[2720] | 1 | //
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| 2 | // C++ Implementation: STApplyCal
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| 3 | //
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| 4 | // Description:
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| 5 | //
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| 6 | //
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| 7 | // Author: Takeshi Nakazato <takeshi.nakazato@nao.ac.jp> (C) 2012
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| 8 | //
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| 9 | // Copyright: See COPYING file that comes with this distribution
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| 10 | //
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| 11 | //
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[2722] | 12 | #include <assert.h>
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[2720] | 13 |
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| 14 | #include <casa/Arrays/Array.h>
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| 15 | #include <casa/Arrays/Vector.h>
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| 16 | #include <casa/Arrays/Matrix.h>
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| 17 | #include <casa/Arrays/ArrayIO.h>
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| 18 | #include <casa/Arrays/ArrayMath.h>
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| 19 | #include <casa/BasicSL/String.h>
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| 20 | #include <casa/Logging/LogIO.h>
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| 21 | #include <casa/Exceptions/Error.h>
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| 22 | #include <casa/Utilities/CountedPtr.h>
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| 23 | #include <casa/Utilities/Sort.h>
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[2756] | 24 | #include <casa/Utilities/Assert.h>
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[2720] | 25 | #include <tables/Tables/Table.h>
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| 26 |
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| 27 | #include "Scantable.h"
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| 28 | #include "STApplyCal.h"
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| 29 | #include "STApplyTable.h"
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| 30 | #include "STCalTsysTable.h"
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| 31 | #include "STCalSkyTable.h"
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| 32 | #include "STCalEnum.h"
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| 33 | #include "STIdxIter.h"
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| 34 | #include "Calibrator.h"
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| 35 | #include "PSAlmaCalibrator.h"
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[2733] | 36 | #include "Interpolator1D.h"
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[2720] | 37 | #include "NearestInterpolator1D.h"
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[2727] | 38 | #include "BufferedLinearInterpolator1D.h"
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| 39 | #include "PolynomialInterpolator1D.h"
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| 40 | #include "CubicSplineInterpolator1D.h"
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[2720] | 41 | #include <atnf/PKSIO/SrcType.h>
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| 42 |
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| 43 |
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[3106] | 44 | using namespace casacore;
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[2720] | 45 | using namespace std;
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| 46 |
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[2963] | 47 | namespace {
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[2964] | 48 | template<class Accessor, class Type>
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| 49 | class AccessorInterface
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[2963] | 50 | {
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[2964] | 51 | public:
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| 52 | typedef Type TableType;
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| 53 | static void GetSortedData(const vector<TableType *> &tablelist,
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| 54 | const Vector<uInt> &tableIndex,
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| 55 | const uInt nrow,
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| 56 | const uInt nchan,
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| 57 | Vector<Double> &time,
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| 58 | Matrix<Float> &data,
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| 59 | Matrix<uChar> &flag)
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| 60 | {
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| 61 | Vector<Double> timeUnsorted;
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| 62 | Matrix<Float> dataUnsorted;
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| 63 | Matrix<uChar> flagUnsorted;
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| 64 | GetFromTable(tablelist, tableIndex, nrow, nchan,
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| 65 | timeUnsorted, dataUnsorted, flagUnsorted);
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| 66 | SortData(timeUnsorted, dataUnsorted, flagUnsorted,
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| 67 | time, data, flag);
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| 68 | }
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| 69 | private:
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| 70 | static void GetFromTable(const vector<TableType *> &tableList,
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| 71 | const Vector<uInt> &tableIndex,
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| 72 | const uInt nrow,
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| 73 | const uInt nchan,
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| 74 | Vector<Double> &time,
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| 75 | Matrix<Float> &data,
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| 76 | Matrix<uChar> &flag)
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| 77 | {
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| 78 | time.resize(nrow, False);
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| 79 | const IPosition shape(2, nrow, nchan);
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| 80 | data.resize(shape, False);
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| 81 | flag.resize(shape, False);
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| 82 | uInt rowIndex = 0;
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| 83 | for (uInt i = 0 ; i < tableIndex.nelements(); i++) {
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| 84 | TableType *p = tableList[tableIndex[i]];
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| 85 | Vector<Double> t = Accessor::GetTime(p);
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| 86 | Matrix<Float> dt = Accessor::GetData(p);
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| 87 | Matrix<uChar> fl = Accessor::GetFlag(p);
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| 88 | for (uInt j = 0; j < t.nelements(); j++) {
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| 89 | time[rowIndex] = t[j];
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| 90 | data.row(rowIndex) = dt.column(j);
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| 91 | flag.row(rowIndex) = fl.column(j);
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| 92 | rowIndex++;
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| 93 | }
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| 94 | }
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| 95 | }
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[2963] | 96 |
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[2964] | 97 | static Vector<uInt> IndexSort(const Vector<Double> &t)
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| 98 | {
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| 99 | Sort sort;
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| 100 | sort.sortKey(&t[0], TpDouble, 0, Sort::Ascending);
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| 101 | Vector<uInt> idx;
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| 102 | sort.sort(idx, t.nelements(), Sort::QuickSort|Sort::NoDuplicates);
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| 103 | return idx;
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| 104 | }
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| 105 |
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| 106 | static void SortData(const Vector<Double> &key, const Matrix<Float> &data,
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| 107 | const Matrix<uChar> &flag,
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| 108 | Vector<Double> &sortedKey, Matrix<Float> &sortedData,
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| 109 | Matrix<uChar> &sortedFlag)
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| 110 | {
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| 111 | Vector<uInt> sortIndex = IndexSort(key);
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| 112 | uInt len = sortIndex.nelements();
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| 113 | IPosition shape = data.shape();
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| 114 | shape[0] = len;
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| 115 | Int64 nelements = shape.product();
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| 116 | sortedKey.takeStorage(IPosition(1, len), new Double[len], TAKE_OVER);
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| 117 | sortedData.takeStorage(shape, new Float[nelements], TAKE_OVER);
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| 118 | sortedFlag.takeStorage(shape, new uChar[nelements], TAKE_OVER);
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| 119 | for (uInt i = 0 ; i < len; i++) {
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| 120 | sortedKey[i] = key[sortIndex[i]];
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| 121 | }
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| 122 | for (uInt i = 0; i < len; ++i) {
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| 123 | sortedData.row(i) = data.row(sortIndex[i]);
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| 124 | sortedFlag.row(i) = flag.row(sortIndex[i]);
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| 125 | }
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| 126 | }
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| 127 |
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| 128 | };
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| 129 |
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| 130 | class SkyTableAccessor : public AccessorInterface<SkyTableAccessor, asap::STCalSkyTable>
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[2963] | 131 | {
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[2964] | 132 | public:
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| 133 | static Vector<Double> GetTime(const TableType *t) {return t->getTime();}
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| 134 | static Matrix<Float> GetData(const TableType *t) {return t->getSpectra();}
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| 135 | static Matrix<uChar> GetFlag(const TableType *t) {return t->getFlagtra();}
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| 136 | };
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| 137 |
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| 138 | class TsysTableAccessor : public AccessorInterface<TsysTableAccessor, asap::STCalTsysTable>
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| 139 | {
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| 140 | public:
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| 141 | static Vector<Double> GetTime(const TableType *t) {return t->getTime();}
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| 142 | static Matrix<Float> GetData(const TableType *t) {return t->getTsys();}
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| 143 | static Matrix<uChar> GetFlag(const TableType *t) {return t->getFlagtra();}
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| 144 | };
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[2965] | 145 |
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| 146 | inline uInt setupWorkingData(const uInt n, const Double *xin, const Float *yin,
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| 147 | const uChar *f, Double *xout, Float *yout)
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| 148 | {
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| 149 | uInt nValid = 0;
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| 150 | for (uInt i = 0; i < n; ++i) {
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| 151 | if (f[i] == 0) {
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| 152 | xout[nValid] = xin[i];
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| 153 | yout[nValid] = yin[i];
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| 154 | nValid++;
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| 155 | }
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| 156 | }
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| 157 | return nValid;
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[2963] | 158 | }
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| 159 |
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[2965] | 160 | template<class InterpolationHelperImpl>
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| 161 | class InterpolationHelperInterface
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| 162 | {
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| 163 | public:
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| 164 | static void Interpolate(const Double xref, const uInt nx, const uInt ny,
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| 165 | Double *xin, Float *yin, uChar *fin,
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| 166 | asap::Interpolator1D<Double, Float> *interpolator,
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| 167 | Double *xwork, Float *ywork,
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| 168 | Float *yout, uChar *fout)
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| 169 | {
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| 170 | for (uInt i = 0; i < ny; i++) {
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| 171 | Float *tmpY = &(yin[i * nx]);
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| 172 | uInt wnrow = setupWorkingData(nx, xin, tmpY, &(fin[i * nx]), xwork, ywork);
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| 173 | if (wnrow > 0) {
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| 174 | // any valid reference data
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| 175 | InterpolationHelperImpl::ProcessValid(xref, i, interpolator,
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| 176 | xwork, ywork, wnrow,
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| 177 | yout, fout);
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| 178 | }
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| 179 | else {
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| 180 | // no valid reference data
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| 181 | InterpolationHelperImpl::ProcessInvalid(xref, i, interpolator,
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| 182 | xin, tmpY, nx,
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| 183 | yout, fout);
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| 184 | }
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| 185 | }
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| 186 | }
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| 187 | };
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| 188 |
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| 189 | class SkyInterpolationHelper : public InterpolationHelperInterface<SkyInterpolationHelper>
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| 190 | {
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| 191 | public:
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| 192 | static void ProcessValid(const Double xref, const uInt index,
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| 193 | asap::Interpolator1D<Double, Float> *interpolator,
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| 194 | Double *xwork, Float *ywork,
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[3077] | 195 | const uInt wnrow, Float *yout, uChar */*fout*/)
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[2965] | 196 | {
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| 197 | interpolator->setData(xwork, ywork, wnrow);
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| 198 | yout[index] = interpolator->interpolate(xref);
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| 199 | }
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| 200 | static void ProcessInvalid(const Double xref, const uInt index,
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| 201 | asap::Interpolator1D<Double, Float> *interpolator,
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| 202 | Double *xwork, Float *ywork,
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| 203 | const uInt wnrow, Float *yout, uChar *fout)
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| 204 | {
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| 205 | // interpolate data regardless of flag
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| 206 | ProcessValid(xref, index, interpolator, xwork, ywork, wnrow, yout, fout);
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| 207 | // flag this channel for calibrated data
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| 208 | fout[index] = 1 << 7; // user flag
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| 209 | }
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| 210 | };
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| 211 |
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| 212 | class TsysInterpolationHelper : public InterpolationHelperInterface<TsysInterpolationHelper>
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| 213 | {
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| 214 | public:
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| 215 | static void ProcessValid(const Double xref, const uInt index,
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| 216 | asap::Interpolator1D<Double, Float> *interpolator,
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| 217 | Double *xwork, Float *ywork,
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| 218 | const uInt wnrow, Float *yout, uChar *fout)
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| 219 | {
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| 220 | interpolator->setData(xwork, ywork, wnrow);
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| 221 | yout[index] = interpolator->interpolate(xref);
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| 222 | fout[index] = 0;
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| 223 | }
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[3077] | 224 | static void ProcessInvalid(const Double /*xref*/, const uInt index,
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| 225 | asap::Interpolator1D<Double, Float> */*interpolator*/,
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| 226 | Double */*xwork*/, Float */*ywork*/,
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| 227 | const uInt /*wnrow*/, Float */*yout*/, uChar *fout)
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[2965] | 228 | {
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| 229 | fout[index] = 1 << 7; // user flag
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| 230 | }
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| 231 | };
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[3021] | 232 |
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| 233 | inline void flagSpectrum(uInt &flagrow, Vector<uChar> &flagchan) {
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| 234 | flagrow = 1;
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| 235 | flagchan = (uChar)(1 << 7);
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[2965] | 236 | }
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| 237 |
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[3021] | 238 | inline void flagSpectra(Table &tab, const Vector<uInt> &rows) {
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| 239 | //os_ << LogIO::WARN << "No valid sky data in sky caltable. Completely flag Beam " << beamno << " Spw " << ifno << " Pol " << polno << LogIO::POST;
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| 240 | // Given sky tables are all empty
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| 241 | // So, flag all data
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| 242 | //Table tab = work_->table();
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| 243 | ArrayColumn<uChar> flCol(tab, "FLAGTRA");
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| 244 | ScalarColumn<uInt> frCol(tab, "FLAGROW");
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| 245 | Vector<uChar> flag;
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| 246 | uInt flagrow;
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| 247 | for (uInt i = 0; i < rows.nelements(); i++) {
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| 248 | uInt irow = rows[i];
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| 249 | flCol.get(irow, flag);
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| 250 | frCol.get(irow, flagrow);
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| 251 | flagSpectrum(flagrow, flag);
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| 252 | //flag = (uChar)(1 << 7);
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| 253 | flCol.put(irow, flag);
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| 254 | frCol.put(irow, flagrow);
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| 255 | }
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| 256 | }
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| 257 |
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| 258 | }
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| 259 |
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[2720] | 260 | namespace asap {
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| 261 | STApplyCal::STApplyCal()
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| 262 | {
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| 263 | init();
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| 264 | }
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| 265 |
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| 266 | STApplyCal::STApplyCal(CountedPtr<Scantable> target)
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| 267 | : target_(target)
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| 268 | {
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| 269 | init();
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| 270 | }
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| 271 |
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| 272 | STApplyCal::~STApplyCal()
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| 273 | {
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| 274 | }
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| 275 |
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| 276 | void STApplyCal::init()
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| 277 | {
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| 278 | caltype_ = STCalEnum::NoType;
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| 279 | doTsys_ = False;
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[2742] | 280 | iTime_ = STCalEnum::DefaultInterpolation;
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| 281 | iFreq_ = STCalEnum::DefaultInterpolation;
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[2720] | 282 | }
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| 283 |
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[2735] | 284 | void STApplyCal::reset()
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| 285 | {
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[2742] | 286 | // call init
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| 287 | init();
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| 288 |
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| 289 | // clear apply tables
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| 290 | // do not delete object here
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| 291 | skytable_.resize(0);
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| 292 | tsystable_.resize(0);
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| 293 |
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| 294 | // clear mapping for Tsys transfer
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| 295 | spwmap_.clear();
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| 296 |
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| 297 | // reset selector
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| 298 | sel_.reset();
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| 299 |
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| 300 | // delete interpolators
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| 301 | interpolatorT_ = 0;
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| 302 | interpolatorS_ = 0;
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| 303 | interpolatorF_ = 0;
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| 304 |
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| 305 | // clear working scantable
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| 306 | work_ = 0;
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| 307 |
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| 308 | // clear calibrator
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| 309 | calibrator_ = 0;
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[2735] | 310 | }
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| 311 |
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| 312 | void STApplyCal::completeReset()
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| 313 | {
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| 314 | reset();
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| 315 | target_ = 0;
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| 316 | }
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| 317 |
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[2720] | 318 | void STApplyCal::setTarget(CountedPtr<Scantable> target)
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| 319 | {
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| 320 | target_ = target;
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| 321 | }
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| 322 |
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| 323 | void STApplyCal::setTarget(const String &name)
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| 324 | {
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| 325 | // always create PlainTable
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| 326 | target_ = new Scantable(name, Table::Plain);
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| 327 | }
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| 328 |
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| 329 | void STApplyCal::push(STCalSkyTable *table)
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| 330 | {
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[2735] | 331 | os_.origin(LogOrigin("STApplyCal","push",WHERE));
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[2720] | 332 | skytable_.push_back(table);
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| 333 | STCalEnum::CalType caltype = STApplyTable::getCalType(table);
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| 334 | os_ << "caltype=" << caltype << LogIO::POST;
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| 335 | if (caltype_ == STCalEnum::NoType ||
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| 336 | caltype_ == STCalEnum::DefaultType ||
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| 337 | caltype_ == STCalEnum::CalTsys) {
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| 338 | caltype_ = caltype;
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| 339 | }
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| 340 | os_ << "caltype_=" << caltype_ << LogIO::POST;
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| 341 | }
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| 342 |
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| 343 | void STApplyCal::push(STCalTsysTable *table)
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| 344 | {
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| 345 | tsystable_.push_back(table);
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| 346 | doTsys_ = True;
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| 347 | }
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| 348 |
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[2735] | 349 | void STApplyCal::setTimeInterpolation(STCalEnum::InterpolationType itype, Int order)
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[2720] | 350 | {
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[2735] | 351 | iTime_ = itype;
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[2720] | 352 | order_ = order;
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| 353 | }
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| 354 |
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[2735] | 355 | void STApplyCal::setFrequencyInterpolation(STCalEnum::InterpolationType itype, Int order)
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| 356 | {
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| 357 | iFreq_ = itype;
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| 358 | order_ = order;
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| 359 | }
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| 360 |
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[2720] | 361 | void STApplyCal::setTsysTransfer(uInt from, Vector<uInt> to)
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| 362 | {
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[2735] | 363 | os_.origin(LogOrigin("STApplyCal","setTsysTransfer",WHERE));
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[2720] | 364 | os_ << "from=" << from << ", to=" << to << LogIO::POST;
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| 365 | map<uInt, Vector<uInt> >::iterator i = spwmap_.find(from);
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| 366 | if (i == spwmap_.end()) {
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| 367 | spwmap_.insert(pair<uInt, Vector<uInt> >(from, to));
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| 368 | }
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| 369 | else {
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| 370 | Vector<uInt> toNew = i->second;
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| 371 | spwmap_.erase(i);
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| 372 | uInt k = toNew.nelements();
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| 373 | toNew.resize(k+to.nelements(), True);
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| 374 | for (uInt i = 0; i < to.nelements(); i++)
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| 375 | toNew[i+k] = to[i];
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| 376 | spwmap_.insert(pair<uInt, Vector<uInt> >(from, toNew));
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| 377 | }
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| 378 | }
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| 379 |
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[2742] | 380 | void STApplyCal::apply(Bool insitu, Bool filltsys)
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[2720] | 381 | {
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[2735] | 382 | os_.origin(LogOrigin("STApplyCal","apply",WHERE));
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[2750] | 383 |
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[2756] | 384 | //assert(!target_.null());
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| 385 | assert_<AipsError>(!target_.null(),"You have to set target scantable first.");
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[2750] | 386 |
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[2720] | 387 | // calibrator
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| 388 | if (caltype_ == STCalEnum::CalPSAlma)
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| 389 | calibrator_ = new PSAlmaCalibrator();
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| 390 |
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| 391 | // interpolator
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[2727] | 392 | initInterpolator();
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[2720] | 393 |
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| 394 | // select data
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| 395 | sel_.reset();
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[2806] | 396 | sel_ = target_->getSelection();
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[2720] | 397 | if (caltype_ == STCalEnum::CalPSAlma ||
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| 398 | caltype_ == STCalEnum::CalPS) {
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| 399 | sel_.setTypes(vector<int>(1,(int)SrcType::PSON));
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| 400 | }
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| 401 | target_->setSelection(sel_);
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| 402 |
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[2735] | 403 | //os_ << "sel_.print()=" << sel_.print() << LogIO::POST;
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[2720] | 404 |
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| 405 | // working data
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[2750] | 406 | if (insitu) {
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| 407 | os_.origin(LogOrigin("STApplyCal","apply",WHERE));
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| 408 | os_ << "Overwrite input scantable" << LogIO::POST;
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[2720] | 409 | work_ = target_;
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[2750] | 410 | }
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| 411 | else {
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| 412 | os_.origin(LogOrigin("STApplyCal","apply",WHERE));
|
---|
| 413 | os_ << "Create output scantable from input" << LogIO::POST;
|
---|
[2720] | 414 | work_ = new Scantable(*target_, false);
|
---|
[2750] | 415 | }
|
---|
[2720] | 416 |
|
---|
[2735] | 417 | //os_ << "work_->nrow()=" << work_->nrow() << LogIO::POST;
|
---|
[2720] | 418 |
|
---|
| 419 | // list of apply tables for sky calibration
|
---|
[2928] | 420 | Vector<uInt> skycalList(skytable_.size());
|
---|
[2720] | 421 | uInt numSkyCal = 0;
|
---|
[2735] | 422 |
|
---|
[2720] | 423 | // list of apply tables for Tsys calibration
|
---|
| 424 | for (uInt i = 0 ; i < skytable_.size(); i++) {
|
---|
| 425 | STCalEnum::CalType caltype = STApplyTable::getCalType(skytable_[i]);
|
---|
| 426 | if (caltype == caltype_) {
|
---|
| 427 | skycalList[numSkyCal] = i;
|
---|
| 428 | numSkyCal++;
|
---|
| 429 | }
|
---|
| 430 | }
|
---|
[2928] | 431 | skycalList.resize(numSkyCal, True);
|
---|
[2720] | 432 |
|
---|
| 433 |
|
---|
| 434 | vector<string> cols( 3 ) ;
|
---|
| 435 | cols[0] = "BEAMNO" ;
|
---|
| 436 | cols[1] = "POLNO" ;
|
---|
| 437 | cols[2] = "IFNO" ;
|
---|
[2916] | 438 | CountedPtr<STIdxIter2> iter = new STIdxIter2(work_, cols) ;
|
---|
[2925] | 439 | double start = mathutil::gettimeofday_sec();
|
---|
| 440 | os_ << LogIO::DEBUGGING << "start iterative doapply: " << start << LogIO::POST;
|
---|
[2720] | 441 | while (!iter->pastEnd()) {
|
---|
[2916] | 442 | Record ids = iter->currentValue();
|
---|
[2720] | 443 | Vector<uInt> rows = iter->getRows(SHARE);
|
---|
| 444 | if (rows.nelements() > 0)
|
---|
[2916] | 445 | doapply(ids.asuInt("BEAMNO"), ids.asuInt("IFNO"), ids.asuInt("POLNO"), rows, skycalList, filltsys);
|
---|
[2720] | 446 | iter->next();
|
---|
| 447 | }
|
---|
[2925] | 448 | double end = mathutil::gettimeofday_sec();
|
---|
| 449 | os_ << LogIO::DEBUGGING << "end iterative doapply: " << end << LogIO::POST;
|
---|
| 450 | os_ << LogIO::DEBUGGING << "elapsed time for doapply: " << end - start << " sec" << LogIO::POST;
|
---|
[2720] | 451 |
|
---|
| 452 | target_->unsetSelection();
|
---|
| 453 | }
|
---|
| 454 |
|
---|
| 455 | void STApplyCal::doapply(uInt beamno, uInt ifno, uInt polno,
|
---|
| 456 | Vector<uInt> &rows,
|
---|
[2742] | 457 | Vector<uInt> &skylist,
|
---|
| 458 | Bool filltsys)
|
---|
[2720] | 459 | {
|
---|
[2735] | 460 | os_.origin(LogOrigin("STApplyCal","doapply",WHERE));
|
---|
[2720] | 461 | Bool doTsys = doTsys_;
|
---|
| 462 |
|
---|
| 463 | STSelector sel;
|
---|
| 464 | vector<int> id(1);
|
---|
| 465 | id[0] = beamno;
|
---|
| 466 | sel.setBeams(id);
|
---|
| 467 | id[0] = ifno;
|
---|
| 468 | sel.setIFs(id);
|
---|
| 469 | id[0] = polno;
|
---|
| 470 | sel.setPolarizations(id);
|
---|
| 471 |
|
---|
| 472 | // apply selection to apply tables
|
---|
[2964] | 473 | uInt nrowSkyTotal = 0;
|
---|
| 474 | uInt nrowTsysTotal = 0;
|
---|
[2720] | 475 | for (uInt i = 0; i < skylist.nelements(); i++) {
|
---|
| 476 | skytable_[skylist[i]]->setSelection(sel);
|
---|
[2964] | 477 | nrowSkyTotal += skytable_[skylist[i]]->nrow();
|
---|
| 478 | os_ << "nrowSkyTotal=" << nrowSkyTotal << LogIO::POST;
|
---|
[2720] | 479 | }
|
---|
[2806] | 480 |
|
---|
| 481 | // Skip IFNO without sky data
|
---|
[3021] | 482 | if (nrowSkyTotal == 0) {
|
---|
| 483 | if (skytable_.size() > 0) {
|
---|
| 484 | os_ << LogIO::WARN << "No data in sky caltable. Completely flag Beam " << beamno << " Spw " << ifno << " Pol " << polno << LogIO::POST;
|
---|
| 485 | // Given sky tables are all empty
|
---|
| 486 | // So, flag all data
|
---|
| 487 | flagSpectra(work_->table(), rows);
|
---|
| 488 | }
|
---|
[2806] | 489 | return;
|
---|
[3021] | 490 | }
|
---|
[2806] | 491 |
|
---|
[2720] | 492 | uInt nchanTsys = 0;
|
---|
| 493 | Vector<Double> ftsys;
|
---|
| 494 | uInt tsysifno = getIFForTsys(ifno);
|
---|
[3021] | 495 | Bool onlyInvalidTsys = False;
|
---|
[2758] | 496 | os_ << "tsysifno=" << (Int)tsysifno << LogIO::POST;
|
---|
[2720] | 497 | if (tsystable_.size() == 0) {
|
---|
| 498 | os_.origin(LogOrigin("STApplyTable", "doapply", WHERE));
|
---|
| 499 | os_ << "No Tsys tables are given. Skip Tsys calibratoin." << LogIO::POST;
|
---|
| 500 | doTsys = False;
|
---|
| 501 | }
|
---|
| 502 | else if (tsysifno == (uInt)-1) {
|
---|
| 503 | os_.origin(LogOrigin("STApplyTable", "doapply", WHERE));
|
---|
| 504 | os_ << "No corresponding Tsys for IFNO " << ifno << ". Skip Tsys calibration" << LogIO::POST;
|
---|
| 505 | doTsys = False;
|
---|
| 506 | }
|
---|
| 507 | else {
|
---|
| 508 | id[0] = (int)tsysifno;
|
---|
| 509 | sel.setIFs(id);
|
---|
| 510 | for (uInt i = 0; i < tsystable_.size() ; i++) {
|
---|
| 511 | tsystable_[i]->setSelection(sel);
|
---|
[2848] | 512 | uInt nrowThisTsys = tsystable_[i]->nrow();
|
---|
[2964] | 513 | nrowTsysTotal += nrowThisTsys;
|
---|
[2963] | 514 | if (nrowThisTsys > 0 && nchanTsys == 0) {
|
---|
[2848] | 515 | nchanTsys = tsystable_[i]->nchan(tsysifno);
|
---|
| 516 | ftsys = tsystable_[i]->getBaseFrequency(0);
|
---|
| 517 | }
|
---|
[2720] | 518 | }
|
---|
[3021] | 519 | if (nrowTsysTotal == 0) {
|
---|
| 520 | os_ << "No valid Tsys measurement. for Beam " << beamno << " Spw " << ifno << " Pol " << polno << ". Skip Tsys calibration." << LogIO::POST;
|
---|
| 521 | doTsys = False;
|
---|
| 522 | onlyInvalidTsys = True;
|
---|
| 523 | }
|
---|
[2720] | 524 | }
|
---|
| 525 |
|
---|
| 526 | uInt nchanSp = skytable_[skylist[0]]->nchan(ifno);
|
---|
[2964] | 527 | uInt nrowSky = nrowSkyTotal;
|
---|
| 528 | Vector<Double> timeSky;
|
---|
| 529 | Matrix<Float> spoff;
|
---|
| 530 | Matrix<uChar> flagoff;
|
---|
| 531 | SkyTableAccessor::GetSortedData(skytable_, skylist,
|
---|
| 532 | nrowSkyTotal, nchanSp,
|
---|
| 533 | timeSky, spoff, flagoff);
|
---|
[3021] | 534 | if (allNE(flagoff, (uChar)0)) {
|
---|
| 535 | os_ << LogIO::WARN << "No valid sky data in sky caltable. Completely flag Beam " << beamno << " Spw " << ifno << " Pol " << polno << LogIO::POST;
|
---|
| 536 | // Given sky tables are all invalid
|
---|
| 537 | // So, flag all data
|
---|
| 538 | flagSpectra(work_->table(), rows);
|
---|
| 539 | }
|
---|
[2964] | 540 | nrowSky = timeSky.nelements();
|
---|
[2720] | 541 |
|
---|
[2964] | 542 | uInt nrowTsys = nrowTsysTotal;
|
---|
| 543 | Vector<Double> timeTsys;
|
---|
| 544 | Matrix<Float> tsys;
|
---|
| 545 | Matrix<uChar> flagtsys;
|
---|
[2720] | 546 | if (doTsys) {
|
---|
[2758] | 547 | //os_ << "doTsys" << LogIO::POST;
|
---|
[2964] | 548 | Vector<uInt> tsyslist(tsystable_.size());
|
---|
| 549 | indgen(tsyslist);
|
---|
| 550 | TsysTableAccessor::GetSortedData(tsystable_, tsyslist,
|
---|
| 551 | nrowTsysTotal, nchanTsys,
|
---|
| 552 | timeTsys, tsys, flagtsys);
|
---|
| 553 | nrowTsys = timeTsys.nelements();
|
---|
[3020] | 554 |
|
---|
| 555 | if (allNE(flagtsys, (uChar)0)) {
|
---|
[3021] | 556 | os_ << LogIO::WARN << "No valid Tsys measurement for Beam " << beamno << " Spw " << ifno << " Pol " << polno << ". Skip Tsys calibration." << LogIO::POST;
|
---|
[3020] | 557 | doTsys = False;
|
---|
[3021] | 558 | onlyInvalidTsys = True;
|
---|
[3020] | 559 | }
|
---|
[2720] | 560 | }
|
---|
| 561 |
|
---|
| 562 | Table tab = work_->table();
|
---|
| 563 | ArrayColumn<Float> spCol(tab, "SPECTRA");
|
---|
[2960] | 564 | ArrayColumn<uChar> flCol(tab, "FLAGTRA");
|
---|
[2735] | 565 | ArrayColumn<Float> tsysCol(tab, "TSYS");
|
---|
[2720] | 566 | ScalarColumn<Double> timeCol(tab, "TIME");
|
---|
[3021] | 567 | ScalarColumn<uInt> frCol(tab, "FLAGROW");
|
---|
[2925] | 568 |
|
---|
| 569 | // Array for scaling factor (aka Tsys)
|
---|
[2928] | 570 | Vector<Float> iTsys(IPosition(1, nchanSp), new Float[nchanSp], TAKE_OVER);
|
---|
| 571 | // Array for Tsys interpolation
|
---|
| 572 | // This is empty array and is never referenced if doTsys == false
|
---|
| 573 | // (i.e. nchanTsys == 0)
|
---|
| 574 | Vector<Float> iTsysT(IPosition(1, nchanTsys), new Float[nchanTsys], TAKE_OVER);
|
---|
| 575 |
|
---|
| 576 | // Array for interpolated off spectrum
|
---|
| 577 | Vector<Float> iOff(IPosition(1, nchanSp), new Float[nchanSp], TAKE_OVER);
|
---|
[2963] | 578 |
|
---|
| 579 | // working array for interpolation with flags
|
---|
[2964] | 580 | uInt arraySize = max(max(nrowTsys, nchanTsys), nrowSky);
|
---|
[2963] | 581 | Vector<Double> xwork(IPosition(1, arraySize), new Double[arraySize], TAKE_OVER);
|
---|
| 582 | Vector<Float> ywork(IPosition(1, arraySize), new Float[arraySize], TAKE_OVER);
|
---|
| 583 | Vector<uChar> fwork(IPosition(1, nchanTsys), new uChar[nchanTsys], TAKE_OVER);
|
---|
[2965] | 584 |
|
---|
| 585 | // data array
|
---|
| 586 | Vector<Float> on(IPosition(1, nchanSp), new Float[nchanSp], TAKE_OVER);
|
---|
| 587 | Vector<uChar> flag(on.shape(), new uChar[on.shape().product()], TAKE_OVER);
|
---|
[2925] | 588 |
|
---|
[2720] | 589 | for (uInt i = 0; i < rows.nelements(); i++) {
|
---|
[2758] | 590 | //os_ << "start i = " << i << " (row = " << rows[i] << ")" << LogIO::POST;
|
---|
[2720] | 591 | uInt irow = rows[i];
|
---|
| 592 |
|
---|
| 593 | // target spectral data
|
---|
[2965] | 594 | spCol.get(irow, on);
|
---|
| 595 | flCol.get(irow, flag);
|
---|
[3021] | 596 | uInt flagrow = frCol(irow);
|
---|
[2862] | 597 | //os_ << "on=" << on[0] << LogIO::POST;
|
---|
[2720] | 598 | calibrator_->setSource(on);
|
---|
| 599 |
|
---|
| 600 | // interpolation
|
---|
[2733] | 601 | Double t0 = timeCol(irow);
|
---|
[2963] | 602 | Double *xwork_p = xwork.data();
|
---|
| 603 | Float *ywork_p = ywork.data();
|
---|
[2965] | 604 | SkyInterpolationHelper::Interpolate(t0, nrowSky, nchanSp,
|
---|
| 605 | timeSky.data(), spoff.data(),
|
---|
| 606 | flagoff.data(), &(*interpolatorS_),
|
---|
| 607 | xwork_p, ywork_p,
|
---|
| 608 | iOff.data(), flag.data());
|
---|
[2720] | 609 | calibrator_->setReference(iOff);
|
---|
| 610 |
|
---|
| 611 | if (doTsys) {
|
---|
| 612 | // Tsys correction
|
---|
[2963] | 613 | // interpolation on time axis
|
---|
[2965] | 614 | TsysInterpolationHelper::Interpolate(t0, nrowTsys, nchanTsys,
|
---|
| 615 | timeTsys.data(), tsys.data(),
|
---|
| 616 | flagtsys.data(), &(*interpolatorT_),
|
---|
| 617 | xwork_p, ywork_p,
|
---|
| 618 | iTsysT.data(), fwork.data());
|
---|
[2963] | 619 | uChar *fwork_p = fwork.data();
|
---|
[2720] | 620 | if (nchanSp == 1) {
|
---|
| 621 | // take average
|
---|
| 622 | iTsys[0] = mean(iTsysT);
|
---|
| 623 | }
|
---|
| 624 | else {
|
---|
| 625 | // interpolation on frequency axis
|
---|
| 626 | Vector<Double> fsp = getBaseFrequency(rows[i]);
|
---|
[2965] | 627 | uInt wnchan = setupWorkingData(nchanTsys, ftsys.data(), iTsysT.data(),
|
---|
| 628 | fwork_p, xwork_p, ywork_p);
|
---|
[3020] | 629 | assert(wnchan > 0);
|
---|
| 630 | if (wnchan == 0) {
|
---|
| 631 | throw AipsError("No valid Tsys measurements.");
|
---|
| 632 | }
|
---|
[2963] | 633 | interpolatorF_->setData(xwork_p, ywork_p, wnchan);
|
---|
[3020] | 634 | for (uInt ichan = 0; ichan < nchanSp; ichan++) {
|
---|
[2733] | 635 | iTsys[ichan] = interpolatorF_->interpolate(fsp[ichan]);
|
---|
[2720] | 636 | }
|
---|
| 637 | }
|
---|
| 638 | }
|
---|
| 639 | else {
|
---|
[2759] | 640 | Vector<Float> tsysInRow = tsysCol(irow);
|
---|
| 641 | if (tsysInRow.nelements() == 1) {
|
---|
| 642 | iTsys = tsysInRow[0];
|
---|
| 643 | }
|
---|
| 644 | else {
|
---|
[2862] | 645 | for (uInt ichan = 0; ichan < tsysInRow.nelements(); ++ichan)
|
---|
[2759] | 646 | iTsys[ichan] = tsysInRow[ichan];
|
---|
| 647 | }
|
---|
[2720] | 648 | }
|
---|
[2862] | 649 | //os_ << "iTsys=" << iTsys[0] << LogIO::POST;
|
---|
[2720] | 650 | calibrator_->setScaler(iTsys);
|
---|
| 651 |
|
---|
| 652 | // do calibration
|
---|
| 653 | calibrator_->calibrate();
|
---|
| 654 |
|
---|
[3021] | 655 | // flag spectrum if no valid Tsys measurement available
|
---|
| 656 | if (onlyInvalidTsys) {
|
---|
| 657 | flagSpectrum(flagrow, flag);
|
---|
| 658 | }
|
---|
| 659 |
|
---|
[2720] | 660 | // update table
|
---|
[2862] | 661 | //os_ << "calibrated=" << calibrator_->getCalibrated()[0] << LogIO::POST;
|
---|
[2720] | 662 | spCol.put(irow, calibrator_->getCalibrated());
|
---|
[2960] | 663 | flCol.put(irow, flag);
|
---|
[3021] | 664 | frCol.put(irow, flagrow);
|
---|
| 665 | if (filltsys && !onlyInvalidTsys)
|
---|
[2742] | 666 | tsysCol.put(irow, iTsys);
|
---|
[2720] | 667 | }
|
---|
| 668 |
|
---|
| 669 |
|
---|
| 670 | // reset selection on apply tables
|
---|
| 671 | for (uInt i = 0; i < skylist.nelements(); i++)
|
---|
| 672 | skytable_[i]->unsetSelection();
|
---|
| 673 | for (uInt i = 0; i < tsystable_.size(); i++)
|
---|
| 674 | tsystable_[i]->unsetSelection();
|
---|
| 675 |
|
---|
| 676 |
|
---|
| 677 | // reset interpolator
|
---|
| 678 | interpolatorS_->reset();
|
---|
| 679 | interpolatorF_->reset();
|
---|
| 680 | interpolatorT_->reset();
|
---|
| 681 | }
|
---|
| 682 |
|
---|
| 683 | uInt STApplyCal::getIFForTsys(uInt to)
|
---|
| 684 | {
|
---|
[3106] | 685 | for (map<casacore::uInt, Vector<uInt> >::iterator i = spwmap_.begin();
|
---|
[2720] | 686 | i != spwmap_.end(); i++) {
|
---|
| 687 | Vector<uInt> tolist = i->second;
|
---|
[2735] | 688 | os_ << "from=" << i->first << ": tolist=" << tolist << LogIO::POST;
|
---|
[2720] | 689 | for (uInt j = 0; j < tolist.nelements(); j++) {
|
---|
| 690 | if (tolist[j] == to)
|
---|
| 691 | return i->first;
|
---|
| 692 | }
|
---|
| 693 | }
|
---|
| 694 | return (uInt)-1;
|
---|
| 695 | }
|
---|
| 696 |
|
---|
| 697 | void STApplyCal::save(const String &name)
|
---|
| 698 | {
|
---|
[2756] | 699 | //assert(!work_.null());
|
---|
| 700 | assert_<AipsError>(!work_.null(),"You have to execute apply method first.");
|
---|
[2720] | 701 |
|
---|
| 702 | work_->setSelection(sel_);
|
---|
| 703 | work_->makePersistent(name);
|
---|
| 704 | work_->unsetSelection();
|
---|
| 705 | }
|
---|
| 706 |
|
---|
| 707 | Vector<Double> STApplyCal::getBaseFrequency(uInt whichrow)
|
---|
| 708 | {
|
---|
[2756] | 709 | //assert(whichrow <= (uInt)work_->nrow());
|
---|
| 710 | assert_<AipsError>(whichrow <= (uInt)work_->nrow(),"row index out of range.");
|
---|
[2720] | 711 | ROTableColumn col(work_->table(), "IFNO");
|
---|
| 712 | uInt ifno = col.asuInt(whichrow);
|
---|
| 713 | col.attach(work_->table(), "FREQ_ID");
|
---|
| 714 | uInt freqid = col.asuInt(whichrow);
|
---|
| 715 | uInt nc = work_->nchan(ifno);
|
---|
| 716 | STFrequencies ftab = work_->frequencies();
|
---|
| 717 | Double rp, rf, inc;
|
---|
| 718 | ftab.getEntry(rp, rf, inc, freqid);
|
---|
| 719 | Vector<Double> r(nc);
|
---|
| 720 | indgen(r, rf-rp*inc, inc);
|
---|
| 721 | return r;
|
---|
| 722 | }
|
---|
| 723 |
|
---|
[2727] | 724 | void STApplyCal::initInterpolator()
|
---|
| 725 | {
|
---|
[2735] | 726 | os_.origin(LogOrigin("STApplyCal","initInterpolator",WHERE));
|
---|
[2727] | 727 | int order = (order_ > 0) ? order_ : 1;
|
---|
[2735] | 728 | switch (iTime_) {
|
---|
[2727] | 729 | case STCalEnum::NearestInterpolation:
|
---|
| 730 | {
|
---|
| 731 | os_ << "use NearestInterpolator in time axis" << LogIO::POST;
|
---|
[2733] | 732 | interpolatorS_ = new NearestInterpolator1D<Double, Float>();
|
---|
| 733 | interpolatorT_ = new NearestInterpolator1D<Double, Float>();
|
---|
[2727] | 734 | break;
|
---|
| 735 | }
|
---|
| 736 | case STCalEnum::LinearInterpolation:
|
---|
| 737 | {
|
---|
| 738 | os_ << "use BufferedLinearInterpolator in time axis" << LogIO::POST;
|
---|
[2733] | 739 | interpolatorS_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
| 740 | interpolatorT_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
[2727] | 741 | break;
|
---|
| 742 | }
|
---|
| 743 | case STCalEnum::CubicSplineInterpolation:
|
---|
| 744 | {
|
---|
| 745 | os_ << "use CubicSplineInterpolator in time axis" << LogIO::POST;
|
---|
[2733] | 746 | interpolatorS_ = new CubicSplineInterpolator1D<Double, Float>();
|
---|
| 747 | interpolatorT_ = new CubicSplineInterpolator1D<Double, Float>();
|
---|
[2727] | 748 | break;
|
---|
| 749 | }
|
---|
| 750 | case STCalEnum::PolynomialInterpolation:
|
---|
| 751 | {
|
---|
| 752 | os_ << "use PolynomialInterpolator in time axis" << LogIO::POST;
|
---|
| 753 | if (order == 0) {
|
---|
[2733] | 754 | interpolatorS_ = new NearestInterpolator1D<Double, Float>();
|
---|
| 755 | interpolatorT_ = new NearestInterpolator1D<Double, Float>();
|
---|
[2727] | 756 | }
|
---|
| 757 | else {
|
---|
[2733] | 758 | interpolatorS_ = new PolynomialInterpolator1D<Double, Float>();
|
---|
| 759 | interpolatorT_ = new PolynomialInterpolator1D<Double, Float>();
|
---|
[2727] | 760 | interpolatorS_->setOrder(order);
|
---|
| 761 | interpolatorT_->setOrder(order);
|
---|
| 762 | }
|
---|
| 763 | break;
|
---|
| 764 | }
|
---|
| 765 | default:
|
---|
| 766 | {
|
---|
| 767 | os_ << "use BufferedLinearInterpolator in time axis" << LogIO::POST;
|
---|
[2733] | 768 | interpolatorS_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
| 769 | interpolatorT_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
[2727] | 770 | break;
|
---|
| 771 | }
|
---|
| 772 | }
|
---|
| 773 |
|
---|
[2735] | 774 | switch (iFreq_) {
|
---|
[2727] | 775 | case STCalEnum::NearestInterpolation:
|
---|
| 776 | {
|
---|
| 777 | os_ << "use NearestInterpolator in frequency axis" << LogIO::POST;
|
---|
[2733] | 778 | interpolatorF_ = new NearestInterpolator1D<Double, Float>();
|
---|
[2727] | 779 | break;
|
---|
| 780 | }
|
---|
| 781 | case STCalEnum::LinearInterpolation:
|
---|
| 782 | {
|
---|
| 783 | os_ << "use BufferedLinearInterpolator in frequency axis" << LogIO::POST;
|
---|
[2733] | 784 | interpolatorF_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
[2727] | 785 | break;
|
---|
| 786 | }
|
---|
| 787 | case STCalEnum::CubicSplineInterpolation:
|
---|
| 788 | {
|
---|
| 789 | os_ << "use CubicSplineInterpolator in frequency axis" << LogIO::POST;
|
---|
[2733] | 790 | interpolatorF_ = new CubicSplineInterpolator1D<Double, Float>();
|
---|
[2727] | 791 | break;
|
---|
| 792 | }
|
---|
| 793 | case STCalEnum::PolynomialInterpolation:
|
---|
| 794 | {
|
---|
| 795 | os_ << "use PolynomialInterpolator in frequency axis" << LogIO::POST;
|
---|
| 796 | if (order == 0) {
|
---|
[2733] | 797 | interpolatorF_ = new NearestInterpolator1D<Double, Float>();
|
---|
[2727] | 798 | }
|
---|
| 799 | else {
|
---|
[2733] | 800 | interpolatorF_ = new PolynomialInterpolator1D<Double, Float>();
|
---|
[2727] | 801 | interpolatorF_->setOrder(order);
|
---|
| 802 | }
|
---|
| 803 | break;
|
---|
| 804 | }
|
---|
| 805 | default:
|
---|
| 806 | {
|
---|
| 807 | os_ << "use LinearInterpolator in frequency axis" << LogIO::POST;
|
---|
[2733] | 808 | interpolatorF_ = new BufferedLinearInterpolator1D<Double, Float>();
|
---|
[2727] | 809 | break;
|
---|
| 810 | }
|
---|
| 811 | }
|
---|
[2720] | 812 | }
|
---|
[2963] | 813 |
|
---|
[2727] | 814 | }
|
---|