[805] | 1 | // |
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| 2 | // C++ Implementation: STFiller |
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| 3 | // |
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| 4 | // Description: |
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| 5 | // |
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| 6 | // |
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| 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006 |
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| 8 | // |
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| 9 | // Copyright: See COPYING file that comes with this distribution |
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| 10 | // |
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| 11 | // |
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[404] | 12 | #include <casa/iostream.h> |
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| 13 | #include <casa/iomanip.h> |
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| 14 | |
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[125] | 15 | #include <casa/Exceptions.h> |
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[284] | 16 | #include <casa/OS/Path.h> |
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[290] | 17 | #include <casa/OS/File.h> |
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[338] | 18 | #include <casa/Quanta/Unit.h> |
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[805] | 19 | #include <casa/Arrays/ArrayMath.h> |
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| 20 | #include <casa/Utilities/Regex.h> |
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| 21 | |
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| 22 | #include <casa/Containers/RecordField.h> |
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| 23 | |
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| 24 | #include <tables/Tables/TableRow.h> |
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| 25 | |
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[2] | 26 | #include <atnf/PKSIO/PKSreader.h> |
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[125] | 27 | |
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[835] | 28 | #include "STDefs.h" |
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[477] | 29 | #include "SDAttr.h" |
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[2] | 30 | |
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[805] | 31 | #include "STFiller.h" |
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| 32 | |
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[125] | 33 | using namespace casa; |
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[2] | 34 | |
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[805] | 35 | namespace asap { |
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| 36 | |
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| 37 | STFiller::STFiller() : |
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[2] | 38 | reader_(0), |
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[405] | 39 | header_(0), |
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[805] | 40 | table_(0) |
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[420] | 41 | { |
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[2] | 42 | } |
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[805] | 43 | |
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| 44 | STFiller::STFiller( CountedPtr< Scantable > stbl ) : |
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[46] | 45 | reader_(0), |
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[405] | 46 | header_(0), |
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[805] | 47 | table_(stbl) |
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[420] | 48 | { |
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[46] | 49 | } |
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[2] | 50 | |
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[855] | 51 | STFiller::STFiller(const std::string& filename, int whichIF, int whichBeam ) : |
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[2] | 52 | reader_(0), |
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[405] | 53 | header_(0), |
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[805] | 54 | table_(0) |
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[420] | 55 | { |
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[805] | 56 | open(filename, whichIF, whichBeam); |
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[2] | 57 | } |
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| 58 | |
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[805] | 59 | STFiller::~STFiller() |
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| 60 | { |
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| 61 | close(); |
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[2] | 62 | } |
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| 63 | |
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[855] | 64 | void STFiller::open( const std::string& filename, int whichIF, int whichBeam ) |
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[805] | 65 | { |
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[846] | 66 | if (table_.null()) { |
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| 67 | table_ = new Scantable(); |
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| 68 | } |
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[805] | 69 | if (reader_) { delete reader_; reader_ = 0; } |
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| 70 | Bool haveBase, haveSpectra; |
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[2] | 71 | |
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| 72 | String inName(filename); |
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[284] | 73 | Path path(inName); |
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| 74 | inName = path.expandedName(); |
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[405] | 75 | |
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[290] | 76 | File file(inName); |
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[805] | 77 | if ( !file.exists() ) { |
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[290] | 78 | throw(AipsError("File does not exist")); |
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| 79 | } |
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[87] | 80 | filename_ = inName; |
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[332] | 81 | |
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[405] | 82 | // Create reader and fill in values for arguments |
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[2] | 83 | String format; |
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| 84 | Vector<Bool> beams; |
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[805] | 85 | if ( (reader_ = getPKSreader(inName, 0, 0, format, beams, nIF_, |
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[2] | 86 | nChan_, nPol_, haveBase, haveSpectra, |
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[805] | 87 | haveXPol_)) == 0 ) { |
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[405] | 88 | throw(AipsError("Creation of PKSreader failed")); |
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[2] | 89 | } |
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| 90 | if (!haveSpectra) { |
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| 91 | delete reader_; |
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| 92 | reader_ = 0; |
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[87] | 93 | throw(AipsError("No spectral data in file.")); |
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[2] | 94 | return; |
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| 95 | } |
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[405] | 96 | |
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[2] | 97 | nBeam_ = beams.nelements(); |
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| 98 | // Get basic parameters. |
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[805] | 99 | if ( haveXPol_ ) { |
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[717] | 100 | pushLog("Cross polarization present"); |
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[420] | 101 | nPol_ += 2; // Convert Complex -> 2 Floats |
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[110] | 102 | } |
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[420] | 103 | |
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[405] | 104 | if (header_) delete header_; |
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| 105 | header_ = new SDHeader(); |
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| 106 | header_->nchan = nChan_; |
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| 107 | header_->npol = nPol_; |
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| 108 | header_->nbeam = nBeam_; |
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| 109 | |
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| 110 | Int status = reader_->getHeader(header_->observer, header_->project, |
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| 111 | header_->antennaname, header_->antennaposition, |
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| 112 | header_->obstype,header_->equinox, |
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| 113 | header_->freqref, |
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| 114 | header_->utc, header_->reffreq, |
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| 115 | header_->bandwidth); |
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| 116 | |
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[2] | 117 | if (status) { |
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| 118 | delete reader_; |
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| 119 | reader_ = 0; |
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[805] | 120 | delete header_; |
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| 121 | header_ = 0; |
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[87] | 122 | throw(AipsError("Failed to get header.")); |
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[2] | 123 | } |
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[405] | 124 | if ((header_->obstype).matches("*SW*")) { |
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[2] | 125 | // need robust way here - probably read ahead of next timestamp |
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[717] | 126 | pushLog("Header indicates frequency switched observation.\n" |
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[754] | 127 | "setting # of IFs = 1 "); |
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[2] | 128 | nIF_ = 1; |
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[805] | 129 | header_->obstype = String("fswitch"); |
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[2] | 130 | } |
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[337] | 131 | |
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[405] | 132 | // Determine Telescope and set brightness unit |
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[342] | 133 | |
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| 134 | Bool throwIt = False; |
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[477] | 135 | Instrument inst = SDAttr::convertInstrument(header_->antennaname, throwIt); |
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[405] | 136 | header_->fluxunit = "Jy"; |
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[342] | 137 | if (inst==ATMOPRA || inst==TIDBINBILLA) { |
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[405] | 138 | header_->fluxunit = "K"; |
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[342] | 139 | } |
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[332] | 140 | |
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[405] | 141 | header_->nif = nIF_; |
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| 142 | header_->epoch = "UTC"; |
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[805] | 143 | // *** header_->frequnit = "Hz" |
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[2] | 144 | // Apply selection criteria. |
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[332] | 145 | |
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[2] | 146 | Vector<Int> ref; |
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| 147 | Vector<Bool> beamSel(nBeam_,True); |
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| 148 | Vector<Bool> IFsel(nIF_,True); |
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[405] | 149 | |
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[332] | 150 | ifOffset_ = 0; |
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| 151 | if (whichIF>=0) { |
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| 152 | if (whichIF>=0 && whichIF<nIF_) { |
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[805] | 153 | IFsel = False; |
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| 154 | IFsel(whichIF) = True; |
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| 155 | header_->nif = 1; |
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| 156 | nIF_ = 1; |
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| 157 | ifOffset_ = whichIF; |
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[332] | 158 | } else { |
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[805] | 159 | delete reader_; |
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| 160 | reader_ = 0; |
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| 161 | delete header_; |
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| 162 | header_ = 0; |
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| 163 | throw(AipsError("Illegal IF selection")); |
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[332] | 164 | } |
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| 165 | } |
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[405] | 166 | |
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[332] | 167 | beamOffset_ = 0; |
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| 168 | if (whichBeam>=0) { |
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[805] | 169 | if (whichBeam>=0 && whichBeam<nBeam_) { |
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| 170 | beamSel = False; |
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| 171 | beamSel(whichBeam) = True; |
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| 172 | header_->nbeam = 1; |
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| 173 | nBeam_ = 1; |
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| 174 | beamOffset_ = whichBeam; |
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| 175 | } else { |
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| 176 | delete reader_; |
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| 177 | reader_ = 0; |
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| 178 | delete header_; |
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| 179 | header_ = 0; |
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| 180 | throw(AipsError("Illegal Beam selection")); |
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| 181 | } |
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[332] | 182 | } |
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| 183 | Vector<Int> start(nIF_, 1); |
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| 184 | Vector<Int> end(nIF_, 0); |
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[420] | 185 | reader_->select(beamSel, IFsel, start, end, ref, True, haveXPol_); |
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[846] | 186 | table_->setHeader(*header_); |
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[805] | 187 | } |
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[405] | 188 | |
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[805] | 189 | void STFiller::close( ) |
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| 190 | { |
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| 191 | delete reader_;reader_=0; |
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| 192 | delete header_;header_=0; |
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| 193 | table_ = 0; |
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[2] | 194 | } |
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| 195 | |
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[805] | 196 | int asap::STFiller::read( ) |
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| 197 | { |
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[87] | 198 | int status = 0; |
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| 199 | |
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[17] | 200 | Int beamNo, IFno, refBeam, scanNo, cycleNo; |
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[87] | 201 | Float azimuth, elevation, focusAxi, focusRot, focusTan, |
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[2] | 202 | humidity, parAngle, pressure, temperature, windAz, windSpeed; |
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[73] | 203 | Double bandwidth, freqInc, interval, mjd, refFreq, restFreq, srcVel; |
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[2] | 204 | String fieldName, srcName, tcalTime; |
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| 205 | Vector<Float> calFctr, sigma, tcal, tsys; |
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| 206 | Matrix<Float> baseLin, baseSub; |
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| 207 | Vector<Double> direction(2), scanRate(2), srcDir(2), srcPM(2); |
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| 208 | Matrix<Float> spectra; |
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| 209 | Matrix<uChar> flagtra; |
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| 210 | Complex xCalFctr; |
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| 211 | Vector<Complex> xPol; |
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[805] | 212 | while ( status == 0 ) { |
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| 213 | status = reader_->read(scanNo, cycleNo, mjd, interval, fieldName, |
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| 214 | srcName, srcDir, srcPM, srcVel, IFno, refFreq, |
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| 215 | bandwidth, freqInc, restFreq, tcal, tcalTime, |
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| 216 | azimuth, elevation, parAngle, focusAxi, |
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| 217 | focusTan, focusRot, temperature, pressure, |
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| 218 | humidity, windSpeed, windAz, refBeam, |
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| 219 | beamNo, direction, scanRate, |
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| 220 | tsys, sigma, calFctr, baseLin, baseSub, |
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| 221 | spectra, flagtra, xCalFctr, xPol); |
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| 222 | if ( status != 0 ) break; |
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| 223 | TableRow row(table_->table()); |
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| 224 | TableRecord& rec = row.record(); |
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| 225 | RecordFieldPtr<uInt> scanoCol(rec, "SCANNO"); |
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| 226 | *scanoCol = scanNo-1; |
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| 227 | RecordFieldPtr<uInt> cyclenoCol(rec, "CYCLENO"); |
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| 228 | *cyclenoCol = cycleNo-1; |
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| 229 | RecordFieldPtr<Double> mjdCol(rec, "TIME"); |
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| 230 | *mjdCol = mjd; |
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| 231 | RecordFieldPtr<Double> intCol(rec, "INTERVAL"); |
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| 232 | *intCol = interval; |
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| 233 | RecordFieldPtr<String> srcnCol(rec, "SRCNAME"); |
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| 234 | RecordFieldPtr<Int> srctCol(rec, "SRCTYPE"); |
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| 235 | // try to auto-identify if it is on or off. |
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| 236 | Regex rx(".*_[e|w|R]$"); |
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| 237 | Regex rx2("_[e|w|R|S]$"); |
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| 238 | Int match = srcName.matches(rx); |
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| 239 | if (match) { |
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| 240 | *srcnCol = srcName; |
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| 241 | } else { |
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| 242 | *srcnCol = srcName.before(rx2); |
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| 243 | } |
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| 244 | //*srcnCol = srcName;//.before(rx2); |
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| 245 | *srctCol = match; |
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| 246 | RecordFieldPtr<uInt> beamCol(rec, "BEAMNO"); |
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| 247 | *beamCol = beamNo-beamOffset_-1; |
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| 248 | RecordFieldPtr<Int> rbCol(rec, "REFBEAMNO"); |
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| 249 | Int rb = -1; |
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| 250 | if (nBeam_ > 1 ) rb = refBeam-1; |
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| 251 | *rbCol = rb; |
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| 252 | RecordFieldPtr<uInt> ifCol(rec, "IFNO"); |
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| 253 | *ifCol = IFno-ifOffset_- 1; |
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| 254 | uInt id; |
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| 255 | /// @todo this has to change when nchan isn't global anymore |
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| 256 | id = table_->frequencies().addEntry(Double(header_->nchan/2), |
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| 257 | refFreq, freqInc); |
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| 258 | RecordFieldPtr<uInt> mfreqidCol(rec, "FREQ_ID"); |
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| 259 | *mfreqidCol = id; |
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[25] | 260 | |
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[805] | 261 | id = table_->molecules().addEntry(restFreq); |
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| 262 | RecordFieldPtr<uInt> molidCol(rec, "MOLECULE_ID"); |
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| 263 | *molidCol = id; |
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[414] | 264 | |
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[805] | 265 | id = table_->tcal().addEntry(tcalTime, tcal); |
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| 266 | RecordFieldPtr<uInt> mcalidCol(rec, "TCAL_ID"); |
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| 267 | *mcalidCol = id; |
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| 268 | id = table_->weather().addEntry(temperature, pressure, humidity, |
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| 269 | windSpeed, windAz); |
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| 270 | RecordFieldPtr<uInt> mweatheridCol(rec, "WEATHER_ID"); |
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| 271 | *mweatheridCol = id; |
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| 272 | RecordFieldPtr<uInt> mfocusidCol(rec, "FOCUS_ID"); |
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| 273 | id = table_->focus().addEntry(focusAxi, focusTan, focusRot); |
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| 274 | *mfocusidCol = id; |
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| 275 | RecordFieldPtr<Array<Double> > dirCol(rec, "DIRECTION"); |
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| 276 | *dirCol = direction; |
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| 277 | RecordFieldPtr<Double> azCol(rec, "AZIMUTH"); |
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| 278 | *azCol = azimuth; |
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| 279 | RecordFieldPtr<Double> elCol(rec, "ELEVATION"); |
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| 280 | *elCol = elevation; |
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[405] | 281 | |
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[805] | 282 | RecordFieldPtr<Float> parCol(rec, "PARANGLE"); |
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| 283 | *parCol = parAngle; |
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[332] | 284 | |
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[805] | 285 | RecordFieldPtr< Array<Float> > specCol(rec, "SPECTRA"); |
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| 286 | RecordFieldPtr< Array<uChar> > flagCol(rec, "FLAGTRA"); |
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| 287 | RecordFieldPtr< uInt > polnoCol(rec, "POLNO"); |
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[405] | 288 | |
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[805] | 289 | RecordFieldPtr< Array<Float> > tsysCol(rec, "TSYS"); |
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| 290 | // Turn the (nchan,npol) matrix and possible complex xPol vector |
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| 291 | // into 2-4 rows in the scantable |
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| 292 | Vector<Float> tsysvec(1); |
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| 293 | // Why is spectra.ncolumn() == 3 for haveXPol_ == True |
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| 294 | uInt npol = (spectra.ncolumn()==1 ? 1: 2); |
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| 295 | for ( uInt i=0; i< npol; ++i ) { |
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| 296 | tsysvec = tsys(i); |
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| 297 | *tsysCol = tsysvec; |
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| 298 | *polnoCol = i; |
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[405] | 299 | |
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[805] | 300 | *specCol = spectra.column(i); |
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| 301 | *flagCol = flagtra.column(i); |
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| 302 | table_->table().addRow(); |
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| 303 | row.put(table_->table().nrow()-1, rec); |
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[2] | 304 | } |
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[805] | 305 | if ( haveXPol_ ) { |
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| 306 | // no tsys given for xpol, so emulate it |
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| 307 | tsysvec = sqrt(tsys[0]*tsys[1]); |
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| 308 | *tsysCol = tsysvec; |
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| 309 | // add real part of cross pol |
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| 310 | *polnoCol = 2; |
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| 311 | Vector<Float> r(real(xPol)); |
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| 312 | *specCol = r; |
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| 313 | // make up flags from linears |
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| 314 | /// @fixme this has to be a bitwise or of both pols |
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| 315 | *flagCol = flagtra.column(0);// | flagtra.column(1); |
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| 316 | table_->table().addRow(); |
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| 317 | row.put(table_->table().nrow()-1, rec); |
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| 318 | // ad imaginary part of cross pol |
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| 319 | *polnoCol = 3; |
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| 320 | Vector<Float> im(imag(xPol)); |
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| 321 | *specCol = im; |
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| 322 | table_->table().addRow(); |
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| 323 | row.put(table_->table().nrow()-1, rec); |
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[2] | 324 | } |
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[805] | 325 | } |
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| 326 | if (status > 0) { |
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| 327 | close(); |
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| 328 | throw(AipsError("Reading error occured, data possibly corrupted.")); |
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| 329 | } |
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[404] | 330 | |
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[2] | 331 | return status; |
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| 332 | } |
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[805] | 333 | |
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| 334 | }//namespace asap |
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