1 | //
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2 | // C++ Implementation: STApplyCal
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3 | //
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4 | // Description:
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5 | //
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6 | //
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7 | // Author: Takeshi Nakazato <takeshi.nakazato@nao.ac.jp> (C) 2012
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8 | //
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9 | // Copyright: See COPYING file that comes with this distribution
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10 | //
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11 | //
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12 | #include <assert.h>
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13 |
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14 | #include <casa/Arrays/Array.h>
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15 | #include <casa/Arrays/Vector.h>
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16 | #include <casa/Arrays/Matrix.h>
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17 | #include <casa/Arrays/ArrayIO.h>
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18 | #include <casa/Arrays/ArrayMath.h>
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19 | #include <casa/BasicSL/String.h>
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20 | #include <casa/Logging/LogIO.h>
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21 | #include <casa/Exceptions/Error.h>
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22 | #include <casa/Utilities/CountedPtr.h>
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23 | #include <casa/Utilities/Sort.h>
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24 | #include <casa/Utilities/Assert.h>
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25 | #include <tables/Tables/Table.h>
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26 |
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27 | #include "Scantable.h"
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28 | #include "STApplyCal.h"
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29 | #include "STApplyTable.h"
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30 | #include "STCalTsysTable.h"
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31 | #include "STCalSkyTable.h"
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32 | #include "STCalEnum.h"
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33 | #include "STIdxIter.h"
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34 | #include "Calibrator.h"
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35 | #include "PSAlmaCalibrator.h"
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36 | #include "Interpolator1D.h"
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37 | #include "NearestInterpolator1D.h"
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38 | #include "BufferedLinearInterpolator1D.h"
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39 | #include "PolynomialInterpolator1D.h"
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40 | #include "CubicSplineInterpolator1D.h"
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41 | #include <atnf/PKSIO/SrcType.h>
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42 |
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43 |
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44 | using namespace casa;
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45 | using namespace std;
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46 |
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47 | namespace {
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48 | template<class Accessor, class Type>
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49 | class AccessorInterface
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50 | {
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51 | public:
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52 | typedef Type TableType;
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53 | static void GetSortedData(const vector<TableType *> &tablelist,
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54 | const Vector<uInt> &tableIndex,
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55 | const uInt nrow,
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56 | const uInt nchan,
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57 | Vector<Double> &time,
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58 | Matrix<Float> &data,
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59 | Matrix<uChar> &flag)
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60 | {
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61 | Vector<Double> timeUnsorted;
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62 | Matrix<Float> dataUnsorted;
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63 | Matrix<uChar> flagUnsorted;
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64 | GetFromTable(tablelist, tableIndex, nrow, nchan,
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65 | timeUnsorted, dataUnsorted, flagUnsorted);
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66 | SortData(timeUnsorted, dataUnsorted, flagUnsorted,
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67 | time, data, flag);
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68 | }
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69 | private:
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70 | static void GetFromTable(const vector<TableType *> &tableList,
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71 | const Vector<uInt> &tableIndex,
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72 | const uInt nrow,
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73 | const uInt nchan,
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74 | Vector<Double> &time,
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75 | Matrix<Float> &data,
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76 | Matrix<uChar> &flag)
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77 | {
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78 | time.resize(nrow, False);
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79 | const IPosition shape(2, nrow, nchan);
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80 | data.resize(shape, False);
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81 | flag.resize(shape, False);
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82 | uInt rowIndex = 0;
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83 | for (uInt i = 0 ; i < tableIndex.nelements(); i++) {
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84 | TableType *p = tableList[tableIndex[i]];
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85 | Vector<Double> t = Accessor::GetTime(p);
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86 | Matrix<Float> dt = Accessor::GetData(p);
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87 | Matrix<uChar> fl = Accessor::GetFlag(p);
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88 | for (uInt j = 0; j < t.nelements(); j++) {
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89 | time[rowIndex] = t[j];
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90 | data.row(rowIndex) = dt.column(j);
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91 | flag.row(rowIndex) = fl.column(j);
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92 | rowIndex++;
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93 | }
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94 | }
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95 | }
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96 |
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97 | static Vector<uInt> IndexSort(const Vector<Double> &t)
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98 | {
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99 | Sort sort;
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100 | sort.sortKey(&t[0], TpDouble, 0, Sort::Ascending);
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101 | Vector<uInt> idx;
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102 | sort.sort(idx, t.nelements(), Sort::QuickSort|Sort::NoDuplicates);
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103 | return idx;
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104 | }
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105 |
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106 | static void SortData(const Vector<Double> &key, const Matrix<Float> &data,
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107 | const Matrix<uChar> &flag,
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108 | Vector<Double> &sortedKey, Matrix<Float> &sortedData,
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109 | Matrix<uChar> &sortedFlag)
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110 | {
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111 | Vector<uInt> sortIndex = IndexSort(key);
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112 | uInt len = sortIndex.nelements();
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113 | IPosition shape = data.shape();
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114 | shape[0] = len;
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115 | Int64 nelements = shape.product();
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116 | sortedKey.takeStorage(IPosition(1, len), new Double[len], TAKE_OVER);
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117 | sortedData.takeStorage(shape, new Float[nelements], TAKE_OVER);
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118 | sortedFlag.takeStorage(shape, new uChar[nelements], TAKE_OVER);
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119 | for (uInt i = 0 ; i < len; i++) {
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120 | sortedKey[i] = key[sortIndex[i]];
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121 | }
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122 | for (uInt i = 0; i < len; ++i) {
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123 | sortedData.row(i) = data.row(sortIndex[i]);
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124 | sortedFlag.row(i) = flag.row(sortIndex[i]);
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125 | }
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126 | }
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127 |
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128 | };
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129 |
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130 | class SkyTableAccessor : public AccessorInterface<SkyTableAccessor, asap::STCalSkyTable>
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131 | {
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132 | public:
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133 | static Vector<Double> GetTime(const TableType *t) {return t->getTime();}
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134 | static Matrix<Float> GetData(const TableType *t) {return t->getSpectra();}
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135 | static Matrix<uChar> GetFlag(const TableType *t) {return t->getFlagtra();}
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136 | };
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137 |
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138 | class TsysTableAccessor : public AccessorInterface<TsysTableAccessor, asap::STCalTsysTable>
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139 | {
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140 | public:
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141 | static Vector<Double> GetTime(const TableType *t) {return t->getTime();}
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142 | static Matrix<Float> GetData(const TableType *t) {return t->getTsys();}
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143 | static Matrix<uChar> GetFlag(const TableType *t) {return t->getFlagtra();}
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144 | };
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145 |
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146 | inline uInt setupWorkingData(const uInt n, const Double *xin, const Float *yin,
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147 | const uChar *f, Double *xout, Float *yout)
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148 | {
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149 | uInt nValid = 0;
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150 | for (uInt i = 0; i < n; ++i) {
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151 | if (f[i] == 0) {
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152 | xout[nValid] = xin[i];
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153 | yout[nValid] = yin[i];
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154 | nValid++;
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155 | }
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156 | }
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157 | return nValid;
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158 | }
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159 |
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160 | template<class InterpolationHelperImpl>
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161 | class InterpolationHelperInterface
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162 | {
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163 | public:
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164 | static void Interpolate(const Double xref, const uInt nx, const uInt ny,
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165 | Double *xin, Float *yin, uChar *fin,
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166 | asap::Interpolator1D<Double, Float> *interpolator,
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167 | Double *xwork, Float *ywork,
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168 | Float *yout, uChar *fout)
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169 | {
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170 | for (uInt i = 0; i < ny; i++) {
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171 | Float *tmpY = &(yin[i * nx]);
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172 | uInt wnrow = setupWorkingData(nx, xin, tmpY, &(fin[i * nx]), xwork, ywork);
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173 | if (wnrow > 0) {
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174 | // any valid reference data
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175 | InterpolationHelperImpl::ProcessValid(xref, i, interpolator,
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176 | xwork, ywork, wnrow,
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177 | yout, fout);
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178 | }
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179 | else {
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180 | // no valid reference data
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181 | InterpolationHelperImpl::ProcessInvalid(xref, i, interpolator,
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182 | xin, tmpY, nx,
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183 | yout, fout);
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184 | }
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185 | }
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186 | }
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187 | };
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188 |
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189 | class SkyInterpolationHelper : public InterpolationHelperInterface<SkyInterpolationHelper>
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190 | {
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191 | public:
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192 | static void ProcessValid(const Double xref, const uInt index,
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193 | asap::Interpolator1D<Double, Float> *interpolator,
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194 | Double *xwork, Float *ywork,
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195 | const uInt wnrow, Float *yout, uChar *fout)
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196 | {
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197 | interpolator->setData(xwork, ywork, wnrow);
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198 | yout[index] = interpolator->interpolate(xref);
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199 | }
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200 | static void ProcessInvalid(const Double xref, const uInt index,
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201 | asap::Interpolator1D<Double, Float> *interpolator,
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202 | Double *xwork, Float *ywork,
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203 | const uInt wnrow, Float *yout, uChar *fout)
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204 | {
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205 | // interpolate data regardless of flag
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206 | ProcessValid(xref, index, interpolator, xwork, ywork, wnrow, yout, fout);
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207 | // flag this channel for calibrated data
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208 | fout[index] = 1 << 7; // user flag
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209 | }
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210 | };
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211 |
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212 | class TsysInterpolationHelper : public InterpolationHelperInterface<TsysInterpolationHelper>
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213 | {
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214 | public:
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215 | static void ProcessValid(const Double xref, const uInt index,
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216 | asap::Interpolator1D<Double, Float> *interpolator,
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217 | Double *xwork, Float *ywork,
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218 | const uInt wnrow, Float *yout, uChar *fout)
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219 | {
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220 | interpolator->setData(xwork, ywork, wnrow);
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221 | yout[index] = interpolator->interpolate(xref);
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222 | fout[index] = 0;
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223 | }
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224 | static void ProcessInvalid(const Double xref, const uInt index,
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225 | asap::Interpolator1D<Double, Float> *interpolator,
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226 | Double *xwork, Float *ywork,
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227 | const uInt wnrow, Float *yout, uChar *fout)
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228 | {
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229 | fout[index] = 1 << 7; // user flag
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230 | }
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231 | };
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232 |
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233 | inline void flagSpectrum(uInt &flagrow, Vector<uChar> &flagchan) {
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234 | flagrow = 1;
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235 | flagchan = (uChar)(1 << 7);
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236 | }
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237 |
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238 | inline void flagSpectra(Table &tab, const Vector<uInt> &rows) {
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239 | //os_ << LogIO::WARN << "No valid sky data in sky caltable. Completely flag Beam " << beamno << " Spw " << ifno << " Pol " << polno << LogIO::POST;
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240 | // Given sky tables are all empty
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241 | // So, flag all data
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242 | //Table tab = work_->table();
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243 | ArrayColumn<uChar> flCol(tab, "FLAGTRA");
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244 | ScalarColumn<uInt> frCol(tab, "FLAGROW");
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245 | Vector<uChar> flag;
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246 | uInt flagrow;
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247 | for (uInt i = 0; i < rows.nelements(); i++) {
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248 | uInt irow = rows[i];
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249 | flCol.get(irow, flag);
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250 | frCol.get(irow, flagrow);
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251 | flagSpectrum(flagrow, flag);
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252 | //flag = (uChar)(1 << 7);
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253 | flCol.put(irow, flag);
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254 | frCol.put(irow, flagrow);
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255 | }
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256 | }
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257 |
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258 | }
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259 |
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260 | namespace asap {
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261 | STApplyCal::STApplyCal()
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262 | {
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263 | init();
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264 | }
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265 |
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266 | STApplyCal::STApplyCal(CountedPtr<Scantable> target)
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267 | : target_(target)
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268 | {
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269 | init();
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270 | }
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271 |
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272 | STApplyCal::~STApplyCal()
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273 | {
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274 | }
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275 |
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276 | void STApplyCal::init()
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277 | {
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278 | caltype_ = STCalEnum::NoType;
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279 | doTsys_ = False;
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280 | iTime_ = STCalEnum::DefaultInterpolation;
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281 | iFreq_ = STCalEnum::DefaultInterpolation;
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282 | }
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283 |
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284 | void STApplyCal::reset()
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285 | {
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286 | // call init
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287 | init();
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288 |
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289 | // clear apply tables
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290 | // do not delete object here
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291 | skytable_.resize(0);
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292 | tsystable_.resize(0);
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293 |
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294 | // clear mapping for Tsys transfer
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295 | spwmap_.clear();
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296 |
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297 | // reset selector
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298 | sel_.reset();
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299 |
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300 | // delete interpolators
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301 | interpolatorT_ = 0;
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302 | interpolatorS_ = 0;
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303 | interpolatorF_ = 0;
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304 |
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305 | // clear working scantable
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306 | work_ = 0;
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307 |
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308 | // clear calibrator
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309 | calibrator_ = 0;
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310 | }
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311 |
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312 | void STApplyCal::completeReset()
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313 | {
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314 | reset();
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315 | target_ = 0;
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316 | }
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317 |
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318 | void STApplyCal::setTarget(CountedPtr<Scantable> target)
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319 | {
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320 | target_ = target;
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321 | }
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322 |
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323 | void STApplyCal::setTarget(const String &name)
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324 | {
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325 | // always create PlainTable
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326 | target_ = new Scantable(name, Table::Plain);
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327 | }
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328 |
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329 | void STApplyCal::push(STCalSkyTable *table)
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330 | {
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331 | os_.origin(LogOrigin("STApplyCal","push",WHERE));
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332 | skytable_.push_back(table);
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333 | STCalEnum::CalType caltype = STApplyTable::getCalType(table);
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334 | os_ << "caltype=" << caltype << LogIO::POST;
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335 | if (caltype_ == STCalEnum::NoType ||
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336 | caltype_ == STCalEnum::DefaultType ||
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337 | caltype_ == STCalEnum::CalTsys) {
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338 | caltype_ = caltype;
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339 | }
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340 | os_ << "caltype_=" << caltype_ << LogIO::POST;
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341 | }
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342 |
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343 | void STApplyCal::push(STCalTsysTable *table)
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344 | {
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345 | tsystable_.push_back(table);
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346 | doTsys_ = True;
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347 | }
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348 |
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349 | void STApplyCal::setTimeInterpolation(STCalEnum::InterpolationType itype, Int order)
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350 | {
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351 | iTime_ = itype;
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352 | order_ = order;
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353 | }
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354 |
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355 | void STApplyCal::setFrequencyInterpolation(STCalEnum::InterpolationType itype, Int order)
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356 | {
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357 | iFreq_ = itype;
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358 | order_ = order;
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359 | }
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360 |
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361 | void STApplyCal::setTsysTransfer(uInt from, Vector<uInt> to)
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362 | {
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363 | os_.origin(LogOrigin("STApplyCal","setTsysTransfer",WHERE));
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364 | os_ << "from=" << from << ", to=" << to << LogIO::POST;
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365 | map<uInt, Vector<uInt> >::iterator i = spwmap_.find(from);
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366 | if (i == spwmap_.end()) {
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367 | spwmap_.insert(pair<uInt, Vector<uInt> >(from, to));
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368 | }
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369 | else {
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370 | Vector<uInt> toNew = i->second;
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371 | spwmap_.erase(i);
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372 | uInt k = toNew.nelements();
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373 | toNew.resize(k+to.nelements(), True);
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374 | for (uInt i = 0; i < to.nelements(); i++)
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375 | toNew[i+k] = to[i];
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376 | spwmap_.insert(pair<uInt, Vector<uInt> >(from, toNew));
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377 | }
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378 | }
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379 |
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380 | void STApplyCal::apply(Bool insitu, Bool filltsys)
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381 | {
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382 | os_.origin(LogOrigin("STApplyCal","apply",WHERE));
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383 |
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384 | //assert(!target_.null());
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385 | assert_<AipsError>(!target_.null(),"You have to set target scantable first.");
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386 |
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387 | // calibrator
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388 | if (caltype_ == STCalEnum::CalPSAlma)
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389 | calibrator_ = new PSAlmaCalibrator();
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390 |
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391 | // interpolator
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392 | initInterpolator();
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393 |
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394 | // select data
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395 | sel_.reset();
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396 | sel_ = target_->getSelection();
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397 | if (caltype_ == STCalEnum::CalPSAlma ||
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398 | caltype_ == STCalEnum::CalPS) {
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399 | sel_.setTypes(vector<int>(1,(int)SrcType::PSON));
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400 | }
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401 | target_->setSelection(sel_);
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402 |
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403 | //os_ << "sel_.print()=" << sel_.print() << LogIO::POST;
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404 |
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405 | // working data
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406 | if (insitu) {
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407 | os_.origin(LogOrigin("STApplyCal","apply",WHERE));
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408 | os_ << "Overwrite input scantable" << LogIO::POST;
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409 | work_ = target_;
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410 | }
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411 | else {
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412 | os_.origin(LogOrigin("STApplyCal","apply",WHERE));
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413 | os_ << "Create output scantable from input" << LogIO::POST;
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414 | work_ = new Scantable(*target_, false);
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415 | }
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416 |
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417 | //os_ << "work_->nrow()=" << work_->nrow() << LogIO::POST;
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418 |
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419 | // list of apply tables for sky calibration
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420 | Vector<uInt> skycalList(skytable_.size());
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421 | uInt numSkyCal = 0;
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422 |
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423 | // list of apply tables for Tsys calibration
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424 | for (uInt i = 0 ; i < skytable_.size(); i++) {
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425 | STCalEnum::CalType caltype = STApplyTable::getCalType(skytable_[i]);
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426 | if (caltype == caltype_) {
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427 | skycalList[numSkyCal] = i;
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428 | numSkyCal++;
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429 | }
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430 | }
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431 | skycalList.resize(numSkyCal, True);
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432 |
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433 |
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434 | vector<string> cols( 3 ) ;
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435 | cols[0] = "BEAMNO" ;
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436 | cols[1] = "POLNO" ;
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437 | cols[2] = "IFNO" ;
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438 | CountedPtr<STIdxIter2> iter = new STIdxIter2(work_, cols) ;
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439 | double start = mathutil::gettimeofday_sec();
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440 | os_ << LogIO::DEBUGGING << "start iterative doapply: " << start << LogIO::POST;
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441 | while (!iter->pastEnd()) {
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442 | Record ids = iter->currentValue();
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443 | Vector<uInt> rows = iter->getRows(SHARE);
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444 | if (rows.nelements() > 0)
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445 | doapply(ids.asuInt("BEAMNO"), ids.asuInt("IFNO"), ids.asuInt("POLNO"), rows, skycalList, filltsys);
|
---|
446 | iter->next();
|
---|
447 | }
|
---|
448 | double end = mathutil::gettimeofday_sec();
|
---|
449 | os_ << LogIO::DEBUGGING << "end iterative doapply: " << end << LogIO::POST;
|
---|
450 | os_ << LogIO::DEBUGGING << "elapsed time for doapply: " << end - start << " sec" << LogIO::POST;
|
---|
451 |
|
---|
452 | target_->unsetSelection();
|
---|
453 | }
|
---|
454 |
|
---|
455 | void STApplyCal::doapply(uInt beamno, uInt ifno, uInt polno,
|
---|
456 | Vector<uInt> &rows,
|
---|
457 | Vector<uInt> &skylist,
|
---|
458 | Bool filltsys)
|
---|
459 | {
|
---|
460 | os_.origin(LogOrigin("STApplyCal","doapply",WHERE));
|
---|
461 | Bool doTsys = doTsys_;
|
---|
462 |
|
---|
463 | STSelector sel;
|
---|
464 | vector<int> id(1);
|
---|
465 | id[0] = beamno;
|
---|
466 | sel.setBeams(id);
|
---|
467 | id[0] = ifno;
|
---|
468 | sel.setIFs(id);
|
---|
469 | id[0] = polno;
|
---|
470 | sel.setPolarizations(id);
|
---|
471 |
|
---|
472 | // apply selection to apply tables
|
---|
473 | uInt nrowSkyTotal = 0;
|
---|
474 | uInt nrowTsysTotal = 0;
|
---|
475 | for (uInt i = 0; i < skylist.nelements(); i++) {
|
---|
476 | skytable_[skylist[i]]->setSelection(sel);
|
---|
477 | nrowSkyTotal += skytable_[skylist[i]]->nrow();
|
---|
478 | os_ << "nrowSkyTotal=" << nrowSkyTotal << LogIO::POST;
|
---|
479 | }
|
---|
480 |
|
---|
481 | // Skip IFNO without sky data
|
---|
482 | if (nrowSkyTotal == 0) {
|
---|
483 | if (skytable_.size() > 0) {
|
---|
484 | os_ << LogIO::WARN << "No data in sky caltable. Completely flag Beam " << beamno << " Spw " << ifno << " Pol " << polno << LogIO::POST;
|
---|
485 | // Given sky tables are all empty
|
---|
486 | // So, flag all data
|
---|
487 | flagSpectra(work_->table(), rows);
|
---|
488 | }
|
---|
489 | return;
|
---|
490 | }
|
---|
491 |
|
---|
492 | uInt nchanTsys = 0;
|
---|
493 | Vector<Double> ftsys;
|
---|
494 | uInt tsysifno = getIFForTsys(ifno);
|
---|
495 | Bool onlyInvalidTsys = False;
|
---|
496 | os_ << "tsysifno=" << (Int)tsysifno << LogIO::POST;
|
---|
497 | if (tsystable_.size() == 0) {
|
---|
498 | os_.origin(LogOrigin("STApplyTable", "doapply", WHERE));
|
---|
499 | os_ << "No Tsys tables are given. Skip Tsys calibratoin." << LogIO::POST;
|
---|
500 | doTsys = False;
|
---|
501 | }
|
---|
502 | else if (tsysifno == (uInt)-1) {
|
---|
503 | os_.origin(LogOrigin("STApplyTable", "doapply", WHERE));
|
---|
504 | os_ << "No corresponding Tsys for IFNO " << ifno << ". Skip Tsys calibration" << LogIO::POST;
|
---|
505 | doTsys = False;
|
---|
506 | }
|
---|
507 | else {
|
---|
508 | id[0] = (int)tsysifno;
|
---|
509 | sel.setIFs(id);
|
---|
510 | for (uInt i = 0; i < tsystable_.size() ; i++) {
|
---|
511 | tsystable_[i]->setSelection(sel);
|
---|
512 | uInt nrowThisTsys = tsystable_[i]->nrow();
|
---|
513 | nrowTsysTotal += nrowThisTsys;
|
---|
514 | if (nrowThisTsys > 0 && nchanTsys == 0) {
|
---|
515 | nchanTsys = tsystable_[i]->nchan(tsysifno);
|
---|
516 | ftsys = tsystable_[i]->getBaseFrequency(0);
|
---|
517 | }
|
---|
518 | }
|
---|
519 | if (nrowTsysTotal == 0) {
|
---|
520 | os_ << "No valid Tsys measurement. for Beam " << beamno << " Spw " << ifno << " Pol " << polno << ". Skip Tsys calibration." << LogIO::POST;
|
---|
521 | doTsys = False;
|
---|
522 | onlyInvalidTsys = True;
|
---|
523 | }
|
---|
524 | }
|
---|
525 |
|
---|
526 | uInt nchanSp = skytable_[skylist[0]]->nchan(ifno);
|
---|
527 | uInt nrowSky = nrowSkyTotal;
|
---|
528 | Vector<Double> timeSky;
|
---|
529 | Matrix<Float> spoff;
|
---|
530 | Matrix<uChar> flagoff;
|
---|
531 | SkyTableAccessor::GetSortedData(skytable_, skylist,
|
---|
532 | nrowSkyTotal, nchanSp,
|
---|
533 | timeSky, spoff, flagoff);
|
---|
534 | if (allNE(flagoff, (uChar)0)) {
|
---|
535 | os_ << LogIO::WARN << "No valid sky data in sky caltable. Completely flag Beam " << beamno << " Spw " << ifno << " Pol " << polno << LogIO::POST;
|
---|
536 | // Given sky tables are all invalid
|
---|
537 | // So, flag all data
|
---|
538 | flagSpectra(work_->table(), rows);
|
---|
539 | }
|
---|
540 | nrowSky = timeSky.nelements();
|
---|
541 |
|
---|
542 | uInt nrowTsys = nrowTsysTotal;
|
---|
543 | Vector<Double> timeTsys;
|
---|
544 | Matrix<Float> tsys;
|
---|
545 | Matrix<uChar> flagtsys;
|
---|
546 | if (doTsys) {
|
---|
547 | //os_ << "doTsys" << LogIO::POST;
|
---|
548 | Vector<uInt> tsyslist(tsystable_.size());
|
---|
549 | indgen(tsyslist);
|
---|
550 | TsysTableAccessor::GetSortedData(tsystable_, tsyslist,
|
---|
551 | nrowTsysTotal, nchanTsys,
|
---|
552 | timeTsys, tsys, flagtsys);
|
---|
553 | nrowTsys = timeTsys.nelements();
|
---|
554 |
|
---|
555 | if (allNE(flagtsys, (uChar)0)) {
|
---|
556 | os_ << LogIO::WARN << "No valid Tsys measurement for Beam " << beamno << " Spw " << ifno << " Pol " << polno << ". Skip Tsys calibration." << LogIO::POST;
|
---|
557 | doTsys = False;
|
---|
558 | onlyInvalidTsys = True;
|
---|
559 | }
|
---|
560 | }
|
---|
561 |
|
---|
562 | Table tab = work_->table();
|
---|
563 | ArrayColumn<Float> spCol(tab, "SPECTRA");
|
---|
564 | ArrayColumn<uChar> flCol(tab, "FLAGTRA");
|
---|
565 | ArrayColumn<Float> tsysCol(tab, "TSYS");
|
---|
566 | ScalarColumn<Double> timeCol(tab, "TIME");
|
---|
567 | ScalarColumn<uInt> frCol(tab, "FLAGROW");
|
---|
568 |
|
---|
569 | // Array for scaling factor (aka Tsys)
|
---|
570 | Vector<Float> iTsys(IPosition(1, nchanSp), new Float[nchanSp], TAKE_OVER);
|
---|
571 | // Array for Tsys interpolation
|
---|
572 | // This is empty array and is never referenced if doTsys == false
|
---|
573 | // (i.e. nchanTsys == 0)
|
---|
574 | Vector<Float> iTsysT(IPosition(1, nchanTsys), new Float[nchanTsys], TAKE_OVER);
|
---|
575 |
|
---|
576 | // Array for interpolated off spectrum
|
---|
577 | Vector<Float> iOff(IPosition(1, nchanSp), new Float[nchanSp], TAKE_OVER);
|
---|
578 |
|
---|
579 | // working array for interpolation with flags
|
---|
580 | uInt arraySize = max(max(nrowTsys, nchanTsys), nrowSky);
|
---|
581 | Vector<Double> xwork(IPosition(1, arraySize), new Double[arraySize], TAKE_OVER);
|
---|
582 | Vector<Float> ywork(IPosition(1, arraySize), new Float[arraySize], TAKE_OVER);
|
---|
583 | Vector<uChar> fwork(IPosition(1, nchanTsys), new uChar[nchanTsys], TAKE_OVER);
|
---|
584 |
|
---|
585 | // data array
|
---|
586 | Vector<Float> on(IPosition(1, nchanSp), new Float[nchanSp], TAKE_OVER);
|
---|
587 | Vector<uChar> flag(on.shape(), new uChar[on.shape().product()], TAKE_OVER);
|
---|
588 |
|
---|
589 | for (uInt i = 0; i < rows.nelements(); i++) {
|
---|
590 | //os_ << "start i = " << i << " (row = " << rows[i] << ")" << LogIO::POST;
|
---|
591 | uInt irow = rows[i];
|
---|
592 |
|
---|
593 | // target spectral data
|
---|
594 | spCol.get(irow, on);
|
---|
595 | flCol.get(irow, flag);
|
---|
596 | uInt flagrow = frCol(irow);
|
---|
597 | //os_ << "on=" << on[0] << LogIO::POST;
|
---|
598 | calibrator_->setSource(on);
|
---|
599 |
|
---|
600 | // interpolation
|
---|
601 | Double t0 = timeCol(irow);
|
---|
602 | Double *xwork_p = xwork.data();
|
---|
603 | Float *ywork_p = ywork.data();
|
---|
604 | SkyInterpolationHelper::Interpolate(t0, nrowSky, nchanSp,
|
---|
605 | timeSky.data(), spoff.data(),
|
---|
606 | flagoff.data(), &(*interpolatorS_),
|
---|
607 | xwork_p, ywork_p,
|
---|
608 | iOff.data(), flag.data());
|
---|
609 | calibrator_->setReference(iOff);
|
---|
610 |
|
---|
611 | if (doTsys) {
|
---|
612 | // Tsys correction
|
---|
613 | // interpolation on time axis
|
---|
614 | TsysInterpolationHelper::Interpolate(t0, nrowTsys, nchanTsys,
|
---|
615 | timeTsys.data(), tsys.data(),
|
---|
616 | flagtsys.data(), &(*interpolatorT_),
|
---|
617 | xwork_p, ywork_p,
|
---|
618 | iTsysT.data(), fwork.data());
|
---|
619 | uChar *fwork_p = fwork.data();
|
---|
620 | if (nchanSp == 1) {
|
---|
621 | // take average
|
---|
622 | iTsys[0] = mean(iTsysT);
|
---|
623 | }
|
---|
624 | else {
|
---|
625 | // interpolation on frequency axis
|
---|
626 | Vector<Double> fsp = getBaseFrequency(rows[i]);
|
---|
627 | uInt wnchan = setupWorkingData(nchanTsys, ftsys.data(), iTsysT.data(),
|
---|
628 | fwork_p, xwork_p, ywork_p);
|
---|
629 | assert(wnchan > 0);
|
---|
630 | if (wnchan == 0) {
|
---|
631 | throw AipsError("No valid Tsys measurements.");
|
---|
632 | }
|
---|
633 | interpolatorF_->setData(xwork_p, ywork_p, wnchan);
|
---|
634 | for (uInt ichan = 0; ichan < nchanSp; ichan++) {
|
---|
635 | iTsys[ichan] = interpolatorF_->interpolate(fsp[ichan]);
|
---|
636 | }
|
---|
637 | }
|
---|
638 | }
|
---|
639 | else {
|
---|
640 | Vector<Float> tsysInRow = tsysCol(irow);
|
---|
641 | if (tsysInRow.nelements() == 1) {
|
---|
642 | iTsys = tsysInRow[0];
|
---|
643 | }
|
---|
644 | else {
|
---|
645 | for (uInt ichan = 0; ichan < tsysInRow.nelements(); ++ichan)
|
---|
646 | iTsys[ichan] = tsysInRow[ichan];
|
---|
647 | }
|
---|
648 | }
|
---|
649 | //os_ << "iTsys=" << iTsys[0] << LogIO::POST;
|
---|
650 | calibrator_->setScaler(iTsys);
|
---|
651 |
|
---|
652 | // do calibration
|
---|
653 | calibrator_->calibrate();
|
---|
654 |
|
---|
655 | // flag spectrum if no valid Tsys measurement available
|
---|
656 | if (onlyInvalidTsys) {
|
---|
657 | flagSpectrum(flagrow, flag);
|
---|
658 | }
|
---|
659 |
|
---|
660 | // update table
|
---|
661 | //os_ << "calibrated=" << calibrator_->getCalibrated()[0] << LogIO::POST;
|
---|
662 | spCol.put(irow, calibrator_->getCalibrated());
|
---|
663 | flCol.put(irow, flag);
|
---|
664 | frCol.put(irow, flagrow);
|
---|
665 | if (filltsys && !onlyInvalidTsys)
|
---|
666 | tsysCol.put(irow, iTsys);
|
---|
667 | }
|
---|
668 |
|
---|
669 |
|
---|
670 | // reset selection on apply tables
|
---|
671 | for (uInt i = 0; i < skylist.nelements(); i++)
|
---|
672 | skytable_[i]->unsetSelection();
|
---|
673 | for (uInt i = 0; i < tsystable_.size(); i++)
|
---|
674 | tsystable_[i]->unsetSelection();
|
---|
675 |
|
---|
676 |
|
---|
677 | // reset interpolator
|
---|
678 | interpolatorS_->reset();
|
---|
679 | interpolatorF_->reset();
|
---|
680 | interpolatorT_->reset();
|
---|
681 | }
|
---|
682 |
|
---|
683 | uInt STApplyCal::getIFForTsys(uInt to)
|
---|
684 | {
|
---|
685 | for (map<casa::uInt, Vector<uInt> >::iterator i = spwmap_.begin();
|
---|
686 | i != spwmap_.end(); i++) {
|
---|
687 | Vector<uInt> tolist = i->second;
|
---|
688 | os_ << "from=" << i->first << ": tolist=" << tolist << LogIO::POST;
|
---|
689 | for (uInt j = 0; j < tolist.nelements(); j++) {
|
---|
690 | if (tolist[j] == to)
|
---|
691 | return i->first;
|
---|
692 | }
|
---|
693 | }
|
---|
694 | return (uInt)-1;
|
---|
695 | }
|
---|
696 |
|
---|
697 | void STApplyCal::save(const String &name)
|
---|
698 | {
|
---|
699 | //assert(!work_.null());
|
---|
700 | assert_<AipsError>(!work_.null(),"You have to execute apply method first.");
|
---|
701 |
|
---|
702 | work_->setSelection(sel_);
|
---|
703 | work_->makePersistent(name);
|
---|
704 | work_->unsetSelection();
|
---|
705 | }
|
---|
706 |
|
---|
707 | Vector<Double> STApplyCal::getBaseFrequency(uInt whichrow)
|
---|
708 | {
|
---|
709 | //assert(whichrow <= (uInt)work_->nrow());
|
---|
710 | assert_<AipsError>(whichrow <= (uInt)work_->nrow(),"row index out of range.");
|
---|
711 | ROTableColumn col(work_->table(), "IFNO");
|
---|
712 | uInt ifno = col.asuInt(whichrow);
|
---|
713 | col.attach(work_->table(), "FREQ_ID");
|
---|
714 | uInt freqid = col.asuInt(whichrow);
|
---|
715 | uInt nc = work_->nchan(ifno);
|
---|
716 | STFrequencies ftab = work_->frequencies();
|
---|
717 | Double rp, rf, inc;
|
---|
718 | ftab.getEntry(rp, rf, inc, freqid);
|
---|
719 | Vector<Double> r(nc);
|
---|
720 | indgen(r, rf-rp*inc, inc);
|
---|
721 | return r;
|
---|
722 | }
|
---|
723 |
|
---|
724 | void STApplyCal::initInterpolator()
|
---|
725 | {
|
---|
726 | os_.origin(LogOrigin("STApplyCal","initInterpolator",WHERE));
|
---|
727 | int order = (order_ > 0) ? order_ : 1;
|
---|
728 | switch (iTime_) {
|
---|
729 | case STCalEnum::NearestInterpolation:
|
---|
730 | {
|
---|
731 | os_ << "use NearestInterpolator in time axis" << LogIO::POST;
|
---|
732 | interpolatorS_ = new NearestInterpolator1D<Double, Float>();
|
---|
733 | interpolatorT_ = new NearestInterpolator1D<Double, Float>();
|
---|
734 | break;
|
---|
735 | }
|
---|
736 | case STCalEnum::LinearInterpolation:
|
---|
737 | {
|
---|
738 | os_ << "use BufferedLinearInterpolator in time axis" << LogIO::POST;
|
---|
739 | interpolatorS_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
740 | interpolatorT_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
741 | break;
|
---|
742 | }
|
---|
743 | case STCalEnum::CubicSplineInterpolation:
|
---|
744 | {
|
---|
745 | os_ << "use CubicSplineInterpolator in time axis" << LogIO::POST;
|
---|
746 | interpolatorS_ = new CubicSplineInterpolator1D<Double, Float>();
|
---|
747 | interpolatorT_ = new CubicSplineInterpolator1D<Double, Float>();
|
---|
748 | break;
|
---|
749 | }
|
---|
750 | case STCalEnum::PolynomialInterpolation:
|
---|
751 | {
|
---|
752 | os_ << "use PolynomialInterpolator in time axis" << LogIO::POST;
|
---|
753 | if (order == 0) {
|
---|
754 | interpolatorS_ = new NearestInterpolator1D<Double, Float>();
|
---|
755 | interpolatorT_ = new NearestInterpolator1D<Double, Float>();
|
---|
756 | }
|
---|
757 | else {
|
---|
758 | interpolatorS_ = new PolynomialInterpolator1D<Double, Float>();
|
---|
759 | interpolatorT_ = new PolynomialInterpolator1D<Double, Float>();
|
---|
760 | interpolatorS_->setOrder(order);
|
---|
761 | interpolatorT_->setOrder(order);
|
---|
762 | }
|
---|
763 | break;
|
---|
764 | }
|
---|
765 | default:
|
---|
766 | {
|
---|
767 | os_ << "use BufferedLinearInterpolator in time axis" << LogIO::POST;
|
---|
768 | interpolatorS_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
769 | interpolatorT_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
770 | break;
|
---|
771 | }
|
---|
772 | }
|
---|
773 |
|
---|
774 | switch (iFreq_) {
|
---|
775 | case STCalEnum::NearestInterpolation:
|
---|
776 | {
|
---|
777 | os_ << "use NearestInterpolator in frequency axis" << LogIO::POST;
|
---|
778 | interpolatorF_ = new NearestInterpolator1D<Double, Float>();
|
---|
779 | break;
|
---|
780 | }
|
---|
781 | case STCalEnum::LinearInterpolation:
|
---|
782 | {
|
---|
783 | os_ << "use BufferedLinearInterpolator in frequency axis" << LogIO::POST;
|
---|
784 | interpolatorF_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
785 | break;
|
---|
786 | }
|
---|
787 | case STCalEnum::CubicSplineInterpolation:
|
---|
788 | {
|
---|
789 | os_ << "use CubicSplineInterpolator in frequency axis" << LogIO::POST;
|
---|
790 | interpolatorF_ = new CubicSplineInterpolator1D<Double, Float>();
|
---|
791 | break;
|
---|
792 | }
|
---|
793 | case STCalEnum::PolynomialInterpolation:
|
---|
794 | {
|
---|
795 | os_ << "use PolynomialInterpolator in frequency axis" << LogIO::POST;
|
---|
796 | if (order == 0) {
|
---|
797 | interpolatorF_ = new NearestInterpolator1D<Double, Float>();
|
---|
798 | }
|
---|
799 | else {
|
---|
800 | interpolatorF_ = new PolynomialInterpolator1D<Double, Float>();
|
---|
801 | interpolatorF_->setOrder(order);
|
---|
802 | }
|
---|
803 | break;
|
---|
804 | }
|
---|
805 | default:
|
---|
806 | {
|
---|
807 | os_ << "use LinearInterpolator in frequency axis" << LogIO::POST;
|
---|
808 | interpolatorF_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
809 | break;
|
---|
810 | }
|
---|
811 | }
|
---|
812 | }
|
---|
813 |
|
---|
814 | }
|
---|