1042 Int *i_p = int_p ;
1043 const uChar *u_p = data_p ;
1044 for ( uInt i = 0 ; i < len ; i++ ) {
1045 *i_p = ( *u_p == 0 ) ? 0 : 1 ;
1046 i_p++ ;
1047 u_p++ ;
1048 }
1049 u.freeStorage( data_p, deleteIt ) ;
1050 v.takeStorage( u.shape(), int_p, TAKE_OVER ) ;
1051}
1052
1053void STGrid::toInt( Array<uInt> &u, Array<Int> &v )
1054{
1055 uInt len = u.nelements() ;
1056 Int *int_p = new Int[len] ;
1057 Bool deleteIt ;
1058 const uInt *data_p = u.getStorage( deleteIt ) ;
1059 Int *i_p = int_p ;
1060 const uInt *u_p = data_p ;
1061 for ( uInt i = 0 ; i < len ; i++ ) {
1062 *i_p = ( *u_p == 0 ) ? 0 : 1 ;
1063 i_p++ ;
1064 u_p++ ;
1065 }
1066 u.freeStorage( data_p, deleteIt ) ;
1067 v.takeStorage( u.shape(), int_p, TAKE_OVER ) ;
1068}
1069
1070void STGrid::toPixel( Array<Double> &world, Array<Double> &pixel )
1071{
1072 // gridding will be done on (nx_+2*convSupport_) x (ny_+2*convSupport_)
1073 // grid plane to avoid unexpected behavior on grid edge
1074 Block<Double> pixc( 2 ) ;
1075 pixc[0] = Double( nx_-1 ) * 0.5 ;
1076 pixc[1] = Double( ny_-1 ) * 0.5 ;
1077// pixc[0] = Double( nx_+2*convSupport_-1 ) * 0.5 ;
1078// pixc[1] = Double( ny_+2*convSupport_-1 ) * 0.5 ;
1079 uInt nrow = world.shape()[1] ;
1080 Bool bw, bp ;
1081 const Double *w_p = world.getStorage( bw ) ;
1082 Double *p_p = pixel.getStorage( bp ) ;
1083 const Double *ww_p = w_p ;
1084 Double *wp_p = p_p ;
1085 for ( uInt i = 0 ; i < nrow ; i++ ) {
1086 *wp_p = pixc[0] + ( *ww_p - center_[0] ) / cellx_ ;
1087 wp_p++ ;
1088 ww_p++ ;
1089 *wp_p = pixc[1] + ( *ww_p - center_[1] ) / celly_ ;
1090 wp_p++ ;
1091 ww_p++ ;
1092 }
1093 world.freeStorage( w_p, bw ) ;
1094 pixel.putStorage( p_p, bp ) ;
1095// String gridfile = "grid."+convType_+"."+String::toString(convSupport_)+".dat" ;
1096// ofstream ofs( gridfile.c_str(), ios::out ) ;
1097// ofs << "center " << center_(0) << " " << pixc(0)
1098// << " " << center_(1) << " " << pixc(1) << endl ;
1099// for ( uInt irow = 0 ; irow < nrow ; irow++ ) {
1100// ofs << irow ;
1101// for ( uInt i = 0 ; i < 2 ; i++ ) {
1102// ofs << " " << world(i, irow) << " " << pixel(i, irow) ;
1103// }
1104// ofs << endl ;
1105// }
1106// ofs.close() ;
1107}
1108
1109void STGrid::boxFunc( Vector<Float> &convFunc, Int &convSize )
1110{
1111 convFunc = 0.0 ;
1112 for ( Int i = 0 ; i < convSize/2 ; i++ )
1113 convFunc(i) = 1.0 ;
1114}
1115
1116#define NEED_UNDERSCORES
1117#if defined(NEED_UNDERSCORES)
1118#define grdsf grdsf_
1119#endif
1120extern "C" {
1121 void grdsf(Double*, Double*);
1122}
1123void STGrid::spheroidalFunc( Vector<Float> &convFunc )
1124{
1125 convFunc = 0.0 ;
1126 for ( Int i = 0 ; i < convSampling_*convSupport_ ; i++ ) {
1127 Double nu = Double(i) / Double(convSupport_*convSampling_) ;
1128 Double val ;
1129 grdsf( &nu, &val ) ;
1130 convFunc(i) = ( 1.0 - nu * nu ) * val ;
1131 }
1132}
1133
1134void STGrid::gaussFunc( Vector<Float> &convFunc )
1135{
1136 convFunc = 0.0 ;
1137 // HWHM of the Gaussian is convSupport_ / 4
1138 // To take into account Gaussian tail, kernel cutoff is set to 4 * HWHM
1139 Int len = convSampling_ * convSupport_ ;
1140 Double hwhm = len * 0.25 ;
1141 for ( Int i = 0 ; i < len ; i++ ) {
1142 Double val = Double(i) / hwhm ;
1143 convFunc(i) = exp( -log(2)*val*val ) ;
1144 }
1145}
1146
1147void STGrid::pbFunc( Vector<Float> &convFunc )
1148{
1149 convFunc = 0.0 ;
1150}
1151
1152void STGrid::setConvFunc( Vector<Float> &convFunc )
1153{
1154 convSupport_ = userSupport_ ;
1155 if ( convType_ == "BOX" ) {
1156 if ( convSupport_ < 0 )
1157 convSupport_ = 0 ;
1158 Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ;
1159 convFunc.resize( convSize ) ;
1160 boxFunc( convFunc, convSize ) ;
1161 }
1162 else if ( convType_ == "SF" ) {
1163 if ( convSupport_ < 0 )
1164 convSupport_ = 3 ;
1165 Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ;
1166 convFunc.resize( convSize ) ;
1167 spheroidalFunc( convFunc ) ;
1168 }
1169 else if ( convType_ == "GAUSS" ) {
1170 // to take into account Gaussian tail
1171 if ( convSupport_ < 0 )
1172 convSupport_ = 12 ; // 3 * 4
1173 else {
1174 convSupport_ = userSupport_ * 4 ;
1175 }
1176 Int convSize = convSampling_ * ( 2 * convSupport_ + 2 ) ;
1177 convFunc.resize( convSize ) ;
1178 gaussFunc( convFunc ) ;
1179 }
1180 else if ( convType_ == "PB" ) {
1181 if ( convSupport_ < 0 )
1182 convSupport_ = 0 ;
1183 pbFunc( convFunc ) ;
1184 }
1185 else {
1186 throw AipsError( "Unsupported convolution function" ) ;
1187 }
1188}
1189
1190string STGrid::saveData( string outfile )
1191{
1192 LogIO os( LogOrigin("STGrid", "saveData", WHERE) ) ;
1193 double t0, t1 ;
1194 t0 = mathutil::gettimeofday_sec() ;
1195
1196 //Int polno = 0 ;
1197 String outfile_ ;
1198 if ( outfile.size() == 0 ) {
1199 if ( infile_.lastchar() == '/' ) {
1200 outfile_ = infile_.substr( 0, infile_.size()-1 ) ;
1201 }
1202 else {
1203 outfile_ = infile_ ;
1204 }
1205 outfile_ += ".grid" ;
1206 }
1207 else {
1208 outfile_ = outfile ;
1209 }
1210 Table tab ;
1211 prepareTable( tab, outfile_ ) ;
1212 IPosition dshape = data_.shape() ;
1213 Int nrow = nx_ * ny_ * npol_ ;
1214 tab.rwKeywordSet().define( "nPol", npol_ ) ;
1215 tab.addRow( nrow ) ;
1216 Vector<Double> cpix( 2 ) ;
1217 cpix(0) = Double( nx_ - 1 ) * 0.5 ;
1218 cpix(1) = Double( ny_ - 1 ) * 0.5 ;
1219 Vector<Double> dir( 2 ) ;
1220 ArrayColumn<Double> directionCol( tab, "DIRECTION" ) ;
1221 ArrayColumn<Float> spectraCol( tab, "SPECTRA" ) ;
1222 ScalarColumn<uInt> polnoCol( tab, "POLNO" ) ;
1223 Int irow = 0 ;
1224 Vector<Float> sp( nchan_ ) ;
1225 Bool bsp, bdata ;
1226 const Float *data_p = data_.getStorage( bdata ) ;
1227 Float *wsp_p, *sp_p ;
1228 const Float *wdata_p = data_p ;
1229 long step = nx_ * ny_ * npol_ ;
1230 long offset ;
1231 for ( Int iy = 0 ; iy < ny_ ; iy++ ) {
1232 dir(1) = center_(1) - ( cpix(1) - (Double)iy ) * celly_ ;
1233 for ( Int ix = 0 ; ix < nx_ ; ix++ ) {
1234 dir(0) = center_(0) - ( cpix(0) - (Double)ix ) * cellx_ ;
1235 for ( Int ipol = 0 ; ipol < npol_ ; ipol++ ) {
1236 offset = ix + iy * nx_ + ipol * nx_ * ny_ ;
1237 //os << "offset = " << offset << LogIO::POST ;
1238 sp_p = sp.getStorage( bsp ) ;
1239 wsp_p = sp_p ;
1240 wdata_p = data_p + offset ;
1241 for ( Int ichan = 0 ; ichan < nchan_ ; ichan++ ) {
1242 *wsp_p = *wdata_p ;
1243 wsp_p++ ;
1244 wdata_p += step ;
1245 }
1246 sp.putStorage( sp_p, bsp ) ;
1247 spectraCol.put( irow, sp ) ;
1248 directionCol.put( irow, dir ) ;
1249 polnoCol.put( irow, pollist_[ipol] ) ;
1250 irow++ ;
1251 }
1252 }
1253 }
1254 data_.freeStorage( data_p, bdata ) ;
1255
1256 t1 = mathutil::gettimeofday_sec() ;
1257 os << "saveData: elapsed time is " << t1-t0 << " sec." << LogIO::POST ;
1258
1259 return outfile_ ;
1260}
1261
1262void STGrid::prepareTable( Table &tab, String &name )
1263{
1264 Table t( infile_, Table::Old ) ;
1265 t.deepCopy( name, Table::New, False, t.endianFormat(), True ) ;
1266 tab = Table( name, Table::Update ) ;
1267}
1268
1269void STGrid::sortData()
1270{
1271 LogIO os( LogOrigin("STGRid","sortData",WHERE) ) ;
1272 double t0, t1 ;
1273 t0 = mathutil::gettimeofday_sec() ;
1274 rows_.resize( npol_*nrow_ ) ;
1275 Table tab = tab_( tab_.col("POLNO").in(pollist_) ) ;
1276 Block<String> cols( 2 ) ;
1277 cols[0] = "TIME" ;
1278 cols[1] = "BEAMNO" ;
1279 TableIterator iter( tab, cols ) ;
1280 uInt idx = 0 ;
1281 while( !iter.pastEnd() ) {
1282 Table t = iter.table().sort( "POLNO" ) ;
1283 Vector<uInt> rows = t.rowNumbers() ;
1284 //os << "rows=" << rows << LogIO::POST ;
1285 for ( uInt i = 0 ; i < rows.nelements() ; i++ ) {
1286 rows_[idx] = rows[i] ;
1287 idx++ ;
1288 }
1289 iter.next() ;
1290 }
1291 t1 = mathutil::gettimeofday_sec() ;
1292 os << "sortData: elapsed time is " << t1-t0 << " sec" << LogIO::POST ;
1293 //os << "rows_ = " << rows_ << LogIO::POST ;
1294}
1295}
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