1 | //#---------------------------------------------------------------------------
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2 | //# SDMemTable.cc: A MemoryTable container for single dish integrations
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3 | //#---------------------------------------------------------------------------
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4 | //# Copyright (C) 2004
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5 | //# Malte Marquarding, ATNF
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6 | //#
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7 | //# This program is free software; you can redistribute it and/or modify it
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8 | //# under the terms of the GNU General Public License as published by the Free
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9 | //# Software Foundation; either version 2 of the License, or (at your option)
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10 | //# any later version.
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11 | //#
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12 | //# This program is distributed in the hope that it will be useful, but
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13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
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15 | //# Public License for more details.
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16 | //#
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17 | //# You should have received a copy of the GNU General Public License along
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18 | //# with this program; if not, write to the Free Software Foundation, Inc.,
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19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
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20 | //#
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21 | //# Correspondence concerning this software should be addressed as follows:
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22 | //# Internet email: Malte.Marquarding@csiro.au
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23 | //# Postal address: Malte Marquarding,
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24 | //# Australia Telescope National Facility,
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25 | //# P.O. Box 76,
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26 | //# Epping, NSW, 2121,
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27 | //# AUSTRALIA
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28 | //#
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29 | //# $Id:
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30 | //#---------------------------------------------------------------------------
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31 |
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32 |
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33 | #include <aips/iostream.h>
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34 | #include <aips/iomanip.h>
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35 | #include <aips/Arrays/Array.h>
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36 | #include <aips/Arrays/ArrayMath.h>
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37 | #include <aips/Arrays/MaskArrMath.h>
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38 | #include <aips/Arrays/ArrayLogical.h>
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39 | #include <aips/Arrays/ArrayAccessor.h>
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40 |
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41 | #include <aips/Tables/TableParse.h>
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42 | #include <aips/Tables/TableDesc.h>
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43 | #include <aips/Tables/SetupNewTab.h>
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44 | #include <aips/Tables/ScaColDesc.h>
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45 | #include <aips/Tables/ArrColDesc.h>
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46 |
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47 | #include <aips/Tables/ExprNode.h>
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48 | #include <aips/Tables/ScalarColumn.h>
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49 | #include <aips/Tables/ArrayColumn.h>
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50 | #include <aips/Tables/TableRecord.h>
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51 | #include <aips/Measures/MFrequency.h>
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52 | #include <aips/Quanta/MVTime.h>
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53 |
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54 | #include "SDMemTable.h"
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55 | #include "SDContainer.h"
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56 |
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57 | using namespace atnf_sd;
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58 |
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59 | SDMemTable::SDMemTable() :
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60 | IFSel_(0),
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61 | beamSel_(0),
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62 | polSel_(0) {
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63 | setup();
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64 | }
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65 | SDMemTable::SDMemTable(const std::string& name) :
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66 | IFSel_(0),
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67 | beamSel_(0),
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68 | polSel_(0) {
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69 | Table tab(name);
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70 | table_ = tab.copyToMemoryTable("dummy");
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71 | }
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72 |
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73 | SDMemTable::SDMemTable(const SDMemTable& other, Bool clear) {
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74 | this->IFSel_= other.IFSel_;
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75 | this->beamSel_= other.beamSel_;
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76 | this->polSel_= other.polSel_;
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77 | this->chanMask_ = other.chanMask_;
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78 | this->table_ = other.table_.copyToMemoryTable(String("dummy"));
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79 | // clear all rows()
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80 | if (clear) {
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81 | this->table_.removeRow(this->table_.rowNumbers());
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82 | } else {
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83 | this->IFSel_ = other.IFSel_;
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84 | this->beamSel_ = other.beamSel_;
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85 | this->polSel_ = other.polSel_;
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86 | }
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87 | }
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88 |
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89 | SDMemTable::SDMemTable(const Table& tab, Int scanID) :
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90 | IFSel_(0),
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91 | beamSel_(0),
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92 | polSel_(0) {
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93 | String exprs = String("select * from $1 where SCANID == ")
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94 | +String::toString(scanID);
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95 | //cerr << exprs << endl;
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96 | Table t = tableCommand(exprs,tab);
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97 | table_ = t.copyToMemoryTable("dummy");
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98 | }
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99 |
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100 | SDMemTable::~SDMemTable(){
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101 | //cerr << "goodbye from SDMemTable @ " << this << endl;
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102 | }
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103 |
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104 | SDMemTable SDMemTable::getScan(Int scanID) {
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105 | return SDMemTable(table_, scanID);
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106 | }
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107 |
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108 | void SDMemTable::setup() {
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109 | TableDesc td("", "1", TableDesc::Scratch);
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110 | td.comment() = "A SDMemTable";
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111 | td.addColumn(ScalarColumnDesc<Double>("TIME"));
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112 | td.addColumn(ScalarColumnDesc<String>("SRCNAME"));
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113 | td.addColumn(ArrayColumnDesc<Float>("SPECTRA"));
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114 | td.addColumn(ArrayColumnDesc<uChar>("FLAGTRA"));
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115 | td.addColumn(ArrayColumnDesc<Float>("TSYS"));
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116 | td.addColumn(ScalarColumnDesc<Int>("SCANID"));
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117 | td.addColumn(ScalarColumnDesc<Double>("INTERVAL"));
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118 | td.addColumn(ArrayColumnDesc<uInt>("FREQID"));
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119 | // Now create a new table from the description.
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120 |
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121 | SetupNewTable aNewTab("dummy", td, Table::New);
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122 | table_ = Table(aNewTab, Table::Memory, 0);
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123 | }
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124 |
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125 | std::string SDMemTable::getSourceName(Int whichRow) const {
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126 | ROScalarColumn<String> src(table_, "SRCNAME");
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127 | String name;
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128 | src.get(whichRow, name);
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129 | return name;
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130 | }
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131 |
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132 | std::string SDMemTable::getTime(Int whichRow) const {
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133 | ROScalarColumn<Double> src(table_, "TIME");
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134 | Double tm;
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135 | src.get(whichRow, tm);
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136 | MVTime mvt(tm);
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137 | mvt.setFormat(MVTime::YMD);
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138 | ostringstream oss;
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139 | oss << mvt;
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140 | String str(oss);
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141 | return str;
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142 | }
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143 | double SDMemTable::getInterval(Int whichRow) const {
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144 | ROScalarColumn<Double> src(table_, "INTERVAL");
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145 | Double intval;
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146 | src.get(whichRow, intval);
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147 | return intval;
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148 | }
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149 |
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150 | bool SDMemTable::setIF(Int whichIF) {
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151 | if ( whichIF >= 0 && whichIF < nIF()) {
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152 | IFSel_ = whichIF;
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153 | return true;
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154 | }
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155 | return false;
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156 | }
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157 |
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158 | bool SDMemTable::setBeam(Int whichBeam) {
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159 | if ( whichBeam >= 0 && whichBeam < nBeam()) {
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160 | beamSel_ = whichBeam;
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161 | return true;
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162 | }
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163 | return false;
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164 | }
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165 |
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166 | bool SDMemTable::setPol(Int whichPol) {
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167 | if ( whichPol >= 0 && whichPol < nPol()) {
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168 | polSel_ = whichPol;
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169 | return true;
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170 | }
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171 | return false;
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172 | }
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173 |
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174 | bool SDMemTable::setMask(const std::vector<int>& whichChans) {
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175 | ROArrayColumn<uChar> spec(table_, "FLAGTRA");
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176 |
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177 | std::vector<int>::iterator it;
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178 | uInt n = spec.shape(0)(3);
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179 | chanMask_.resize(n,true);
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180 | for (it = whichChans.begin(); it != whichChans.end(); ++it) {
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181 | if (*it < n)
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182 | chanMask_[*it] = false;
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183 | }
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184 | return true;
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185 | }
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186 |
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187 | std::vector<bool> SDMemTable::getMask(Int whichRow) const {
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188 | std::vector<bool> mask;
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189 | ROArrayColumn<uChar> spec(table_, "FLAGTRA");
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190 | Array<uChar> arr;
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191 | spec.get(whichRow, arr);
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192 | ArrayAccessor<uChar, Axis<0> > aa0(arr);
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193 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
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194 | ArrayAccessor<uChar, Axis<1> > aa1(aa0);
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195 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
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196 | ArrayAccessor<uChar, Axis<2> > aa2(aa1);
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197 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
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198 |
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199 | Bool useUserMask = ( chanMask_.size() == arr.shape()(3) );
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200 |
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201 | std::vector<bool> tmp;
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202 | tmp = chanMask_; // WHY the fxxx do I have to make a copy here
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203 | std::vector<bool>::iterator miter;
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204 | miter = tmp.begin();
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205 |
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206 | for (ArrayAccessor<uChar, Axis<3> > i(aa2); i != i.end(); ++i) {
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207 | bool out =!static_cast<bool>(*i);
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208 | if (useUserMask) {
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209 | out = out && (*miter);
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210 | miter++;
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211 | }
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212 | mask.push_back(out);
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213 | }
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214 | return mask;
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215 | }
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216 | std::vector<float> SDMemTable::getSpectrum(Int whichRow) const {
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217 |
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218 | std::vector<float> spectrum;
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219 | ROArrayColumn<Float> spec(table_, "SPECTRA");
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220 | Array<Float> arr;
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221 | spec.get(whichRow, arr);
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222 | ArrayAccessor<Float, Axis<0> > aa0(arr);
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223 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
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224 | ArrayAccessor<Float, Axis<1> > aa1(aa0);
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225 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
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226 | ArrayAccessor<Float, Axis<2> > aa2(aa1);
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227 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
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228 | for (ArrayAccessor<Float, Axis<3> > i(aa2); i != i.end(); ++i) {
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229 | spectrum.push_back(*i);
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230 | }
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231 | return spectrum;
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232 | }
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233 |
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234 | std::vector<double> SDMemTable::getAbscissa(Int whichRow,
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235 | const std::string& whichUnit,
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236 | double restfreq) {
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237 | std::vector<double> absc(nChan());
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238 | Vector<Double> absc1(nChan());
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239 | indgen(absc1);
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240 | ROArrayColumn<uInt> fid(table_, "FREQID");
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241 | Vector<uInt> v;
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242 | fid.get(whichRow, v);
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243 | uInt specidx = v(IFSel_);
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244 | Unit u;
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245 | if (whichUnit == "") {
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246 | // get unit from table
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247 | } else {
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248 | u = String(whichUnit);
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249 | }
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250 | SpectralCoordinate spc = getCoordinate(specidx);
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251 | if ( u == Unit("km/s") ) {
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252 | if (Double(restfreq) > Double(0.000001)) {
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253 | cerr << "converting to velocities"<< endl;
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254 | spc.setRestFrequency(Double(restfreq));
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255 | spc.setVelocity(u.getName());
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256 | Vector<Double> wrld;
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257 | spc.pixelToVelocity(wrld,absc1);
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258 | std::vector<double>::iterator it;
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259 | uInt i = 0;
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260 | for (it = absc.begin(); it != absc.end(); ++it) {
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261 | (*it) = wrld[i];
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262 | i++;
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263 | }
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264 | }
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265 | } else if (u == Unit("Hz")) {
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266 | Vector<String> wau(1); wau = u.getName();
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267 | spc.setWorldAxisUnits(wau);
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268 | cerr << " converting in frequency" << endl;
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269 | std::vector<double>::iterator it;
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270 | Double tmp;
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271 | uInt i = 0;
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272 | for (it = absc.begin(); it != absc.end(); ++it) {
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273 | spc.toWorld(tmp,absc1[i]);
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274 | (*it) = tmp;
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275 | i++;
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276 | }
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277 | }
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278 | return absc;
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279 | }
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280 |
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281 | void SDMemTable::getSpectrum(Vector<Float>& spectrum, Int whichRow=0) {
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282 | ROArrayColumn<Float> spec(table_, "SPECTRA");
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283 | Array<Float> arr;
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284 | spec.get(whichRow, arr);
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285 | spectrum.resize(arr.shape()(3));
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286 | ArrayAccessor<Float, Axis<0> > aa0(arr);
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287 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
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288 | ArrayAccessor<Float, Axis<1> > aa1(aa0);
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289 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
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290 | ArrayAccessor<Float, Axis<2> > aa2(aa1);
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291 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
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292 |
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293 | ArrayAccessor<Float, Axis<0> > va(spectrum);
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294 | for (ArrayAccessor<Float, Axis<3> > i(aa2); i != i.end(); ++i) {
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295 | (*va) = (*i);
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296 | va++;
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297 | }
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298 | }
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299 |
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300 | void SDMemTable::getMask(Vector<Bool>& mask, Int whichRow=0) const {
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301 | ROArrayColumn<uChar> spec(table_, "FLAGTRA");
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302 | Array<uChar> arr;
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303 | spec.get(whichRow, arr);
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304 | mask.resize(arr.shape()(3));
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305 |
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306 | ArrayAccessor<uChar, Axis<0> > aa0(arr);
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307 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
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308 | ArrayAccessor<uChar, Axis<1> > aa1(aa0);
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309 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
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310 | ArrayAccessor<uChar, Axis<2> > aa2(aa1);
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311 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
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312 |
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313 | Bool useUserMask = ( chanMask_.size() == arr.shape()(3) );
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314 |
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315 | ArrayAccessor<Bool, Axis<0> > va(mask);
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316 | std::vector<bool> tmp;
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317 | tmp = chanMask_; // WHY the fxxx do I have to make a copy here. The
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318 | // iterator should work on chanMask_??
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319 | std::vector<bool>::iterator miter;
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320 | miter = tmp.begin();
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321 |
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322 | for (ArrayAccessor<uChar, Axis<3> > i(aa2); i != i.end(); ++i) {
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323 | bool out =!static_cast<bool>(*i);
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324 | if (useUserMask) {
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325 | out = out && (*miter);
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326 | miter++;
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327 | }
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328 | (*va) = out;
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329 | va++;
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330 | }
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331 | }
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332 |
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333 | MaskedArray<Float> SDMemTable::rowAsMaskedArray(uInt whichRow,
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334 | Bool useSelection) {
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335 | ROArrayColumn<Float> spec(table_, "SPECTRA");
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336 | Array<Float> arr;
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337 | ROArrayColumn<uChar> flag(table_, "FLAGTRA");
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338 | Array<uChar> farr;
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339 | spec.get(whichRow, arr);
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340 | flag.get(whichRow, farr);
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341 | Array<Bool> barr(farr.shape());convertArray(barr, farr);
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342 | MaskedArray<Float> marr;
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343 | if (useSelection) {
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344 | ArrayAccessor<Float, Axis<0> > aa0(arr);
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345 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
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346 | ArrayAccessor<Float, Axis<1> > aa1(aa0);
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347 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
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348 | ArrayAccessor<Float, Axis<2> > aa2(aa1);
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349 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
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350 |
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351 | ArrayAccessor<Bool, Axis<0> > baa0(barr);
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352 | baa0.reset(baa0.begin(uInt(beamSel_)));//go to beam
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353 | ArrayAccessor<Bool, Axis<1> > baa1(baa0);
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354 | baa1.reset(baa1.begin(uInt(IFSel_)));// go to IF
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355 | ArrayAccessor<Bool, Axis<2> > baa2(baa1);
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356 | baa2.reset(baa2.begin(uInt(polSel_)));// go to pol
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357 |
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358 | Vector<Float> a(arr.shape()(3));
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359 | Vector<Bool> b(barr.shape()(3));
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360 | ArrayAccessor<Float, Axis<0> > a0(a);
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361 | ArrayAccessor<Bool, Axis<0> > b0(b);
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362 |
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363 | ArrayAccessor<Bool, Axis<3> > j(baa2);
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364 | for (ArrayAccessor<Float, Axis<3> > i(aa2); i != i.end(); ++i) {
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365 | (*a0) = (*i);
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366 | (*b0) = !(*j);
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367 | j++;
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368 | a0++;
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369 | b0++;
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370 | }
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371 | marr.setData(a,b);
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372 | } else {
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373 | marr.setData(arr,!barr);
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374 | }
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375 | return marr;
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376 | }
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377 |
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378 | Float SDMemTable::getTsys(Int whichRow) const {
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379 | ROArrayColumn<Float> ts(table_, "TSYS");
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380 | Array<Float> arr;
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381 | ts.get(whichRow, arr);
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382 | Float out;
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383 | IPosition ip(arr.shape());
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384 | ip(0) = beamSel_;ip(1) = IFSel_;ip(2) = polSel_;ip(3)=0;
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385 | out = arr(ip);
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386 | return out;
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387 | }
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388 |
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389 | SpectralCoordinate SDMemTable::getCoordinate(uInt whichIdx) const {
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390 |
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391 | Table t = table_.keywordSet().asTable("FREQUENCIES");
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392 | if (whichIdx > t.nrow() ) {
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393 | cerr << "SDMemTable::getCoordinate - whichIdx out of range" << endl;
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394 | return;
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395 | }
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396 | Double rp,rv,inc;
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397 | String rf;
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398 | ROScalarColumn<Double> rpc(t, "REFPIX");
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399 | ROScalarColumn<Double> rvc(t, "REFVAL");
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400 | ROScalarColumn<Double> incc(t, "INCREMENT");
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401 | t.keywordSet().get("REFFRAME",rf);
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402 |
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403 | MFrequency::Types mft;
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404 | if (!MFrequency::getType(mft, rf)) {
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405 | cerr << "Frequency type unknown assuming TOPO" << endl;
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406 | mft = MFrequency::TOPO;
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407 | }
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408 | rpc.get(whichIdx, rp);
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409 | rvc.get(whichIdx, rv);
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410 | incc.get(whichIdx, inc);
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411 | //cerr << "creating speccord from " << whichIdx << ": "
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412 | // << rp <<", " << rv << ", " << inc << ", " << mft <<endl;
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413 | SpectralCoordinate spec(mft,rv,inc,rp);
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414 | return spec;
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415 | }
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416 |
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417 | Bool SDMemTable::setCoordinate(const SpectralCoordinate& speccord,
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418 | uInt whichIdx) {
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419 | Table t = table_.rwKeywordSet().asTable("FREQUENCIES");
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420 | if (whichIdx > t.nrow() ) {
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---|
421 | cerr << "SDMemTable::setCoordinate - whichIdx out of range" << endl;
|
---|
422 | return;
|
---|
423 | }
|
---|
424 | ScalarColumn<Double> rpc(t, "REFPIX");
|
---|
425 | ScalarColumn<Double> rvc(t, "REFVAL");
|
---|
426 | ScalarColumn<Double> incc(t, "INCREMENT");
|
---|
427 |
|
---|
428 | rpc.put(whichIdx, speccord.referencePixel()[0]);
|
---|
429 | rvc.put(whichIdx, speccord.referenceValue()[0]);
|
---|
430 | incc.put(whichIdx, speccord.increment()[0]);
|
---|
431 |
|
---|
432 | return True;
|
---|
433 | }
|
---|
434 |
|
---|
435 |
|
---|
436 | bool SDMemTable::putSDFreqTable(const SDFrequencyTable& sdft) {
|
---|
437 | TableDesc td("", "1", TableDesc::Scratch);
|
---|
438 | td.addColumn(ScalarColumnDesc<Double>("REFPIX"));
|
---|
439 | td.addColumn(ScalarColumnDesc<Double>("REFVAL"));
|
---|
440 | td.addColumn(ScalarColumnDesc<Double>("INCREMENT"));
|
---|
441 | SetupNewTable aNewTab("freqs", td, Table::New);
|
---|
442 | Table aTable (aNewTab, Table::Memory, sdft.length());
|
---|
443 | ScalarColumn<Double> sc0(aTable, "REFPIX");
|
---|
444 | ScalarColumn<Double> sc1(aTable, "REFVAL");
|
---|
445 | ScalarColumn<Double> sc2(aTable, "INCREMENT");
|
---|
446 | for (uInt i=0; i < sdft.length(); ++i) {
|
---|
447 | sc0.put(i,sdft.referencePixel(i));
|
---|
448 | sc1.put(i,sdft.referenceValue(i));
|
---|
449 | sc2.put(i,sdft.increment(i));
|
---|
450 | }
|
---|
451 | aTable.rwKeywordSet().define("REFFRAME", sdft.refFrame());
|
---|
452 | aTable.rwKeywordSet().define("EQUINOX", sdft.equinox());
|
---|
453 | aTable.rwKeywordSet().define("Unit", String("kms-1"));
|
---|
454 | table_.rwKeywordSet().defineTable ("FREQUENCIES", aTable);
|
---|
455 | return True;
|
---|
456 | }
|
---|
457 |
|
---|
458 | SDFrequencyTable SDMemTable::getSDFreqTable() const {
|
---|
459 | SDFrequencyTable sdft;
|
---|
460 |
|
---|
461 | return sdft;
|
---|
462 | }
|
---|
463 |
|
---|
464 | bool SDMemTable::putSDContainer(const SDContainer& sdc) {
|
---|
465 | ScalarColumn<Double> mjd(table_, "TIME");
|
---|
466 | ScalarColumn<String> srcn(table_, "SRCNAME");
|
---|
467 | ArrayColumn<Float> spec(table_, "SPECTRA");
|
---|
468 | ArrayColumn<uChar> flags(table_, "FLAGTRA");
|
---|
469 | ArrayColumn<Float> ts(table_, "TSYS");
|
---|
470 | ScalarColumn<Int> scan(table_, "SCANID");
|
---|
471 | ScalarColumn<Double> integr(table_, "INTERVAL");
|
---|
472 | ArrayColumn<uInt> freqid(table_, "FREQID");
|
---|
473 |
|
---|
474 | uInt rno = table_.nrow();
|
---|
475 | table_.addRow();
|
---|
476 |
|
---|
477 | mjd.put(rno, sdc.timestamp);
|
---|
478 | srcn.put(rno, sdc.sourcename);
|
---|
479 | spec.put(rno, sdc.getSpectrum());
|
---|
480 | flags.put(rno, sdc.getFlags());
|
---|
481 | ts.put(rno, sdc.getTsys());
|
---|
482 | scan.put(rno, sdc.scanid);
|
---|
483 | integr.put(rno, sdc.interval);
|
---|
484 | freqid.put(rno, sdc.getFreqMap());
|
---|
485 |
|
---|
486 | return true;
|
---|
487 | }
|
---|
488 |
|
---|
489 | SDContainer SDMemTable::getSDContainer(uInt whichRow) const {
|
---|
490 | ROScalarColumn<Double> mjd(table_, "TIME");
|
---|
491 | ROScalarColumn<String> srcn(table_, "SRCNAME");
|
---|
492 | ROArrayColumn<Float> spec(table_, "SPECTRA");
|
---|
493 | ROArrayColumn<uChar> flags(table_, "FLAGTRA");
|
---|
494 | ROArrayColumn<Float> ts(table_, "TSYS");
|
---|
495 | ROScalarColumn<Int> scan(table_, "SCANID");
|
---|
496 | ROScalarColumn<Double> integr(table_, "INTERVAL");
|
---|
497 | ROArrayColumn<uInt> freqid(table_, "FREQID");
|
---|
498 |
|
---|
499 | SDContainer sdc(nBeam(),nIF(),nPol(),nChan());
|
---|
500 | mjd.get(whichRow, sdc.timestamp);
|
---|
501 | srcn.get(whichRow, sdc.sourcename);
|
---|
502 | integr.get(whichRow, sdc.interval);
|
---|
503 | scan.get(whichRow, sdc.scanid);
|
---|
504 | Array<Float> spectrum;
|
---|
505 | Array<Float> tsys;
|
---|
506 | Array<uChar> flagtrum;
|
---|
507 | Vector<uInt> fmap;
|
---|
508 | spec.get(whichRow, spectrum);
|
---|
509 | sdc.putSpectrum(spectrum);
|
---|
510 | flags.get(whichRow, flagtrum);
|
---|
511 | sdc.putFlags(flagtrum);
|
---|
512 | ts.get(whichRow, tsys);
|
---|
513 | sdc.putTsys(tsys);
|
---|
514 | freqid.get(whichRow, fmap);
|
---|
515 | sdc.putFreqMap(fmap);
|
---|
516 | return sdc;
|
---|
517 | }
|
---|
518 | bool SDMemTable::putSDHeader(const SDHeader& sdh) {
|
---|
519 | table_.lock();
|
---|
520 | table_.rwKeywordSet().define("nIF", sdh.nif);
|
---|
521 | table_.rwKeywordSet().define("nBeam", sdh.nbeam);
|
---|
522 | table_.rwKeywordSet().define("nPol", sdh.npol);
|
---|
523 | table_.rwKeywordSet().define("nChan", sdh.nchan);
|
---|
524 | table_.rwKeywordSet().define("Observer", sdh.observer);
|
---|
525 | table_.rwKeywordSet().define("Project", sdh.project);
|
---|
526 | table_.rwKeywordSet().define("Obstype", sdh.obstype);
|
---|
527 | table_.rwKeywordSet().define("AntennaName", sdh.antennaname);
|
---|
528 | table_.rwKeywordSet().define("AntennaPosition", sdh.antennaposition);
|
---|
529 | table_.rwKeywordSet().define("Equinox", sdh.equinox);
|
---|
530 | table_.rwKeywordSet().define("FreqRefFrame", sdh.freqref);
|
---|
531 | table_.rwKeywordSet().define("FreqRefVal", sdh.reffreq);
|
---|
532 | table_.rwKeywordSet().define("Bandwidth", sdh.bandwidth);
|
---|
533 | table_.rwKeywordSet().define("UTC", sdh.utc);
|
---|
534 | table_.unlock();
|
---|
535 | return true;
|
---|
536 | }
|
---|
537 |
|
---|
538 | SDHeader SDMemTable::getSDHeader() const {
|
---|
539 | SDHeader sdh;
|
---|
540 | table_.keywordSet().get("nBeam",sdh.nbeam);
|
---|
541 | table_.keywordSet().get("nIF",sdh.nif);
|
---|
542 | table_.keywordSet().get("nPol",sdh.npol);
|
---|
543 | table_.keywordSet().get("nChan",sdh.nchan);
|
---|
544 | table_.keywordSet().get("Observer", sdh.observer);
|
---|
545 | table_.keywordSet().get("Project", sdh.project);
|
---|
546 | table_.keywordSet().get("Obstype", sdh.obstype);
|
---|
547 | table_.keywordSet().get("AntennaName", sdh.antennaname);
|
---|
548 | table_.keywordSet().get("AntennaPosition", sdh.antennaposition);
|
---|
549 | table_.keywordSet().get("Equinox", sdh.equinox);
|
---|
550 | table_.keywordSet().get("FreqRefFrame", sdh.freqref);
|
---|
551 | table_.keywordSet().get("FreqRefVal", sdh.reffreq);
|
---|
552 | table_.keywordSet().get("Bandwidth", sdh.bandwidth);
|
---|
553 | table_.keywordSet().get("UTC", sdh.utc);
|
---|
554 | return sdh;
|
---|
555 | }
|
---|
556 | void SDMemTable::makePersistent(const std::string& filename) {
|
---|
557 | table_.deepCopy(filename,Table::New);
|
---|
558 | }
|
---|
559 |
|
---|
560 | Int SDMemTable::nScans() const {
|
---|
561 | Int n = 0;
|
---|
562 | ROScalarColumn<Int> scans(table_, "SCANID");
|
---|
563 | Int previous = -1;Int current=0;
|
---|
564 | for (uInt i=0; i< scans.nrow();i++) {
|
---|
565 | scans.getScalar(i,current);
|
---|
566 | if (previous != current) {
|
---|
567 | previous = current;
|
---|
568 | n++;
|
---|
569 | }
|
---|
570 | }
|
---|
571 | return n;
|
---|
572 | }
|
---|
573 |
|
---|
574 | void SDMemTable::summary() const {
|
---|
575 | ROScalarColumn<Int> scans(table_, "SCANID");
|
---|
576 | ROScalarColumn<String> srcs(table_, "SRCNAME");
|
---|
577 | cout << "*************** Header ***************" << endl;
|
---|
578 | cout << "nBeam = " << nBeam() << "\t"
|
---|
579 | << "nIF = " << nIF() << endl
|
---|
580 | << "nPol = " << nPol() << "\t"
|
---|
581 | << "nChan = " << nChan() << "\t" << endl;
|
---|
582 | cout << "*************** Header ***************" << endl;
|
---|
583 | uInt count = 0;
|
---|
584 | String name;
|
---|
585 | Int previous = -1;Int current=0;
|
---|
586 | cout << "Scan\tSource\t\tTime\t\tIntegration" << endl;
|
---|
587 | for (uInt i=0; i< scans.nrow();i++) {
|
---|
588 | scans.getScalar(i,current);
|
---|
589 | if (previous != current) {
|
---|
590 | srcs.getScalar(i,name);
|
---|
591 | previous = current;
|
---|
592 | Double t = getInterval();
|
---|
593 | String unit("sec");
|
---|
594 | if (t/60.0 > 1.0) {
|
---|
595 | t/=60.0;unit = "min";
|
---|
596 | }
|
---|
597 | cout << count << "\t"
|
---|
598 | << name << "\t"
|
---|
599 | << getTime() << "\t"
|
---|
600 | << setprecision(2) << setiosflags(std::ios_base::fixed)
|
---|
601 | << t << " " << unit << endl
|
---|
602 | << endl;
|
---|
603 | count++;
|
---|
604 | }
|
---|
605 | }
|
---|
606 | cout << "Table contains " << table_.nrow() << " integration(s)." << endl;
|
---|
607 | cout << "in " << count << " scan(s)." << endl;
|
---|
608 | }
|
---|
609 |
|
---|
610 | Int SDMemTable::nBeam() const {
|
---|
611 | Int n;
|
---|
612 | table_.keywordSet().get("nBeam",n);
|
---|
613 | return n;
|
---|
614 | }
|
---|
615 | Int SDMemTable::nIF() const {
|
---|
616 | Int n;
|
---|
617 | table_.keywordSet().get("nIF",n);
|
---|
618 | return n;
|
---|
619 | }
|
---|
620 | Int SDMemTable::nPol() const {
|
---|
621 | Int n;
|
---|
622 | table_.keywordSet().get("nPol",n);
|
---|
623 | return n;
|
---|
624 | }
|
---|
625 | Int SDMemTable::nChan() const {
|
---|
626 | Int n;
|
---|
627 | table_.keywordSet().get("nChan",n);
|
---|
628 | return n;
|
---|
629 | }
|
---|
630 | /*
|
---|
631 | void SDMemTable::maskChannels(const std::vector<Int>& whichChans ) {
|
---|
632 |
|
---|
633 | std::vector<int>::iterator it;
|
---|
634 | ArrayAccessor<uChar, Axis<2> > j(flags_);
|
---|
635 | for (it = whichChans.begin(); it != whichChans.end(); it++) {
|
---|
636 | j.reset(j.begin(uInt(*it)));
|
---|
637 | for (ArrayAccessor<uChar, Axis<0> > i(j); i != i.end(); ++i) {
|
---|
638 | for (ArrayAccessor<uChar, Axis<1> > ii(i); ii != ii.end(); ++ii) {
|
---|
639 | for (ArrayAccessor<uChar, Axis<3> > iii(ii);
|
---|
640 | iii != iii.end(); ++iii) {
|
---|
641 | (*iii) =
|
---|
642 | }
|
---|
643 | }
|
---|
644 | }
|
---|
645 | }
|
---|
646 |
|
---|
647 | }
|
---|
648 | */
|
---|