source: trunk/src/SDMemTable.h@ 475

//#---------------------------------------------------------------------------
//# SDMemTable.h: A MemoryTable container for single dish integrations
//#---------------------------------------------------------------------------
//# Copyright (C) 2004
//# ATNF
//#
//# This program is free software; you can redistribute it and/or modify it
//# under the terms of the GNU General Public License as published by the Free
//# Software Foundation; either version 2 of the License, or (at your option)
//# any later version.
//#
//# This program is distributed in the hope that it will be useful, but
//# WITHOUT ANY WARRANTY; without even the implied warranty of
//# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General
//# Public License for more details.
//#
//# You should have received a copy of the GNU General Public License along
//# with this program; if not, write to the Free Software Foundation, Inc.,
//# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
//#
//# Correspondence concerning this software should be addressed as follows:
//#        Internet email: Malte.Marquarding@csiro.au
//#        Postal address: Malte Marquarding,
//#                        Australia Telescope National Facility,
//#                        P.O. Box 76,
//#                        Epping, NSW, 2121,
//#                        AUSTRALIA
//#
//# $Id:
//#---------------------------------------------------------------------------
#ifndef SDMEMTABLE_H
#define SDMEMTABLE_H

// STL
#include <string>
#include <vector>
// AIPS++
#include <casa/aips.h>
#include <casa/Arrays/MaskedArray.h>
#include <casa/BasicSL/String.h>
#include <coordinates/Coordinates/SpectralCoordinate.h>
#include <tables/Tables/Table.h>
#include <tables/Tables/ArrayColumn.h>
#include <tables/Tables/ScalarColumn.h>

#include "SDDefs.h"
#include "SDFitTable.h"

namespace asap {
  
class SDContainer;
class SDHeader;
class SDFrequencyTable;
class SDFitTable;



class SDMemTable {
public:
  // create a new (empty) SDMemTable
  SDMemTable();
  // create a SDMemTable from an (aips++) table on disk
  SDMemTable(const std::string& name);

  // Copy Construct a SDMemTable, if clear==True only header and
  // skeleton are copied, otherwise the whole table is copied.
  SDMemTable(const SDMemTable& other, casa::Bool clear=casa::False);

  // Copy Construct (copy semantics) a SDMemTable, give a scanid constraint
  // see also getScan()
  SDMemTable(const casa::Table& tab, const std::string& expr);

  // Assignment operator (copy semantics)  
  SDMemTable &operator=(const SDMemTable& other);
  
  virtual ~SDMemTable();

  // put data from meta conatiner into the table
  bool putSDContainer(const SDContainer& sdc);
  bool putSDHeader(const SDHeader& sdh);
  bool putSDFreqTable(const SDFrequencyTable& sdft);

  //get the data wrapped up in a meta container

  SDContainer getSDContainer(casa::uInt whichRow=0) const;
  SDHeader getSDHeader() const;

  // Get SD Frequency table.  
  SDFrequencyTable getSDFreqTable() const;

  // get spectrum,mask and tsys for the given row, at the selected
  // cursor - all as stl vectors
  virtual std::vector<float> getSpectrum(casa::Int whichRow=0) const;
  virtual std::vector<bool> getMask(casa::Int whichRow=0) const;

  // When we can handle input correlations being either circular or
  // linear, we should probably have functions; getLinear,
  // getCircular, getStokes since one can inter-convert between all
  // three regardless of the input provided there are 4
  // polarizations. For now, we are assuming, if there are 4
  // polarizations, that we have linears.  getSpectrum is then
  // 'getLinear', getStokesSpectrum is 'getStokes' and
  // getCircularSpectrum is 'getCircular'

  // Get specific Stokes at cursor location. One of either I,Q,U,V or I,P,PA,V (doPol=True)
  // (determined by the polSel cursor location 0->3)
  // If the latter, you can add a PA offset (degrees)
  virtual std::vector<float> getStokesSpectrum(casa::Int whichRow=0, 
                                               casa::Bool doPol=casa::False,
                                               casa::Float paOffset=0.0) const;

  // Get RR or LL at cursor location (except not polSel_)
  virtual std::vector<float> getCircularSpectrum(casa::Int whichRow=0, 
                                                 casa::Bool rr=casa::True) const;

  // Get all Stokes at the specified Beam/IF cursor location (ignoring
  // the internal cursor).  -1 means all on that axis.  Really, this function
  // should not be here, and the SDContainer should hold the stokes spectrum
  // as well.  However, because the Stokes column is virtual, and its shape
  // is not the same as nPol(), I have put it here for direct access as needed
  virtual casa::Array<casa::Float> getStokesSpectrum(casa::Int whichRow=0,
                                                     casa::Int iBeam=-1, 
                                                     casa::Int iIF=-1) const;

  // Get Tsys at cursor location
  virtual casa::Float getTsys(casa::Int whichRow=0) const;

  // get all as aips++ Vectors
  virtual void getSpectrum(casa::Vector<casa::Float>& spectrum, 
                           casa::Int whichRow=0) const;
  //virtual void getMask(Vector<Bool>& mask,Int whichRow=0) const;

  // Get rest frequencies
  std::vector<double> getRestFreqs() const;
  
  // get info for current row  
  // if whichRow == -1 the Header time is given
  std::string getTime(casa::Int whichRow=0, 
                      casa::Bool showDate=casa::False) const ;
  casa::MEpoch getEpoch(casa::Int whichRow=0) const; 
  casa::MDirection getDirection(casa::Int whichRow=0,
                                casa::Bool refBeam=casa::False) const; 

  std::string getSourceName(casa::Int whichRow=0) const;
  double getInterval(casa::Int whichRow=0) const;

  virtual void setSpectrum(std::vector<float> spectrum, int whichRow=0);
  virtual void setCoordInfo(std::vector<string> theinfo);

  // Set RestFreqID.  source="" and IF=-1 means select all
  virtual casa::Bool setRestFreqs(const casa::Vector<casa::Double>& restFreqs, 
                                  const casa::String& unit,
                                  const std::vector<std::string>& lines,
                                  const casa::String& source,
                                  casa::Int whichIF=-1);

  // List lines
  void spectralLines() const;

  // Get/Set flux unit
  std::string getFluxUnit() const;
  void setFluxUnit (const std::string& unit);
  
  // Set Instrument
  void setInstrument (const std::string& instrument);

  // set the current value
  virtual bool setIF(casa::Int whichIF=0);
  virtual bool setBeam(casa::Int whichBeam=0);
  virtual bool setPol(casa::Int whichPol=0);

  // REset cursor to 0
  virtual void resetCursor();

  //sets the user mask applied to all spectra
  virtual bool setMask(std::vector<int> whichChans);
  // Hard flags the current spectrum, not reversible
  virtual void flag(int whichRow);

  // return the currently selected values
  virtual casa::Int getIF() const { return IFSel_; }
  virtual casa::Int getBeam() const { return beamSel_; }
  virtual casa::Int getPol() const { return polSel_; }

  // returns unit, conversion frame, doppler, base-frame
  virtual std::vector<std::string> getCoordInfo() const;

  // number of scans in table
  virtual casa::Int nScan() const;

  // get a summary of the table
  virtual std::string summary(bool verbose=false) const;

  std::vector<std::string> history(int whichRow=0) const;
  bool appendHistory(const std::string& hist, int whichRow=0);
  // write to disk as aips++ table
  void makePersistent(const std::string& filename);

  // get a new SDMemTable containing all rows with the same give SCANID
  SDMemTable getScan(casa::Int scanID) const;
  SDMemTable getSource(const std::string& source) const;

  const casa::TableRecord& getHeader() const {return table_.keywordSet();}
  // get a handle to the "raw" aips++ table
  const casa::Table& table() const { return table_; }

  // return the number of values
  casa::Int nBeam() const;
  casa::Int nIF() const;
  casa::Int nPol() const;
  casa::Int nChan() const;

  // return the number of rows (integrations) in the table
  casa::Int nRow() const { return table_.nrow(); }

  // return a row as a Masked array, internally converting uChar flags
  // to bool mask
  casa::MaskedArray<casa::Float> rowAsMaskedArray(casa::uInt whichRow, 
                                                  casa::Bool toStokes=casa::False) const;

  // Return SC, setting only the basic construction state (i.e.
  // no conversion or velocity or rest frequency state).
  // Specify the index of the FreqID you want
  casa::SpectralCoordinate getSpectralCoordinate(casa::uInt whichIdx) const;

  // Return SC. Set velocity conversion state (unit,doppler), and
  // rest frequency.  If row number given (>=0), also set
  // frame conversion layer (needs direction & time which require row)
  casa::SpectralCoordinate getSpectralCoordinate(casa::uInt freqID, 
                                                 casa::uInt restFreqID,
                                                 casa::uInt row) const;

  // Set just the reference value, pixel and increment into the table
  // No other state is extracted.
  casa::Bool setCoordinate(const casa::SpectralCoordinate& speccord, 
                           casa::uInt whichIdx);

  casa::Int nCoordinates() const;

  std::vector<double> getAbcissa(int whichRow=0) const;
  std::string getAbcissaString(casa::Int whichRow=0) const;

// Get global reference  types
  casa::MDirection::Types getDirectionReference() const;
  casa::MEpoch::Types getTimeReference() const;

// Get global antenna position
  casa::MPosition getAntennaPosition() const;

// Helper function to check instrument (antenna) name and give enum
  static Instrument convertInstrument(const casa::String& instrument,
                                      casa::Bool throwIt);
  
  bool putSDFitTable(const SDFitTable& sdft);
  SDFitTable getSDFitTable() const;
  SDFitTable getSDFitTable(casa::uInt whichRow) const;

  void addFit(casa::uInt whichRow,
              const casa::Vector<casa::Double>& p, 
              const casa::Vector<casa::Bool>& m,
              const casa::Vector<casa::String>& f, 
              const casa::Vector<casa::Int>& c);

  
private:
  // utility func for nice printout
  casa::String formatSec(casa::Double x) const;
  casa::String formatDirection(const casa::MDirection& md) const;
  std::vector<float> getFloatSpectrum(const casa::Array<casa::Float>& arr) const;
  void setup();
  void attach();
  void renumber();

  // Generate start and end for shape and current cursor selection
  void setCursorSlice(casa::IPosition& start, casa::IPosition& end, 
                      const casa::IPosition& shape) const;

  // the current cursor into the array
  casa::Int IFSel_,beamSel_,polSel_;
  std::vector<bool> chanMask_;
  // the underlying memory table
  casa::Table table_;

  // Cached Columns to avoid reconstructing them for each row get/put
  casa::ScalarColumn<casa::Double> timeCol_, integrCol_;
  casa::ScalarColumn<casa::Float> azCol_, elCol_, paraCol_;
  casa::ScalarColumn<casa::String> srcnCol_, fldnCol_, tcaltCol_;
  casa::ScalarColumn<casa::Int> scanCol_, rbeamCol_;
  casa::ArrayColumn<casa::Float> specCol_, tsCol_, tcalCol_;
  casa::ArrayColumn<casa::Double> dirCol_;
  casa::ArrayColumn<casa::uChar> flagsCol_;
  casa::ArrayColumn<casa::uInt> freqidCol_, restfreqidCol_;
  casa::ArrayColumn<casa::String> histCol_;
  casa::ArrayColumn<casa::Int> fitCol_;
  casa::ROArrayColumn<casa::Float> stokesCol_;
};

}// namespace
#endif