[805] | 1 | // |
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| 2 | // C++ Implementation: STFiller |
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| 3 | // |
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| 4 | // Description: |
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| 5 | // |
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| 6 | // |
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[1410] | 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006-2007 |
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[805] | 8 | // |
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| 9 | // Copyright: See COPYING file that comes with this distribution |
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| 10 | // |
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| 11 | // |
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[404] | 12 | #include <casa/iostream.h> |
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| 13 | #include <casa/iomanip.h> |
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| 14 | |
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[125] | 15 | #include <casa/Exceptions.h> |
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[284] | 16 | #include <casa/OS/Path.h> |
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[290] | 17 | #include <casa/OS/File.h> |
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[338] | 18 | #include <casa/Quanta/Unit.h> |
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[805] | 19 | #include <casa/Arrays/ArrayMath.h> |
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[1060] | 20 | #include <casa/Arrays/ArrayLogical.h> |
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[805] | 21 | #include <casa/Utilities/Regex.h> |
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| 22 | |
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| 23 | #include <casa/Containers/RecordField.h> |
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| 24 | |
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| 25 | #include <tables/Tables/TableRow.h> |
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| 26 | |
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[2] | 27 | #include <atnf/PKSIO/PKSreader.h> |
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[1391] | 28 | //#include <casa/System/ProgressMeter.h> |
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[125] | 29 | |
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[1391] | 30 | |
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[835] | 31 | #include "STDefs.h" |
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[878] | 32 | #include "STAttr.h" |
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[2] | 33 | |
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[805] | 34 | #include "STFiller.h" |
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[901] | 35 | #include "STHeader.h" |
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[805] | 36 | |
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[125] | 37 | using namespace casa; |
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[2] | 38 | |
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[805] | 39 | namespace asap { |
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| 40 | |
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| 41 | STFiller::STFiller() : |
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[2] | 42 | reader_(0), |
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[405] | 43 | header_(0), |
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[805] | 44 | table_(0) |
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[420] | 45 | { |
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[2] | 46 | } |
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[805] | 47 | |
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| 48 | STFiller::STFiller( CountedPtr< Scantable > stbl ) : |
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[46] | 49 | reader_(0), |
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[405] | 50 | header_(0), |
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[805] | 51 | table_(stbl) |
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[420] | 52 | { |
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[46] | 53 | } |
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[2] | 54 | |
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[855] | 55 | STFiller::STFiller(const std::string& filename, int whichIF, int whichBeam ) : |
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[2] | 56 | reader_(0), |
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[405] | 57 | header_(0), |
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[805] | 58 | table_(0) |
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[420] | 59 | { |
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[805] | 60 | open(filename, whichIF, whichBeam); |
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[2] | 61 | } |
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| 62 | |
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[805] | 63 | STFiller::~STFiller() |
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| 64 | { |
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| 65 | close(); |
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[2] | 66 | } |
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| 67 | |
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[855] | 68 | void STFiller::open( const std::string& filename, int whichIF, int whichBeam ) |
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[805] | 69 | { |
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[846] | 70 | if (table_.null()) { |
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| 71 | table_ = new Scantable(); |
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| 72 | } |
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[805] | 73 | if (reader_) { delete reader_; reader_ = 0; } |
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| 74 | Bool haveBase, haveSpectra; |
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[2] | 75 | |
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| 76 | String inName(filename); |
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[284] | 77 | Path path(inName); |
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| 78 | inName = path.expandedName(); |
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[405] | 79 | |
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[290] | 80 | File file(inName); |
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[805] | 81 | if ( !file.exists() ) { |
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[290] | 82 | throw(AipsError("File does not exist")); |
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| 83 | } |
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[87] | 84 | filename_ = inName; |
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[332] | 85 | |
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[405] | 86 | // Create reader and fill in values for arguments |
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[2] | 87 | String format; |
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[1060] | 88 | Vector<Bool> beams, ifs; |
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| 89 | Vector<uInt> nchans,npols; |
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| 90 | if ( (reader_ = getPKSreader(inName, 0, 0, format, beams, ifs, |
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| 91 | nchans, npols, haveXPol_,haveBase, haveSpectra |
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| 92 | )) == 0 ) { |
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[405] | 93 | throw(AipsError("Creation of PKSreader failed")); |
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[2] | 94 | } |
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| 95 | if (!haveSpectra) { |
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| 96 | delete reader_; |
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| 97 | reader_ = 0; |
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[87] | 98 | throw(AipsError("No spectral data in file.")); |
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[2] | 99 | return; |
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| 100 | } |
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| 101 | nBeam_ = beams.nelements(); |
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[1060] | 102 | nIF_ = ifs.nelements(); |
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[2] | 103 | // Get basic parameters. |
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[1060] | 104 | if ( anyEQ(haveXPol_, True) ) { |
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[717] | 105 | pushLog("Cross polarization present"); |
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[1060] | 106 | for (uInt i=0; i< npols.nelements();++i) { |
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| 107 | if (npols[i] < 3) npols[i] += 2;// Convert Complex -> 2 Floats |
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| 108 | } |
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[110] | 109 | } |
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[405] | 110 | if (header_) delete header_; |
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[901] | 111 | header_ = new STHeader(); |
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[1060] | 112 | header_->nchan = max(nchans); |
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| 113 | header_->npol = max(npols); |
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[405] | 114 | header_->nbeam = nBeam_; |
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[1410] | 115 | |
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[405] | 116 | Int status = reader_->getHeader(header_->observer, header_->project, |
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| 117 | header_->antennaname, header_->antennaposition, |
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[1410] | 118 | header_->obstype, |
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| 119 | header_->fluxunit, |
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| 120 | header_->equinox, |
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[405] | 121 | header_->freqref, |
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| 122 | header_->utc, header_->reffreq, |
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| 123 | header_->bandwidth); |
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| 124 | |
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[2] | 125 | if (status) { |
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| 126 | delete reader_; |
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| 127 | reader_ = 0; |
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[805] | 128 | delete header_; |
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| 129 | header_ = 0; |
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[87] | 130 | throw(AipsError("Failed to get header.")); |
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[2] | 131 | } |
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[405] | 132 | if ((header_->obstype).matches("*SW*")) { |
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[2] | 133 | // need robust way here - probably read ahead of next timestamp |
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[717] | 134 | pushLog("Header indicates frequency switched observation.\n" |
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[754] | 135 | "setting # of IFs = 1 "); |
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[2] | 136 | nIF_ = 1; |
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[805] | 137 | header_->obstype = String("fswitch"); |
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[2] | 138 | } |
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[405] | 139 | // Determine Telescope and set brightness unit |
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[342] | 140 | |
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[1391] | 141 | |
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[342] | 142 | Bool throwIt = False; |
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[878] | 143 | Instrument inst = STAttr::convertInstrument(header_->antennaname, throwIt); |
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[1410] | 144 | |
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[342] | 145 | if (inst==ATMOPRA || inst==TIDBINBILLA) { |
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[1410] | 146 | header_->fluxunit = "K"; |
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| 147 | } else { |
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| 148 | // downcase for use with Quanta |
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| 149 | if (header_->fluxunit == "JY") { |
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| 150 | header_->fluxunit = "Jy"; |
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| 151 | } |
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[342] | 152 | } |
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[1188] | 153 | STAttr stattr; |
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| 154 | header_->poltype = stattr.feedPolType(inst); |
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[405] | 155 | header_->nif = nIF_; |
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| 156 | header_->epoch = "UTC"; |
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[805] | 157 | // *** header_->frequnit = "Hz" |
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[2] | 158 | // Apply selection criteria. |
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| 159 | Vector<Int> ref; |
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[332] | 160 | ifOffset_ = 0; |
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| 161 | if (whichIF>=0) { |
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| 162 | if (whichIF>=0 && whichIF<nIF_) { |
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[1060] | 163 | ifs = False; |
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| 164 | ifs(whichIF) = True; |
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[805] | 165 | header_->nif = 1; |
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| 166 | nIF_ = 1; |
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| 167 | ifOffset_ = whichIF; |
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[332] | 168 | } else { |
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[805] | 169 | delete reader_; |
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| 170 | reader_ = 0; |
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| 171 | delete header_; |
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| 172 | header_ = 0; |
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| 173 | throw(AipsError("Illegal IF selection")); |
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[332] | 174 | } |
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| 175 | } |
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| 176 | beamOffset_ = 0; |
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| 177 | if (whichBeam>=0) { |
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[805] | 178 | if (whichBeam>=0 && whichBeam<nBeam_) { |
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[1060] | 179 | beams = False; |
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| 180 | beams(whichBeam) = True; |
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[805] | 181 | header_->nbeam = 1; |
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| 182 | nBeam_ = 1; |
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| 183 | beamOffset_ = whichBeam; |
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| 184 | } else { |
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| 185 | delete reader_; |
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| 186 | reader_ = 0; |
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| 187 | delete header_; |
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| 188 | header_ = 0; |
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| 189 | throw(AipsError("Illegal Beam selection")); |
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| 190 | } |
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[332] | 191 | } |
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| 192 | Vector<Int> start(nIF_, 1); |
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| 193 | Vector<Int> end(nIF_, 0); |
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[1060] | 194 | reader_->select(beams, ifs, start, end, ref, True, haveXPol_[0], False); |
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[846] | 195 | table_->setHeader(*header_); |
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[1391] | 196 | //For MS, add the location of POINTING of the input MS so one get |
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| 197 | //pointing data from there, if necessary. |
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| 198 | //Also find nrow in MS |
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| 199 | nInDataRow = 0; |
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| 200 | if (format == "MS2") { |
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| 201 | Path datapath(inName); |
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| 202 | String ptTabPath = datapath.absoluteName(); |
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| 203 | Table inMS(ptTabPath); |
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| 204 | nInDataRow = inMS.nrow(); |
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| 205 | ptTabPath.append("/POINTING"); |
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| 206 | table_->table().rwKeywordSet().define("POINTING", ptTabPath); |
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| 207 | if ((header_->antennaname).matches("GBT")) { |
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| 208 | String GOTabPath = datapath.absoluteName(); |
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| 209 | GOTabPath.append("/GBT_GO"); |
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| 210 | table_->table().rwKeywordSet().define("GBT_GO", GOTabPath); |
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| 211 | } |
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| 212 | } |
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| 213 | |
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[805] | 214 | } |
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[405] | 215 | |
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[805] | 216 | void STFiller::close( ) |
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| 217 | { |
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| 218 | delete reader_;reader_=0; |
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| 219 | delete header_;header_=0; |
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| 220 | table_ = 0; |
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[2] | 221 | } |
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| 222 | |
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[805] | 223 | int asap::STFiller::read( ) |
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| 224 | { |
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[87] | 225 | int status = 0; |
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| 226 | |
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[17] | 227 | Int beamNo, IFno, refBeam, scanNo, cycleNo; |
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[87] | 228 | Float azimuth, elevation, focusAxi, focusRot, focusTan, |
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[2] | 229 | humidity, parAngle, pressure, temperature, windAz, windSpeed; |
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[73] | 230 | Double bandwidth, freqInc, interval, mjd, refFreq, restFreq, srcVel; |
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[1072] | 231 | String fieldName, srcName, tcalTime, obsType; |
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[2] | 232 | Vector<Float> calFctr, sigma, tcal, tsys; |
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| 233 | Matrix<Float> baseLin, baseSub; |
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| 234 | Vector<Double> direction(2), scanRate(2), srcDir(2), srcPM(2); |
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| 235 | Matrix<Float> spectra; |
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| 236 | Matrix<uChar> flagtra; |
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| 237 | Complex xCalFctr; |
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| 238 | Vector<Complex> xPol; |
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[1391] | 239 | Double min = 0.0; |
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| 240 | Double max = nInDataRow; |
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| 241 | //ProgressMeter fillpm(min, max, "Data importing progress"); |
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| 242 | int n = 0; |
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[805] | 243 | while ( status == 0 ) { |
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| 244 | status = reader_->read(scanNo, cycleNo, mjd, interval, fieldName, |
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[1072] | 245 | srcName, srcDir, srcPM, srcVel, obsType, IFno, |
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| 246 | refFreq, bandwidth, freqInc, restFreq, tcal, tcalTime, |
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[805] | 247 | azimuth, elevation, parAngle, focusAxi, |
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| 248 | focusTan, focusRot, temperature, pressure, |
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| 249 | humidity, windSpeed, windAz, refBeam, |
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| 250 | beamNo, direction, scanRate, |
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| 251 | tsys, sigma, calFctr, baseLin, baseSub, |
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| 252 | spectra, flagtra, xCalFctr, xPol); |
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| 253 | if ( status != 0 ) break; |
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[1391] | 254 | n += 1; |
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| 255 | |
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[1081] | 256 | Regex filterrx(".*[SL|PA]$"); |
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[1110] | 257 | Regex obsrx("^AT.+"); |
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| 258 | if ( header_->antennaname.matches(obsrx) && obsType.matches(filterrx)) { |
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| 259 | //cerr << "ignoring paddle scan" << endl; |
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[1081] | 260 | continue; |
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| 261 | } |
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[805] | 262 | TableRow row(table_->table()); |
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| 263 | TableRecord& rec = row.record(); |
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[999] | 264 | // fields that don't get used and are just passed through asap |
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| 265 | RecordFieldPtr<Array<Double> > srateCol(rec, "SCANRATE"); |
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| 266 | *srateCol = scanRate; |
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| 267 | RecordFieldPtr<Array<Double> > spmCol(rec, "SRCPROPERMOTION"); |
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| 268 | *spmCol = srcPM; |
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| 269 | RecordFieldPtr<Array<Double> > sdirCol(rec, "SRCDIRECTION"); |
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| 270 | *sdirCol = srcDir; |
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| 271 | RecordFieldPtr<Double> svelCol(rec, "SRCVELOCITY"); |
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| 272 | *svelCol = srcVel; |
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| 273 | // the real stuff |
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[972] | 274 | RecordFieldPtr<Int> fitCol(rec, "FIT_ID"); |
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| 275 | *fitCol = -1; |
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[805] | 276 | RecordFieldPtr<uInt> scanoCol(rec, "SCANNO"); |
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| 277 | *scanoCol = scanNo-1; |
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| 278 | RecordFieldPtr<uInt> cyclenoCol(rec, "CYCLENO"); |
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| 279 | *cyclenoCol = cycleNo-1; |
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| 280 | RecordFieldPtr<Double> mjdCol(rec, "TIME"); |
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| 281 | *mjdCol = mjd; |
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| 282 | RecordFieldPtr<Double> intCol(rec, "INTERVAL"); |
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| 283 | *intCol = interval; |
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| 284 | RecordFieldPtr<String> srcnCol(rec, "SRCNAME"); |
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| 285 | RecordFieldPtr<Int> srctCol(rec, "SRCTYPE"); |
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[1391] | 286 | RecordFieldPtr<String> fieldnCol(rec, "FIELDNAME"); |
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| 287 | *fieldnCol = fieldName; |
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[805] | 288 | // try to auto-identify if it is on or off. |
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[922] | 289 | Regex rx(".*[e|w|_R]$"); |
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[942] | 290 | Regex rx2("_S$"); |
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[805] | 291 | Int match = srcName.matches(rx); |
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| 292 | if (match) { |
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| 293 | *srcnCol = srcName; |
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| 294 | } else { |
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| 295 | *srcnCol = srcName.before(rx2); |
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| 296 | } |
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| 297 | //*srcnCol = srcName;//.before(rx2); |
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| 298 | *srctCol = match; |
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| 299 | RecordFieldPtr<uInt> beamCol(rec, "BEAMNO"); |
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| 300 | *beamCol = beamNo-beamOffset_-1; |
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| 301 | RecordFieldPtr<Int> rbCol(rec, "REFBEAMNO"); |
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| 302 | Int rb = -1; |
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| 303 | if (nBeam_ > 1 ) rb = refBeam-1; |
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| 304 | *rbCol = rb; |
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| 305 | RecordFieldPtr<uInt> ifCol(rec, "IFNO"); |
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| 306 | *ifCol = IFno-ifOffset_- 1; |
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| 307 | uInt id; |
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| 308 | /// @todo this has to change when nchan isn't global anymore |
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| 309 | id = table_->frequencies().addEntry(Double(header_->nchan/2), |
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| 310 | refFreq, freqInc); |
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| 311 | RecordFieldPtr<uInt> mfreqidCol(rec, "FREQ_ID"); |
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| 312 | *mfreqidCol = id; |
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[25] | 313 | |
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[805] | 314 | id = table_->molecules().addEntry(restFreq); |
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| 315 | RecordFieldPtr<uInt> molidCol(rec, "MOLECULE_ID"); |
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| 316 | *molidCol = id; |
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[414] | 317 | |
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[805] | 318 | id = table_->tcal().addEntry(tcalTime, tcal); |
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| 319 | RecordFieldPtr<uInt> mcalidCol(rec, "TCAL_ID"); |
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| 320 | *mcalidCol = id; |
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| 321 | id = table_->weather().addEntry(temperature, pressure, humidity, |
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| 322 | windSpeed, windAz); |
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| 323 | RecordFieldPtr<uInt> mweatheridCol(rec, "WEATHER_ID"); |
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| 324 | *mweatheridCol = id; |
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| 325 | RecordFieldPtr<uInt> mfocusidCol(rec, "FOCUS_ID"); |
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| 326 | id = table_->focus().addEntry(focusAxi, focusTan, focusRot); |
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| 327 | *mfocusidCol = id; |
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| 328 | RecordFieldPtr<Array<Double> > dirCol(rec, "DIRECTION"); |
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| 329 | *dirCol = direction; |
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[922] | 330 | RecordFieldPtr<Float> azCol(rec, "AZIMUTH"); |
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[805] | 331 | *azCol = azimuth; |
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[922] | 332 | RecordFieldPtr<Float> elCol(rec, "ELEVATION"); |
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[805] | 333 | *elCol = elevation; |
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[405] | 334 | |
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[805] | 335 | RecordFieldPtr<Float> parCol(rec, "PARANGLE"); |
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| 336 | *parCol = parAngle; |
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[332] | 337 | |
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[805] | 338 | RecordFieldPtr< Array<Float> > specCol(rec, "SPECTRA"); |
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| 339 | RecordFieldPtr< Array<uChar> > flagCol(rec, "FLAGTRA"); |
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| 340 | RecordFieldPtr< uInt > polnoCol(rec, "POLNO"); |
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[405] | 341 | |
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[805] | 342 | RecordFieldPtr< Array<Float> > tsysCol(rec, "TSYS"); |
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| 343 | // Turn the (nchan,npol) matrix and possible complex xPol vector |
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| 344 | // into 2-4 rows in the scantable |
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| 345 | Vector<Float> tsysvec(1); |
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| 346 | // Why is spectra.ncolumn() == 3 for haveXPol_ == True |
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| 347 | uInt npol = (spectra.ncolumn()==1 ? 1: 2); |
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| 348 | for ( uInt i=0; i< npol; ++i ) { |
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| 349 | tsysvec = tsys(i); |
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| 350 | *tsysCol = tsysvec; |
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| 351 | *polnoCol = i; |
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[405] | 352 | |
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[805] | 353 | *specCol = spectra.column(i); |
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| 354 | *flagCol = flagtra.column(i); |
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| 355 | table_->table().addRow(); |
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| 356 | row.put(table_->table().nrow()-1, rec); |
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[2] | 357 | } |
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[1060] | 358 | if ( haveXPol_[0] ) { |
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[805] | 359 | // no tsys given for xpol, so emulate it |
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| 360 | tsysvec = sqrt(tsys[0]*tsys[1]); |
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| 361 | *tsysCol = tsysvec; |
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| 362 | // add real part of cross pol |
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| 363 | *polnoCol = 2; |
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| 364 | Vector<Float> r(real(xPol)); |
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| 365 | *specCol = r; |
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| 366 | // make up flags from linears |
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| 367 | /// @fixme this has to be a bitwise or of both pols |
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| 368 | *flagCol = flagtra.column(0);// | flagtra.column(1); |
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| 369 | table_->table().addRow(); |
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| 370 | row.put(table_->table().nrow()-1, rec); |
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| 371 | // ad imaginary part of cross pol |
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| 372 | *polnoCol = 3; |
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| 373 | Vector<Float> im(imag(xPol)); |
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| 374 | *specCol = im; |
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| 375 | table_->table().addRow(); |
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| 376 | row.put(table_->table().nrow()-1, rec); |
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[2] | 377 | } |
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[1391] | 378 | //fillpm._update(n); |
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[805] | 379 | } |
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| 380 | if (status > 0) { |
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| 381 | close(); |
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| 382 | throw(AipsError("Reading error occured, data possibly corrupted.")); |
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| 383 | } |
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[1391] | 384 | //fillpm.done(); |
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[2] | 385 | return status; |
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| 386 | } |
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[805] | 387 | |
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| 388 | }//namespace asap |
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