source: trunk/src/SDMemTable.h@ 307

Last change on this file since 307 was 306, checked in by kil064, 20 years ago

implement function getSDFreqTable which was empty before

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1//#---------------------------------------------------------------------------
2//# SDMemTable.h: A MemoryTable container for single dish integrations
3//#---------------------------------------------------------------------------
4//# Copyright (C) 2004
5//# ATNF
6//#
7//# This program is free software; you can redistribute it and/or modify it
8//# under the terms of the GNU General Public License as published by the Free
9//# Software Foundation; either version 2 of the License, or (at your option)
10//# any later version.
11//#
12//# This program is distributed in the hope that it will be useful, but
13//# WITHOUT ANY WARRANTY; without even the implied warranty of
14//# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
15//# Public License for more details.
16//#
17//# You should have received a copy of the GNU General Public License along
18//# with this program; if not, write to the Free Software Foundation, Inc.,
19//# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
20//#
21//# Correspondence concerning this software should be addressed as follows:
22//# Internet email: Malte.Marquarding@csiro.au
23//# Postal address: Malte Marquarding,
24//# Australia Telescope National Facility,
25//# P.O. Box 76,
26//# Epping, NSW, 2121,
27//# AUSTRALIA
28//#
29//# $Id:
30//#---------------------------------------------------------------------------
31#ifndef SDMEMTABLE_H
32#define SDMEMTABLE_H
33
34// STL
35#include <string>
36#include <vector>
37// AIPS++
38 #include <casa/aips.h>
39#include <casa/BasicSL/String.h>
40#include <tables/Tables/Table.h>
41#include <casa/Arrays/MaskedArray.h>
42#include "SDDefs.h"
43
44#include <coordinates/Coordinates/SpectralCoordinate.h>
45
46namespace asap {
47
48class SDContainer;
49class SDHeader;
50class SDFrequencyTable;
51
52
53class SDMemTable {
54public:
55 // create a new (empty) SDMemTable
56 SDMemTable();
57 // create a SDMemTable from an (aips++) table on disk
58 SDMemTable(const std::string& name);
59
60 // Copy Construct a SDMemTable, if clear==True only header and
61 // skeleton are copied, otherwise the whole table is copied.
62 SDMemTable(const SDMemTable& other, casa::Bool clear=casa::False);
63
64 // Copy Construct (copy semantics) a SDMemTable, give a scanid constraint
65 // see also getScan()
66 SDMemTable(const casa::Table& tab, const std::string& expr);
67
68 // Assignment operator (copy semantics)
69 SDMemTable &operator=(const SDMemTable& other);
70
71 virtual ~SDMemTable();
72
73 // put data from meta conatiner into the table
74 bool putSDContainer(const SDContainer& sdc);
75 bool putSDHeader(const SDHeader& sdh);
76 bool putSDFreqTable(const SDFrequencyTable& sdft);
77
78 //get the data wrapped up in a meta container
79 SDContainer getSDContainer(casa::uInt whichRow=0) const;
80 SDHeader getSDHeader() const;
81
82 // Get SD Frequency table.
83 SDFrequencyTable getSDFreqTable() const;
84
85 // get spectrum,mask and tsys for the given row, at the selected
86 // cursor - all as stl vectors
87 virtual std::vector<float> getSpectrum(casa::Int whichRow=0) const;
88 virtual std::vector<bool> getMask(casa::Int whichRow=0) const;
89
90 virtual casa::Float getTsys(casa::Int whichRow=0) const;
91 // get all as aips++ Vectors
92 virtual void getSpectrum(casa::Vector<casa::Float>& spectrum,
93 casa::Int whichRow=0) const;
94
95 //virtual void getMask(Vector<Bool>& mask,Int whichRow=0) const;
96 std::vector<double> getRestFreqs() const;
97
98 // get info for current row
99 // if whichRow == -1 the Header time is given
100 std::string getTime(casa::Int whichRow=0,
101 casa::Bool showDate=casa::False) const ;
102 casa::MEpoch getEpoch(casa::Int whichRow=0) const;
103 casa::MDirection getDirection(casa::Int whichRow=0,
104 casa::Bool refBeam=casa::False) const;
105//
106 std::string getSourceName(casa::Int whichRow=0) const;
107 double getInterval(casa::Int whichRow=0) const;
108
109 virtual void setSpectrum(std::vector<float> spectrum, int whichRow=0);
110 virtual void setRestFreqs(std::vector<double> freqs,
111 const std::string& theunit);
112 virtual void setCoordInfo(std::vector<string> theinfo);
113
114// Get/Set flux unit
115 std::string getFluxUnit() const;
116 void setFluxUnit (const std::string& unit);
117
118// Set Instrument
119 void setInstrument (const std::string& instrument);
120
121 // set the current value
122 virtual bool setIF(casa::Int whichIF=0);
123 virtual bool setBeam(casa::Int whichBeam=0);
124 virtual bool setPol(casa::Int whichPol=0);
125
126 // REset cursor to 0
127 virtual void resetCursor();
128
129 //sets the user mask applied to all spectra
130 virtual bool setMask(std::vector<int> whichChans);
131 // Hard flags the current spectrum, not reversible
132 virtual void flag(int whichRow);
133
134 // return the currently selected values
135 virtual casa::Int getIF() const { return IFSel_; }
136 virtual casa::Int getBeam() const { return beamSel_; }
137 virtual casa::Int getPol() const { return polSel_; }
138
139 // returns unit, conversion frame, doppler, base-frame
140 virtual std::vector<std::string> getCoordInfo() const;
141
142 // number of scans in table
143 virtual casa::Int nScan() const;
144
145 // get a summary of the table
146 virtual std::string summary() const;
147
148 std::vector<std::string> history(int whichRow=0) const;
149 bool appendHistory(const std::string& hist, int whichRow=0);
150 // write to disk as aips++ table
151 void makePersistent(const std::string& filename);
152
153 // get a new SDMemTable containing all rows with the same give SCANID
154 SDMemTable getScan(casa::Int scanID) const;
155 SDMemTable getSource(const std::string& source) const;
156
157 const casa::TableRecord& getHeader() const {return table_.keywordSet();}
158 // get a handle to the "raw" aips++ table
159 const casa::Table& table() const { return table_; }
160
161 // return the number of values
162 casa::Int nBeam() const;
163 casa::Int nIF() const;
164 casa::Int nPol() const;
165 casa::Int nChan() const;
166
167 // return the number of rows (integrations) in the table
168 casa::Int nRow() const { return table_.nrow(); }
169
170 // return a row as a Masked array, internally converting uChar flags
171 // to bool mask
172 casa::MaskedArray<casa::Float> rowAsMaskedArray(casa::uInt whichRow,
173 casa::Bool useSelection =
174 casa::False) const;
175
176 // Return SC, setting only the basic construction state (i.e.
177 // no conversion or velocity or rest frequency state).
178 // Specify the index of the FreqID you want
179 casa::SpectralCoordinate getSpectralCoordinate(casa::uInt whichIdx) const;
180
181 // Return SC. Set velocity conversion state (unit,doppler),
182 // set rest frequencies. If row number given (>-0), also set
183 // frame conversion layer (needs direction & time which require row)
184 casa::SpectralCoordinate getSpectralCoordinate(casa::uInt whichIdx, casa::uInt row) const;
185
186 // Set just the reference value, pixel and increment into the table
187 // No other state is extracted.
188 casa::Bool setCoordinate(const casa::SpectralCoordinate& speccord,
189 casa::uInt whichIdx);
190
191 casa::Int nCoordinates() const;
192
193 std::vector<double> getAbcissa(int whichRow=0) const;
194 std::string getAbcissaString(casa::Int whichRow=0) const;
195
196// Get global reference types
197 casa::MDirection::Types getDirectionReference() const;
198 casa::MEpoch::Types getTimeReference() const;
199
200// Get global antenna position
201 casa::MPosition getAntennaPosition() const;
202
203// Helper function to check instrument (antenna) name and give enum
204 static Instrument convertInstrument(const casa::String& instrument,
205 casa::Bool throwIt);
206
207private:
208 // utility func for nice printout
209 casa::String formatSec(casa::Double x) const;
210 casa::String formatDirection(const casa::MDirection& md) const;
211 void setup();
212 // the current cursor into the array
213 casa::Int IFSel_,beamSel_,polSel_;
214 std::vector<bool> chanMask_;
215 // the underlying memory table
216 casa::Table table_;
217};
218
219}// namespace
220#endif
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