1 | //#---------------------------------------------------------------------------
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2 | //# SDPol.cc: Polarimetric functionality
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3 | //#---------------------------------------------------------------------------
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4 | //# Copyright (C) 2004
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5 | //# ATNF
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6 | //#
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7 | //# This program is free software; you can redistribute it and/or modify it
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8 | //# under the terms of the GNU General Public License as published by the Free
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9 | //# Software Foundation; either version 2 of the License, or (at your option)
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10 | //# any later version.
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11 | //#
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12 | //# This program is distributed in the hope that it will be useful, but
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13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
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15 | //# Public License for more details.
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16 | //#
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17 | //# You should have received a copy of the GNU General Public License along
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18 | //# with this program; if not, write to the Free Software Foundation, Inc.,
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19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
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20 | //#
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21 | //# Correspondence concerning this software should be addressed as follows:
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22 | //# Internet email: Malte.Marquarding@csiro.au
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23 | //# Postal address: Malte Marquarding,
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24 | //# Australia Telescope National Facility,
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25 | //# P.O. Box 76,
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26 | //# Epping, NSW, 2121,
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27 | //# AUSTRALIA
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28 | //#
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29 | //# $Id:
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30 | //#---------------------------------------------------------------------------
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31 |
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32 | #include "SDPol.h"
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33 | #include "SDDefs.h"
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34 |
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35 | #include <casa/Arrays/Array.h>
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36 | #include <casa/Arrays/ArrayMath.h>
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37 | #include <casa/Arrays/ArrayLogical.h>
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38 | #include <casa/Containers/Record.h>
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39 | #include <casa/BasicSL/Constants.h>
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40 | #include <casa/BasicSL/String.h>
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41 | #include <casa/Utilities/Assert.h>
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42 |
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43 | #include <tables/Tables/Table.h>
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44 | #include <tables/Tables/ScalarColumn.h>
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45 | #include <tables/Tables/ArrayColumn.h>
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46 | #include <tables/Tables/ColumnDesc.h>
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47 | #include <tables/Tables/TableRecord.h>
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48 | #include <tables/Tables/DataManError.h>
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49 |
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50 |
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51 | using namespace casa;
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52 | using namespace asap;
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53 |
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54 |
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55 |
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56 | SDStokesEngine::SDStokesEngine (const String& outputColumnName,
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57 | const String& inputColumnName)
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58 | : BaseMappedArrayEngine<Float,Float> (outputColumnName, inputColumnName)
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59 | {}
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60 |
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61 |
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62 | SDStokesEngine::SDStokesEngine (const Record& spec)
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63 | : BaseMappedArrayEngine<Float,Float> ()
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64 | {
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65 | if (spec.isDefined("OUTPUTNAME") && spec.isDefined("INPUTNAME")) {
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66 | setNames (spec.asString("OUTPUTNAME"), spec.asString("INPUTNAME"));
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67 | }
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68 | }
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69 |
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70 | SDStokesEngine::SDStokesEngine (const SDStokesEngine& that)
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71 | : BaseMappedArrayEngine<Float,Float> (that)
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72 | {}
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73 |
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74 | SDStokesEngine::~SDStokesEngine()
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75 | {}
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76 |
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77 |
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78 | DataManager* SDStokesEngine::clone() const
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79 | {
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80 | DataManager* dmPtr = new SDStokesEngine (*this);
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81 | return dmPtr;
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82 | }
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83 |
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84 |
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85 | String SDStokesEngine::dataManagerType() const
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86 | {
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87 | return className();
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88 | }
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89 |
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90 | String SDStokesEngine::className()
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91 | {
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92 | return "SDStokesEngine";
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93 | }
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94 |
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95 | String SDStokesEngine::dataManagerName() const
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96 | {
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97 | return sourceName();
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98 | }
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99 |
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100 | Record SDStokesEngine::dataManagerSpec() const
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101 | {
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102 | Record spec;
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103 | spec.define ("OUTPUTNAME", sourceName()); // Ger uses opposite meaning for source/target
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104 | spec.define ("INPUTNAME", targetName());
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105 | return spec;
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106 | }
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107 |
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108 | DataManager* SDStokesEngine::makeObject (const String&,
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109 | const Record& spec)
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110 | {
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111 | DataManager* dmPtr = new SDStokesEngine(spec);
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112 | return dmPtr;
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113 | }
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114 |
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115 |
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116 | void SDStokesEngine::registerClass()
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117 | {
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118 | DataManager::registerCtor (className(), makeObject);
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119 | }
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120 |
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121 |
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122 | void SDStokesEngine::create (uInt initialNrrow)
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123 | {
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124 | BaseMappedArrayEngine<Float,Float>::create (initialNrrow);
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125 | }
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126 |
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127 | void SDStokesEngine::prepare()
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128 | {
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129 | BaseMappedArrayEngine<Float,Float>::prepare();
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130 | }
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131 |
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132 | Bool SDStokesEngine::canAccessArrayColumnCells (Bool& reask) const
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133 | {
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134 | reask = False;
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135 | return True;
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136 | }
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137 |
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138 |
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139 | void SDStokesEngine::getArray (uInt rownr, Array<Float>& output)
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140 | {
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141 | Array<Float> input;
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142 | roColumn().get(rownr, input);
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143 | //
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144 | computeOnGet (output, input);
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145 | }
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146 |
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147 | void SDStokesEngine::putArray (uInt rownr, const Array<Float>& input)
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148 | {
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149 | throw(AipsError("This Virtual Column is not writable"));
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150 | }
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151 |
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152 |
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153 |
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154 |
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155 |
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156 | IPosition SDStokesEngine::shape (uInt rownr)
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157 | {
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158 | IPosition inputShape = roColumn().shape (rownr);
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159 | return findOutputShape(inputShape);
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160 | }
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161 |
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162 |
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163 |
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164 | void SDStokesEngine::computeOnGet(Array<Float>& output,
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165 | const Array<Float>& input)
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166 | //
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167 | // array of shape (nBeam,nIF,nPol,nChan)
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168 | //
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169 | // We use the scaling convention I=(XX+YY)
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170 | //
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171 | {
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172 |
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173 | // Checks
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174 |
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175 | const uInt nDim = input.ndim();
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176 | AlwaysAssert(nDim==4,AipsError);
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177 | AlwaysAssert(output.ndim()==4,AipsError);
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178 | //
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179 | const IPosition inputShape = input.shape();
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180 | const uInt polAxis = asap::PolAxis;
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181 | const uInt nPol = inputShape(polAxis);
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182 | AlwaysAssert(nPol==1 || nPol==2 || nPol==4, AipsError);
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183 |
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184 | // The silly Array slice operator does not give me back
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185 | // a const reference so have to caste it away
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186 |
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187 | Array<Float>& input2 = const_cast<Array<Float>&>(input);
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188 |
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189 | // Slice coordnates
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190 |
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191 | IPosition start(nDim,0);
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192 | IPosition end(input.shape()-1);
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193 |
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194 | // Generate Slices
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195 |
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196 | start(polAxis) = 0;
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197 | end(polAxis) = 0;
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198 | Array<Float> C1 = input2(start,end); // Input : C1
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199 | //
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200 | start(polAxis) = 0;
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201 | end(polAxis) = 0;
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202 | Array<Float> I = output(start,end); // Output : I
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203 | //
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204 | if (nPol==1) {
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205 | I = Float(2.0)*C1;
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206 | return;
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207 | }
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208 | //
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209 | start(polAxis) = 1;
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210 | end(polAxis) = 1;
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211 | Array<Float> C2 = input2(start,end); // Input : C1
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212 | //
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213 | I = C1 + C2;
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214 | if (nPol <= 2) return;
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215 | //
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216 | start(polAxis) = 2;
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217 | end(polAxis) = 2;
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218 | Array<Float> C3 = input2(start,end); // Input : C3
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219 | //
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220 | start(polAxis) = 3;
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221 | end(polAxis) = 3;
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222 | Array<Float> C4 = input2(start,end); // Input : C4
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223 | //
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224 | start(polAxis) = 1;
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225 | end(polAxis) = 1;
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226 | Array<Float> Q = output(start,end); // Output : Q
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227 | Q = C1 - C2;
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228 | //
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229 | start(polAxis) = 2;
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230 | end(polAxis) = 2;
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231 | Array<Float> U = output(start,end); // Output : U
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232 | U = Float(2.0)*C3;
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233 | //
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234 | start(polAxis) = 3;
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235 | end(polAxis) = 3;
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236 | Array<Float> V = output(start,end); // Output : V
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237 | V = Float(2.0)*C4;
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238 | }
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239 |
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240 |
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241 |
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242 | IPosition SDStokesEngine::findOutputShape (const IPosition& inputShape) const
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243 | {
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244 | uInt axis = 2;
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245 | uInt nPol = inputShape(axis);
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246 | IPosition outputShape = inputShape;
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247 | if (nPol==1) {
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248 | outputShape(axis) = 1; // XX -> I
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249 | } else if (nPol==2) {
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250 | outputShape(axis) = 1; // XX YY -> I
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251 | } else if (nPol==4) {
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252 | outputShape(axis) = 4; // XX YY R(XY) I(XY) -> I Q U V
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253 | }
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254 | return outputShape;
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255 | }
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256 |
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257 |
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258 |
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259 | // SDPolUtil
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260 |
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261 | Array<Float> SDPolUtil::polarizedIntensity (const Array<Float>& Q,
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262 | const Array<Float>& U)
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263 | {
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264 | Array<Float> t1 = pow(Q,Double(2.0));
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265 | Array<Float> t2 = pow(U,Double(2.0));
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266 | return sqrt(t1+t2);
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267 | }
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268 |
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269 |
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270 | Array<Float> SDPolUtil::positionAngle (const Array<Float>& Q,
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271 | const Array<Float>& U)
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272 | {
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273 | return Float(180.0/C::pi/2.0)*atan2(Q,U); // Degrees
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274 | }
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275 |
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276 |
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277 | void SDPolUtil::rotateXYPhase (Array<Float>& C3,
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278 | Array<Float>& C4,
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279 | Float phase)
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280 | {
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281 | Float cosVal = cos(C::pi/180.0*phase);
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282 | Float sinVal = sin(C::pi/180.0*phase);
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283 | //
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284 | C3 = C3*cosVal - C4*sinVal;
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285 | C4 = C3*sinVal + C4*cosVal;
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286 | }
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287 |
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288 |
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289 |
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290 | Array<Float> SDPolUtil::getStokesSlice (Array<Float>& in, const IPosition& start,
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291 | const IPosition& end, const String& stokes)
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292 | {
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293 | IPosition s(start);
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294 | IPosition e(end);
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295 | //
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296 | if (stokes=="I") {
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297 | s(asap::PolAxis) = 0;
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298 | e(asap::PolAxis) = 0;
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299 | } else if (stokes=="Q") {
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300 | s(asap::PolAxis) = 1;
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301 | e(asap::PolAxis) = 1;
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302 | } else if (stokes=="U") {
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303 | s(asap::PolAxis) = 2;
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304 | e(asap::PolAxis) = 2;
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305 | } else if (stokes=="V") {
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306 | s(asap::PolAxis) = 3;
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307 | e(asap::PolAxis) = 3;
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308 | }
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309 | //
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310 | return in(s,e);
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311 | }
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312 |
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313 |
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314 | Array<Float> SDPolUtil::circularPolarizationFromStokes (Array<Float>& I,
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315 | Array<Float>& V,
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316 | Bool doRR)
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317 | {
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318 | if (doRR) {
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319 | return Float(0.5)*(I+V);
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320 | } else {
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321 | return Float(0.5)*(I-V);
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322 | }
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323 | }
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324 |
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325 | Array<Bool> SDPolUtil::stokesMask (Array<Bool> rawFlags,
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326 | Bool doLinear)
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327 | //
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328 | // Generate mask for each Stokes parameter from the
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329 | // raw flags. This is a lot of computational work and may
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330 | // not be worth the effort.
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331 | //
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332 | {
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333 | IPosition shapeIn = rawFlags.shape();
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334 | uInt nPol = shapeIn(asap::PolAxis);
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335 | const uInt nDim = shapeIn.nelements();
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336 | Array<Bool> stokesFlags;
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337 | //
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338 | IPosition start(nDim,0);
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339 | IPosition end(shapeIn-1);
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340 | IPosition shapeOut = shapeIn;
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341 | //
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342 | if (doLinear) {
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343 | if (nPol==1) {
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344 | stokesFlags.resize(shapeOut);
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345 | stokesFlags = rawFlags;
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346 | } else if (nPol==2 || nPol==4) {
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347 |
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348 | // Set shape of output array
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349 |
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350 | if (nPol==2) {
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351 | shapeOut(asap::PolAxis) = 1;
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352 | } else {
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353 | shapeOut(asap::PolAxis) = 4;
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354 | }
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355 | stokesFlags.resize(shapeOut);
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356 |
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357 | // Get reference slices and assign/compute
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358 |
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359 | start(asap::PolAxis) = 0;
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360 | end(asap::PolAxis) = 0;
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361 | Array<Bool> M1In = rawFlags(start,end);
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362 | //
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363 | start(asap::PolAxis) = 1;
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364 | end(asap::PolAxis) = 1;
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365 | Array<Bool> M2In = rawFlags(start,end);
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366 | //
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367 | start(asap::PolAxis) = 0;
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368 | end(asap::PolAxis) = 0;
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369 | Array<Bool> M1Out = stokesFlags(start,end);
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370 | M1Out = M1In && M2In; // I
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371 | //
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372 | if (nPol==4) {
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373 | start(asap::PolAxis) = 2;
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374 | end(asap::PolAxis) = 2;
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375 | Array<Bool> M3In = rawFlags(start,end);
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376 | //
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377 | start(asap::PolAxis) = 3;
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378 | end(asap::PolAxis) = 3;
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379 | Array<Bool> M4In = rawFlags(start,end);
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380 | //
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381 | start(asap::PolAxis) = 1;
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382 | end(asap::PolAxis) = 1;
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383 | Array<Bool> M2Out = stokesFlags(start,end);
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384 | M2Out = M1Out; // Q
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385 | //
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386 | start(asap::PolAxis) = 2;
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387 | end(asap::PolAxis) = 2;
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388 | Array<Bool> M3Out = stokesFlags(start,end);
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389 | M3Out = M3In; // U
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390 | //
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391 | start(asap::PolAxis) = 3;
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392 | end(asap::PolAxis) = 3;
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393 | Array<Bool> M4Out = stokesFlags(start,end);
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394 | M4Out = M4In; // V
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395 | }
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396 | } else {
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397 | throw(AipsError("Can only handle 1,2 or 4 polarizations"));
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398 | }
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399 | } else {
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400 | throw (AipsError("Only implemented for Linear polarizations"));
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401 | }
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402 | //
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403 | return stokesFlags;
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404 | }
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