[2] | 1 | //#---------------------------------------------------------------------------
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| 2 | //# SDMemTable.cc: A MemoryTable container for single dish integrations
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| 3 | //#---------------------------------------------------------------------------
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| 4 | //# Copyright (C) 2004
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[125] | 5 | //# ATNF
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[2] | 6 | //#
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| 7 | //# This program is free software; you can redistribute it and/or modify it
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| 8 | //# under the terms of the GNU General Public License as published by the Free
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| 9 | //# Software Foundation; either version 2 of the License, or (at your option)
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| 10 | //# any later version.
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| 11 | //#
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| 12 | //# This program is distributed in the hope that it will be useful, but
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| 13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
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| 15 | //# Public License for more details.
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| 16 | //#
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| 17 | //# You should have received a copy of the GNU General Public License along
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| 18 | //# with this program; if not, write to the Free Software Foundation, Inc.,
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| 19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA.
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| 20 | //#
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| 21 | //# Correspondence concerning this software should be addressed as follows:
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| 22 | //# Internet email: Malte.Marquarding@csiro.au
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| 23 | //# Postal address: Malte Marquarding,
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| 24 | //# Australia Telescope National Facility,
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| 25 | //# P.O. Box 76,
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| 26 | //# Epping, NSW, 2121,
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| 27 | //# AUSTRALIA
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| 28 | //#
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| 29 | //# $Id:
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| 30 | //#---------------------------------------------------------------------------
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| 31 |
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[206] | 32 | #include <map>
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| 33 |
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[125] | 34 | #include <casa/aips.h>
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[80] | 35 | #include <casa/iostream.h>
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| 36 | #include <casa/iomanip.h>
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| 37 | #include <casa/Arrays/Array.h>
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| 38 | #include <casa/Arrays/ArrayMath.h>
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| 39 | #include <casa/Arrays/MaskArrMath.h>
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| 40 | #include <casa/Arrays/ArrayLogical.h>
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| 41 | #include <casa/Arrays/ArrayAccessor.h>
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[455] | 42 | #include <casa/Arrays/VectorSTLIterator.h>
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[206] | 43 | #include <casa/Arrays/Vector.h>
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[418] | 44 | #include <casa/BasicMath/Math.h>
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[286] | 45 | #include <casa/Quanta/MVAngle.h>
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[2] | 46 |
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[80] | 47 | #include <tables/Tables/TableParse.h>
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| 48 | #include <tables/Tables/TableDesc.h>
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[488] | 49 | #include <tables/Tables/TableCopy.h>
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[80] | 50 | #include <tables/Tables/SetupNewTab.h>
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| 51 | #include <tables/Tables/ScaColDesc.h>
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| 52 | #include <tables/Tables/ArrColDesc.h>
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[2] | 53 |
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[80] | 54 | #include <tables/Tables/ExprNode.h>
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| 55 | #include <tables/Tables/TableRecord.h>
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| 56 | #include <measures/Measures/MFrequency.h>
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| 57 | #include <measures/Measures/MeasTable.h>
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[105] | 58 | #include <coordinates/Coordinates/CoordinateUtil.h>
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[80] | 59 | #include <casa/Quanta/MVTime.h>
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[281] | 60 | #include <casa/Quanta/MVAngle.h>
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[2] | 61 |
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[215] | 62 | #include "SDDefs.h"
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[2] | 63 | #include "SDContainer.h"
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[365] | 64 | #include "MathUtils.h"
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[418] | 65 | #include "SDPol.h"
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[476] | 66 | #include "SDAttr.h"
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[2] | 67 |
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[465] | 68 | #include "SDMemTable.h"
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[206] | 69 |
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[125] | 70 | using namespace casa;
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[83] | 71 | using namespace asap;
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[2] | 72 |
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[18] | 73 | SDMemTable::SDMemTable() :
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| 74 | IFSel_(0),
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| 75 | beamSel_(0),
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[206] | 76 | polSel_(0)
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| 77 | {
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[18] | 78 | setup();
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[322] | 79 | attach();
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[18] | 80 | }
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[206] | 81 |
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[2] | 82 | SDMemTable::SDMemTable(const std::string& name) :
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| 83 | IFSel_(0),
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| 84 | beamSel_(0),
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[206] | 85 | polSel_(0)
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| 86 | {
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[50] | 87 | Table tab(name);
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[483] | 88 | uInt version;
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| 89 | tab.keywordSet().get("VERSION", version);
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| 90 | if (version != version_) {
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| 91 | throw(AipsError("Unsupported version of ASAP file."));
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| 92 | }
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[22] | 93 | table_ = tab.copyToMemoryTable("dummy");
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[206] | 94 | //cerr << "hello from C SDMemTable @ " << this << endl;
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[329] | 95 | attach();
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[2] | 96 | }
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| 97 |
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[206] | 98 | SDMemTable::SDMemTable(const SDMemTable& other, Bool clear)
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| 99 | {
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[148] | 100 | table_ = other.table_.copyToMemoryTable(String("dummy"));
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[2] | 101 | // clear all rows()
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[16] | 102 | if (clear) {
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[148] | 103 | table_.removeRow(this->table_.rowNumbers());
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[483] | 104 | IFSel_= 0;
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| 105 | beamSel_= 0;
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| 106 | polSel_= 0;
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| 107 | chanMask_.resize(0);
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[16] | 108 | } else {
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[483] | 109 | IFSel_= other.IFSel_;
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| 110 | beamSel_= other.beamSel_;
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| 111 | polSel_= other.polSel_;
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| 112 | chanMask_.resize(0);
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| 113 | chanMask_ = other.chanMask_;
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[16] | 114 | }
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[483] | 115 |
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[322] | 116 | attach();
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[206] | 117 | //cerr << "hello from CC SDMemTable @ " << this << endl;
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[2] | 118 | }
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| 119 |
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[80] | 120 | SDMemTable::SDMemTable(const Table& tab, const std::string& exprs) :
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[2] | 121 | IFSel_(0),
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| 122 | beamSel_(0),
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[206] | 123 | polSel_(0)
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| 124 | {
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[2] | 125 | Table t = tableCommand(exprs,tab);
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[89] | 126 | if (t.nrow() == 0)
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| 127 | throw(AipsError("Query unsuccessful."));
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[22] | 128 | table_ = t.copyToMemoryTable("dummy");
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[329] | 129 | attach();
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[380] | 130 | renumber();
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[2] | 131 | }
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| 132 |
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[206] | 133 | SDMemTable::~SDMemTable()
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| 134 | {
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[105] | 135 | //cerr << "goodbye from SDMemTable @ " << this << endl;
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[2] | 136 | }
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| 137 |
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[206] | 138 | SDMemTable SDMemTable::getScan(Int scanID) const
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| 139 | {
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[80] | 140 | String cond("SELECT * from $1 WHERE SCANID == ");
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| 141 | cond += String::toString(scanID);
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| 142 | return SDMemTable(table_, cond);
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[2] | 143 | }
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| 144 |
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[206] | 145 | SDMemTable &SDMemTable::operator=(const SDMemTable& other)
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| 146 | {
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[148] | 147 | if (this != &other) {
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| 148 | IFSel_= other.IFSel_;
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| 149 | beamSel_= other.beamSel_;
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| 150 | polSel_= other.polSel_;
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| 151 | chanMask_.resize(0);
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| 152 | chanMask_ = other.chanMask_;
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| 153 | table_ = other.table_.copyToMemoryTable(String("dummy"));
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[322] | 154 | attach();
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[206] | 155 | }
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[138] | 156 | return *this;
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| 157 | }
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| 158 |
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[206] | 159 | SDMemTable SDMemTable::getSource(const std::string& source) const
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| 160 | {
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[80] | 161 | String cond("SELECT * from $1 WHERE SRCNAME == ");
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| 162 | cond += source;
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| 163 | return SDMemTable(table_, cond);
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| 164 | }
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| 165 |
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[206] | 166 | void SDMemTable::setup()
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| 167 | {
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[2] | 168 | TableDesc td("", "1", TableDesc::Scratch);
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| 169 | td.comment() = "A SDMemTable";
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[483] | 170 | td.rwKeywordSet().define("VERSION", Int(version_));
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| 171 |
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[2] | 172 | td.addColumn(ScalarColumnDesc<Double>("TIME"));
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| 173 | td.addColumn(ScalarColumnDesc<String>("SRCNAME"));
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| 174 | td.addColumn(ArrayColumnDesc<Float>("SPECTRA"));
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| 175 | td.addColumn(ArrayColumnDesc<uChar>("FLAGTRA"));
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[89] | 176 | td.addColumn(ArrayColumnDesc<Float>("TSYS"));
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[418] | 177 | td.addColumn(ArrayColumnDesc<Float>("STOKES"));
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[89] | 178 | td.addColumn(ScalarColumnDesc<Int>("SCANID"));
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| 179 | td.addColumn(ScalarColumnDesc<Double>("INTERVAL"));
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[39] | 180 | td.addColumn(ArrayColumnDesc<uInt>("FREQID"));
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[386] | 181 | td.addColumn(ArrayColumnDesc<uInt>("RESTFREQID"));
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[78] | 182 | td.addColumn(ArrayColumnDesc<Double>("DIRECTION"));
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[105] | 183 | td.addColumn(ScalarColumnDesc<String>("FIELDNAME"));
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| 184 | td.addColumn(ScalarColumnDesc<String>("TCALTIME"));
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| 185 | td.addColumn(ArrayColumnDesc<Float>("TCAL"));
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| 186 | td.addColumn(ScalarColumnDesc<Float>("AZIMUTH"));
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| 187 | td.addColumn(ScalarColumnDesc<Float>("ELEVATION"));
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| 188 | td.addColumn(ScalarColumnDesc<Float>("PARANGLE"));
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| 189 | td.addColumn(ScalarColumnDesc<Int>("REFBEAM"));
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[455] | 190 | td.addColumn(ArrayColumnDesc<Int>("FITID"));
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[105] | 191 |
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[418] | 192 | // Now create Table SetUp from the description.
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[22] | 193 | SetupNewTable aNewTab("dummy", td, Table::New);
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[418] | 194 |
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[455] | 195 | // Bind the Stokes Virtual machine to the STOKES column Because we
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| 196 | // don't know how many polarizations will be in the data at this
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| 197 | // point, we must bind the Virtual Engine regardless. The STOKES
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| 198 | // column won't be accessed if not appropriate (nPol=4)
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[483] | 199 | SDStokesEngine::registerClass();
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| 200 | SDStokesEngine stokesEngine(String("STOKES"), String("SPECTRA"));
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| 201 | aNewTab.bindColumn("STOKES", stokesEngine);
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| 202 |
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| 203 | // Create Table
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| 204 | table_ = Table(aNewTab, Table::Memory, 0);
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[455] | 205 | // add subtable
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| 206 | TableDesc tdf("", "1", TableDesc::Scratch);
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| 207 | tdf.addColumn(ArrayColumnDesc<String>("FUNCTIONS"));
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| 208 | tdf.addColumn(ArrayColumnDesc<Int>("COMPONENTS"));
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| 209 | tdf.addColumn(ArrayColumnDesc<Double>("PARAMETERS"));
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| 210 | tdf.addColumn(ArrayColumnDesc<Bool>("PARMASK"));
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[465] | 211 | tdf.addColumn(ArrayColumnDesc<String>("FRAMEINFO"));
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[455] | 212 | SetupNewTable fittab("fits", tdf, Table::New);
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| 213 | Table fitTable(fittab, Table::Memory);
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| 214 | table_.rwKeywordSet().defineTable("FITS", fitTable);
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[418] | 215 |
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[483] | 216 | TableDesc tdh("", "1", TableDesc::Scratch);
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| 217 | tdh.addColumn(ScalarColumnDesc<String>("ITEM"));
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| 218 | SetupNewTable histtab("hist", tdh, Table::New);
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| 219 | Table histTable(histtab, Table::Memory);
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| 220 | table_.rwKeywordSet().defineTable("HISTORY", histTable);
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[2] | 221 | }
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| 222 |
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[380] | 223 | void SDMemTable::attach()
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[322] | 224 | {
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| 225 | timeCol_.attach(table_, "TIME");
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| 226 | srcnCol_.attach(table_, "SRCNAME");
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| 227 | specCol_.attach(table_, "SPECTRA");
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| 228 | flagsCol_.attach(table_, "FLAGTRA");
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| 229 | tsCol_.attach(table_, "TSYS");
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[418] | 230 | stokesCol_.attach(table_, "STOKES");
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[322] | 231 | scanCol_.attach(table_, "SCANID");
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| 232 | integrCol_.attach(table_, "INTERVAL");
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| 233 | freqidCol_.attach(table_, "FREQID");
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[386] | 234 | restfreqidCol_.attach(table_, "RESTFREQID");
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[322] | 235 | dirCol_.attach(table_, "DIRECTION");
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| 236 | fldnCol_.attach(table_, "FIELDNAME");
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| 237 | tcaltCol_.attach(table_, "TCALTIME");
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| 238 | tcalCol_.attach(table_, "TCAL");
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| 239 | azCol_.attach(table_, "AZIMUTH");
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| 240 | elCol_.attach(table_, "ELEVATION");
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| 241 | paraCol_.attach(table_, "PARANGLE");
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| 242 | rbeamCol_.attach(table_, "REFBEAM");
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[455] | 243 | fitCol_.attach(table_,"FITID");
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[322] | 244 | }
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| 245 |
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| 246 |
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[206] | 247 | std::string SDMemTable::getSourceName(Int whichRow) const
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| 248 | {
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[2] | 249 | String name;
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[322] | 250 | srcnCol_.get(whichRow, name);
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[2] | 251 | return name;
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| 252 | }
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| 253 |
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[281] | 254 | std::string SDMemTable::getTime(Int whichRow, Bool showDate) const
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[206] | 255 | {
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[2] | 256 | Double tm;
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[281] | 257 | if (whichRow > -1) {
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[322] | 258 | timeCol_.get(whichRow, tm);
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[281] | 259 | } else {
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| 260 | table_.keywordSet().get("UTC",tm);
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| 261 | }
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[50] | 262 | MVTime mvt(tm);
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[281] | 263 | if (showDate)
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| 264 | mvt.setFormat(MVTime::YMD);
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| 265 | else
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| 266 | mvt.setFormat(MVTime::TIME);
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[50] | 267 | ostringstream oss;
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| 268 | oss << mvt;
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[281] | 269 | return String(oss);
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[2] | 270 | }
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[281] | 271 |
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[206] | 272 | double SDMemTable::getInterval(Int whichRow) const
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| 273 | {
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[50] | 274 | Double intval;
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[322] | 275 | integrCol_.get(whichRow, intval);
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[50] | 276 | return intval;
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| 277 | }
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[2] | 278 |
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[206] | 279 | bool SDMemTable::setIF(Int whichIF)
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| 280 | {
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[50] | 281 | if ( whichIF >= 0 && whichIF < nIF()) {
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[2] | 282 | IFSel_ = whichIF;
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| 283 | return true;
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[50] | 284 | }
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| 285 | return false;
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[2] | 286 | }
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[50] | 287 |
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[206] | 288 | bool SDMemTable::setBeam(Int whichBeam)
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| 289 | {
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[50] | 290 | if ( whichBeam >= 0 && whichBeam < nBeam()) {
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[2] | 291 | beamSel_ = whichBeam;
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| 292 | return true;
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[50] | 293 | }
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| 294 | return false;
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| 295 | }
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[2] | 296 |
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[206] | 297 | bool SDMemTable::setPol(Int whichPol)
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| 298 | {
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[50] | 299 | if ( whichPol >= 0 && whichPol < nPol()) {
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[2] | 300 | polSel_ = whichPol;
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| 301 | return true;
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[50] | 302 | }
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| 303 | return false;
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[2] | 304 | }
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| 305 |
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[380] | 306 | void SDMemTable::resetCursor()
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[303] | 307 | {
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| 308 | polSel_ = 0;
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| 309 | IFSel_ = 0;
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| 310 | beamSel_ = 0;
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| 311 | }
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| 312 |
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[206] | 313 | bool SDMemTable::setMask(std::vector<int> whichChans)
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| 314 | {
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[16] | 315 | std::vector<int>::iterator it;
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[322] | 316 | uInt n = flagsCol_.shape(0)(3);
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[105] | 317 | if (whichChans.empty()) {
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| 318 | chanMask_ = std::vector<bool>(n,true);
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| 319 | return true;
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| 320 | }
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[16] | 321 | chanMask_.resize(n,true);
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[39] | 322 | for (it = whichChans.begin(); it != whichChans.end(); ++it) {
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[105] | 323 | if (*it < n) {
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[16] | 324 | chanMask_[*it] = false;
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[105] | 325 | }
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[16] | 326 | }
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[2] | 327 | return true;
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| 328 | }
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| 329 |
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[447] | 330 | std::vector<bool> SDMemTable::getMask(Int whichRow) const
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| 331 | {
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| 332 |
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[16] | 333 | std::vector<bool> mask;
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[455] | 334 |
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[16] | 335 | Array<uChar> arr;
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[322] | 336 | flagsCol_.get(whichRow, arr);
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[455] | 337 |
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[206] | 338 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > aa0(arr);
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[16] | 339 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
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[206] | 340 | ArrayAccessor<uChar, Axis<asap::IFAxis> > aa1(aa0);
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[16] | 341 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
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[206] | 342 | ArrayAccessor<uChar, Axis<asap::PolAxis> > aa2(aa1);
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[16] | 343 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
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| 344 |
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| 345 | Bool useUserMask = ( chanMask_.size() == arr.shape()(3) );
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| 346 |
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| 347 | std::vector<bool> tmp;
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| 348 | tmp = chanMask_; // WHY the fxxx do I have to make a copy here
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| 349 | std::vector<bool>::iterator miter;
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| 350 | miter = tmp.begin();
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| 351 |
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[206] | 352 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) {
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[16] | 353 | bool out =!static_cast<bool>(*i);
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| 354 | if (useUserMask) {
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| 355 | out = out && (*miter);
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| 356 | miter++;
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| 357 | }
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| 358 | mask.push_back(out);
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[89] | 359 | }
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[16] | 360 | return mask;
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[2] | 361 | }
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[418] | 362 |
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| 363 |
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| 364 |
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[206] | 365 | std::vector<float> SDMemTable::getSpectrum(Int whichRow) const
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| 366 | {
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[2] | 367 | Array<Float> arr;
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[322] | 368 | specCol_.get(whichRow, arr);
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[455] | 369 | return getFloatSpectrum(arr);
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[418] | 370 | }
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| 371 |
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[455] | 372 | std::vector<float> SDMemTable::getStokesSpectrum(Int whichRow, Bool doPol,
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| 373 | Float paOffset) const
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[472] | 374 | //
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| 375 | // Gets one STokes parameter depending on cursor polSel location
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| 376 | // doPol=False : I,Q,U,V
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| 377 | // doPol=True : I,P,PA,V ; P = sqrt(Q**2+U**2), PA = 0.5*atan2(Q,U)
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| 378 | //
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[418] | 379 | {
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[430] | 380 | AlwaysAssert(asap::nAxes==4,AipsError);
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[428] | 381 | if (nPol()!=1 && nPol()!=2 && nPol()!=4) {
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| 382 | throw (AipsError("You must have 1,2 or 4 polarizations to get the Stokes parameters"));
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[418] | 383 | }
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| 384 | Array<Float> arr;
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| 385 | stokesCol_.get(whichRow, arr);
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[455] | 386 |
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[430] | 387 | if (doPol && (polSel_==1 || polSel_==2)) { // Q,U --> P, P.A.
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| 388 |
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[455] | 389 | // Set current cursor location
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[418] | 390 | const IPosition& shape = arr.shape();
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[430] | 391 | IPosition start, end;
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[483] | 392 | getCursorSlice(start, end, shape);
|
---|
[430] | 393 |
|
---|
[455] | 394 | // Get Q and U slices
|
---|
[430] | 395 |
|
---|
[455] | 396 | Array<Float> Q = SDPolUtil::getStokesSlice(arr,start,end,"Q");
|
---|
| 397 | Array<Float> U = SDPolUtil::getStokesSlice(arr,start,end,"U");
|
---|
[430] | 398 |
|
---|
[455] | 399 | // Compute output
|
---|
[430] | 400 |
|
---|
[418] | 401 | Array<Float> out;
|
---|
| 402 | if (polSel_==1) { // P
|
---|
| 403 | out = SDPolUtil::polarizedIntensity(Q,U);
|
---|
| 404 | } else if (polSel_==2) { // P.A.
|
---|
[426] | 405 | out = SDPolUtil::positionAngle(Q,U) + paOffset;
|
---|
[418] | 406 | }
|
---|
[430] | 407 |
|
---|
[455] | 408 | // Copy to output
|
---|
[430] | 409 |
|
---|
[418] | 410 | IPosition vecShape(1,shape(asap::ChanAxis));
|
---|
| 411 | Vector<Float> outV = out.reform(vecShape);
|
---|
[455] | 412 | std::vector<float> stlout;
|
---|
| 413 | outV.tovector(stlout);
|
---|
| 414 | return stlout;
|
---|
| 415 |
|
---|
[418] | 416 | } else {
|
---|
[430] | 417 |
|
---|
[455] | 418 | // Selects at the cursor location
|
---|
| 419 | return getFloatSpectrum(arr);
|
---|
[418] | 420 | }
|
---|
| 421 | }
|
---|
| 422 |
|
---|
[455] | 423 | std::vector<float> SDMemTable::getCircularSpectrum(Int whichRow,
|
---|
| 424 | Bool doRR) const
|
---|
| 425 | // Gets
|
---|
| 426 | // RR = I + V
|
---|
| 427 | // LL = I - V
|
---|
[430] | 428 | {
|
---|
| 429 | AlwaysAssert(asap::nAxes==4,AipsError);
|
---|
| 430 | if (nPol()!=4) {
|
---|
| 431 | throw (AipsError("You must have 4 polarizations to get RR or LL"));
|
---|
| 432 | }
|
---|
| 433 | Array<Float> arr;
|
---|
| 434 | stokesCol_.get(whichRow, arr);
|
---|
| 435 |
|
---|
[455] | 436 | // Set current cursor location
|
---|
[430] | 437 |
|
---|
| 438 | const IPosition& shape = arr.shape();
|
---|
| 439 | IPosition start, end;
|
---|
[483] | 440 | getCursorSlice(start, end, shape);
|
---|
[430] | 441 |
|
---|
[455] | 442 | // Get I and V slices
|
---|
[430] | 443 |
|
---|
[455] | 444 | Array<Float> I = SDPolUtil::getStokesSlice(arr,start,end,"I");
|
---|
| 445 | Array<Float> V = SDPolUtil::getStokesSlice(arr,start,end,"V");
|
---|
[430] | 446 |
|
---|
[455] | 447 | // Compute output
|
---|
[430] | 448 |
|
---|
[455] | 449 | Array<Float> out = SDPolUtil::circularPolarizationFromStokes(I, V, doRR);
|
---|
[430] | 450 |
|
---|
[455] | 451 | // Copy to output
|
---|
[430] | 452 |
|
---|
| 453 | IPosition vecShape(1,shape(asap::ChanAxis));
|
---|
| 454 | Vector<Float> outV = out.reform(vecShape);
|
---|
[455] | 455 | std::vector<float> stlout;
|
---|
| 456 | outV.tovector(stlout);
|
---|
| 457 |
|
---|
| 458 | return stlout;
|
---|
[430] | 459 | }
|
---|
| 460 |
|
---|
[472] | 461 | Array<Float> SDMemTable::getStokesSpectrum(Int whichRow, Int iBeam, Int iIF) const
|
---|
| 462 | {
|
---|
[418] | 463 |
|
---|
[472] | 464 | // Get data
|
---|
| 465 |
|
---|
| 466 | Array<Float> arr;
|
---|
| 467 | stokesCol_.get(whichRow, arr);
|
---|
| 468 |
|
---|
| 469 | // Set current cursor location and overwrite polarization axis
|
---|
| 470 |
|
---|
| 471 | const IPosition& shape = arr.shape();
|
---|
| 472 | IPosition start(shape.nelements(),0);
|
---|
| 473 | IPosition end(shape-1);
|
---|
| 474 | if (iBeam!=-1) {
|
---|
| 475 | start(asap::BeamAxis) = iBeam;
|
---|
| 476 | end(asap::BeamAxis) = iBeam;
|
---|
| 477 | }
|
---|
| 478 | if (iIF!=-1) {
|
---|
| 479 | start(asap::IFAxis) = iIF;
|
---|
| 480 | end(asap::IFAxis) = iIF;
|
---|
| 481 | }
|
---|
| 482 |
|
---|
| 483 | // Get slice
|
---|
| 484 |
|
---|
| 485 | return arr(start,end);
|
---|
| 486 | }
|
---|
| 487 |
|
---|
| 488 |
|
---|
[206] | 489 | std::vector<string> SDMemTable::getCoordInfo() const
|
---|
| 490 | {
|
---|
[105] | 491 | String un;
|
---|
| 492 | Table t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
| 493 | String sunit;
|
---|
| 494 | t.keywordSet().get("UNIT",sunit);
|
---|
| 495 | String dpl;
|
---|
| 496 | t.keywordSet().get("DOPPLER",dpl);
|
---|
| 497 | if (dpl == "") dpl = "RADIO";
|
---|
| 498 | String rfrm;
|
---|
| 499 | t.keywordSet().get("REFFRAME",rfrm);
|
---|
| 500 | std::vector<string> inf;
|
---|
| 501 | inf.push_back(sunit);
|
---|
| 502 | inf.push_back(rfrm);
|
---|
| 503 | inf.push_back(dpl);
|
---|
[263] | 504 | t.keywordSet().get("BASEREFFRAME",rfrm);
|
---|
| 505 | inf.push_back(rfrm);
|
---|
[105] | 506 | return inf;
|
---|
| 507 | }
|
---|
[39] | 508 |
|
---|
[206] | 509 | void SDMemTable::setCoordInfo(std::vector<string> theinfo)
|
---|
| 510 | {
|
---|
[105] | 511 | std::vector<string>::iterator it;
|
---|
[306] | 512 | String un,rfrm, brfrm,dpl;
|
---|
| 513 | un = theinfo[0]; // Abcissa unit
|
---|
| 514 | rfrm = theinfo[1]; // Active (or conversion) frame
|
---|
| 515 | dpl = theinfo[2]; // Doppler
|
---|
| 516 | brfrm = theinfo[3]; // Base frame
|
---|
[455] | 517 |
|
---|
[105] | 518 | Table t = table_.rwKeywordSet().asTable("FREQUENCIES");
|
---|
[455] | 519 |
|
---|
[105] | 520 | Vector<Double> rstf;
|
---|
| 521 | t.keywordSet().get("RESTFREQS",rstf);
|
---|
[455] | 522 |
|
---|
[105] | 523 | Bool canDo = True;
|
---|
| 524 | Unit u1("km/s");Unit u2("Hz");
|
---|
| 525 | if (Unit(un) == u1) {
|
---|
| 526 | Vector<Double> rstf;
|
---|
| 527 | t.keywordSet().get("RESTFREQS",rstf);
|
---|
| 528 | if (rstf.nelements() == 0) {
|
---|
| 529 | throw(AipsError("Can't set unit to km/s if no restfrequencies are specified"));
|
---|
| 530 | }
|
---|
| 531 | } else if (Unit(un) != u2 && un != "") {
|
---|
| 532 | throw(AipsError("Unit not conformant with Spectral Coordinates"));
|
---|
| 533 | }
|
---|
| 534 | t.rwKeywordSet().define("UNIT", un);
|
---|
[455] | 535 |
|
---|
[105] | 536 | MFrequency::Types mdr;
|
---|
| 537 | if (!MFrequency::getType(mdr, rfrm)) {
|
---|
| 538 |
|
---|
| 539 | Int a,b;const uInt* c;
|
---|
| 540 | const String* valid = MFrequency::allMyTypes(a, b, c);
|
---|
| 541 | String pfix = "Please specify a legal frame type. Types are\n";
|
---|
| 542 | throw(AipsError(pfix+(*valid)));
|
---|
| 543 | } else {
|
---|
| 544 | t.rwKeywordSet().define("REFFRAME",rfrm);
|
---|
| 545 | }
|
---|
[455] | 546 |
|
---|
[275] | 547 | MDoppler::Types dtype;
|
---|
| 548 | dpl.upcase();
|
---|
| 549 | if (!MDoppler::getType(dtype, dpl)) {
|
---|
| 550 | throw(AipsError("Doppler type unknown"));
|
---|
| 551 | } else {
|
---|
| 552 | t.rwKeywordSet().define("DOPPLER",dpl);
|
---|
| 553 | }
|
---|
[455] | 554 |
|
---|
[306] | 555 | if (!MFrequency::getType(mdr, brfrm)) {
|
---|
| 556 | Int a,b;const uInt* c;
|
---|
| 557 | const String* valid = MFrequency::allMyTypes(a, b, c);
|
---|
| 558 | String pfix = "Please specify a legal frame type. Types are\n";
|
---|
| 559 | throw(AipsError(pfix+(*valid)));
|
---|
| 560 | } else {
|
---|
| 561 | t.rwKeywordSet().define("BASEREFFRAME",brfrm);
|
---|
| 562 | }
|
---|
[105] | 563 | }
|
---|
| 564 |
|
---|
[286] | 565 |
|
---|
[206] | 566 | std::vector<double> SDMemTable::getAbcissa(Int whichRow) const
|
---|
| 567 | {
|
---|
[286] | 568 | std::vector<double> abc(nChan());
|
---|
[206] | 569 |
|
---|
[455] | 570 | // Get header units keyword
|
---|
[286] | 571 | Table t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
[105] | 572 | String sunit;
|
---|
| 573 | t.keywordSet().get("UNIT",sunit);
|
---|
| 574 | if (sunit == "") sunit = "pixel";
|
---|
| 575 | Unit u(sunit);
|
---|
[286] | 576 |
|
---|
[455] | 577 | // Easy if just wanting pixels
|
---|
[286] | 578 | if (sunit==String("pixel")) {
|
---|
| 579 | // assume channels/pixels
|
---|
| 580 | std::vector<double>::iterator it;
|
---|
| 581 | uInt i=0;
|
---|
| 582 | for (it = abc.begin(); it != abc.end(); ++it) {
|
---|
| 583 | (*it) = Double(i++);
|
---|
| 584 | }
|
---|
| 585 | return abc;
|
---|
[78] | 586 | }
|
---|
| 587 |
|
---|
[455] | 588 | // Continue with km/s or Hz. Get FreqIDs
|
---|
[347] | 589 | Vector<uInt> freqIDs;
|
---|
| 590 | freqidCol_.get(whichRow, freqIDs);
|
---|
| 591 | uInt freqID = freqIDs(IFSel_);
|
---|
[386] | 592 | restfreqidCol_.get(whichRow, freqIDs);
|
---|
| 593 | uInt restFreqID = freqIDs(IFSel_);
|
---|
[286] | 594 |
|
---|
[455] | 595 | // Get SpectralCoordinate, set reference frame conversion,
|
---|
| 596 | // velocity conversion, and rest freq state
|
---|
[286] | 597 |
|
---|
[386] | 598 | SpectralCoordinate spc = getSpectralCoordinate(freqID, restFreqID, whichRow);
|
---|
[286] | 599 | Vector<Double> pixel(nChan());
|
---|
| 600 | indgen(pixel);
|
---|
[455] | 601 |
|
---|
[286] | 602 | if (u == Unit("km/s")) {
|
---|
| 603 | Vector<Double> world;
|
---|
| 604 | spc.pixelToVelocity(world,pixel);
|
---|
| 605 | std::vector<double>::iterator it;
|
---|
| 606 | uInt i = 0;
|
---|
| 607 | for (it = abc.begin(); it != abc.end(); ++it) {
|
---|
| 608 | (*it) = world[i];
|
---|
| 609 | i++;
|
---|
| 610 | }
|
---|
[39] | 611 | } else if (u == Unit("Hz")) {
|
---|
[286] | 612 |
|
---|
[455] | 613 | // Set world axis units
|
---|
[39] | 614 | Vector<String> wau(1); wau = u.getName();
|
---|
| 615 | spc.setWorldAxisUnits(wau);
|
---|
[455] | 616 |
|
---|
[39] | 617 | std::vector<double>::iterator it;
|
---|
| 618 | Double tmp;
|
---|
| 619 | uInt i = 0;
|
---|
[286] | 620 | for (it = abc.begin(); it != abc.end(); ++it) {
|
---|
| 621 | spc.toWorld(tmp,pixel[i]);
|
---|
[39] | 622 | (*it) = tmp;
|
---|
| 623 | i++;
|
---|
| 624 | }
|
---|
| 625 | }
|
---|
[286] | 626 | return abc;
|
---|
[39] | 627 | }
|
---|
| 628 |
|
---|
[164] | 629 | std::string SDMemTable::getAbcissaString(Int whichRow) const
|
---|
[105] | 630 | {
|
---|
| 631 | Table t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
[455] | 632 |
|
---|
[105] | 633 | String sunit;
|
---|
| 634 | t.keywordSet().get("UNIT",sunit);
|
---|
| 635 | if (sunit == "") sunit = "pixel";
|
---|
| 636 | Unit u(sunit);
|
---|
[455] | 637 |
|
---|
[347] | 638 | Vector<uInt> freqIDs;
|
---|
| 639 | freqidCol_.get(whichRow, freqIDs);
|
---|
[386] | 640 | uInt freqID = freqIDs(IFSel_);
|
---|
| 641 | restfreqidCol_.get(whichRow, freqIDs);
|
---|
| 642 | uInt restFreqID = freqIDs(IFSel_);
|
---|
[286] | 643 |
|
---|
[455] | 644 | // Get SpectralCoordinate, with frame, velocity, rest freq state set
|
---|
| 645 | SpectralCoordinate spc = getSpectralCoordinate(freqID, restFreqID, whichRow);
|
---|
[286] | 646 |
|
---|
[105] | 647 | String s = "Channel";
|
---|
| 648 | if (u == Unit("km/s")) {
|
---|
| 649 | s = CoordinateUtil::axisLabel(spc,0,True,True,True);
|
---|
| 650 | } else if (u == Unit("Hz")) {
|
---|
| 651 | Vector<String> wau(1);wau = u.getName();
|
---|
| 652 | spc.setWorldAxisUnits(wau);
|
---|
[455] | 653 |
|
---|
[286] | 654 | s = CoordinateUtil::axisLabel(spc,0,True,True,False);
|
---|
[105] | 655 | }
|
---|
| 656 | return s;
|
---|
| 657 | }
|
---|
| 658 |
|
---|
[206] | 659 | void SDMemTable::setSpectrum(std::vector<float> spectrum, int whichRow)
|
---|
| 660 | {
|
---|
[89] | 661 | Array<Float> arr;
|
---|
[322] | 662 | specCol_.get(whichRow, arr);
|
---|
[455] | 663 | if (spectrum.size() != arr.shape()(asap::ChanAxis)) {
|
---|
[89] | 664 | throw(AipsError("Attempting to set spectrum with incorrect length."));
|
---|
| 665 | }
|
---|
| 666 |
|
---|
[455] | 667 | // Setup accessors
|
---|
[206] | 668 | ArrayAccessor<Float, Axis<asap::BeamAxis> > aa0(arr);
|
---|
[447] | 669 | aa0.reset(aa0.begin(uInt(beamSel_))); // Beam selection
|
---|
[206] | 670 | ArrayAccessor<Float, Axis<asap::IFAxis> > aa1(aa0);
|
---|
[447] | 671 | aa1.reset(aa1.begin(uInt(IFSel_))); // IF selection
|
---|
[206] | 672 | ArrayAccessor<Float, Axis<asap::PolAxis> > aa2(aa1);
|
---|
[447] | 673 | aa2.reset(aa2.begin(uInt(polSel_))); // Pol selection
|
---|
[89] | 674 |
|
---|
[455] | 675 | // Iterate
|
---|
[89] | 676 | std::vector<float>::iterator it = spectrum.begin();
|
---|
[206] | 677 | for (ArrayAccessor<Float, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) {
|
---|
[89] | 678 | (*i) = Float(*it);
|
---|
| 679 | it++;
|
---|
| 680 | }
|
---|
[322] | 681 | specCol_.put(whichRow, arr);
|
---|
[89] | 682 | }
|
---|
| 683 |
|
---|
[206] | 684 | void SDMemTable::getSpectrum(Vector<Float>& spectrum, Int whichRow) const
|
---|
| 685 | {
|
---|
[21] | 686 | Array<Float> arr;
|
---|
[322] | 687 | specCol_.get(whichRow, arr);
|
---|
[418] | 688 |
|
---|
[455] | 689 | // Iterate and extract
|
---|
[21] | 690 | spectrum.resize(arr.shape()(3));
|
---|
[206] | 691 | ArrayAccessor<Float, Axis<asap::BeamAxis> > aa0(arr);
|
---|
[21] | 692 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
|
---|
[206] | 693 | ArrayAccessor<Float, Axis<asap::IFAxis> > aa1(aa0);
|
---|
[21] | 694 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
|
---|
[206] | 695 | ArrayAccessor<Float, Axis<asap::PolAxis> > aa2(aa1);
|
---|
[21] | 696 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
|
---|
[455] | 697 |
|
---|
[206] | 698 | ArrayAccessor<Float, Axis<asap::BeamAxis> > va(spectrum);
|
---|
| 699 | for (ArrayAccessor<Float, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) {
|
---|
[21] | 700 | (*va) = (*i);
|
---|
| 701 | va++;
|
---|
| 702 | }
|
---|
| 703 | }
|
---|
[418] | 704 |
|
---|
| 705 |
|
---|
[89] | 706 | /*
|
---|
[68] | 707 | void SDMemTable::getMask(Vector<Bool>& mask, Int whichRow) const {
|
---|
[21] | 708 | Array<uChar> arr;
|
---|
[322] | 709 | flagsCol_.get(whichRow, arr);
|
---|
[21] | 710 | mask.resize(arr.shape()(3));
|
---|
| 711 |
|
---|
[206] | 712 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > aa0(arr);
|
---|
[21] | 713 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
|
---|
[206] | 714 | ArrayAccessor<uChar, Axis<asap::IFAxis> > aa1(aa0);
|
---|
[21] | 715 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
|
---|
[206] | 716 | ArrayAccessor<uChar, Axis<asap::PolAxis> > aa2(aa1);
|
---|
[21] | 717 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
|
---|
| 718 |
|
---|
| 719 | Bool useUserMask = ( chanMask_.size() == arr.shape()(3) );
|
---|
[89] | 720 |
|
---|
[206] | 721 | ArrayAccessor<Bool, Axis<asap::BeamAxis> > va(mask);
|
---|
[21] | 722 | std::vector<bool> tmp;
|
---|
| 723 | tmp = chanMask_; // WHY the fxxx do I have to make a copy here. The
|
---|
[89] | 724 | // iterator should work on chanMask_??
|
---|
[21] | 725 | std::vector<bool>::iterator miter;
|
---|
| 726 | miter = tmp.begin();
|
---|
| 727 |
|
---|
[206] | 728 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) {
|
---|
[21] | 729 | bool out =!static_cast<bool>(*i);
|
---|
| 730 | if (useUserMask) {
|
---|
| 731 | out = out && (*miter);
|
---|
| 732 | miter++;
|
---|
| 733 | }
|
---|
| 734 | (*va) = out;
|
---|
| 735 | va++;
|
---|
[89] | 736 | }
|
---|
[21] | 737 | }
|
---|
[89] | 738 | */
|
---|
[447] | 739 |
|
---|
[455] | 740 | MaskedArray<Float> SDMemTable::rowAsMaskedArray(uInt whichRow,
|
---|
| 741 | Bool toStokes) const
|
---|
[164] | 742 | {
|
---|
[455] | 743 | // Get flags
|
---|
[441] | 744 | Array<uChar> farr;
|
---|
| 745 | flagsCol_.get(whichRow, farr);
|
---|
| 746 |
|
---|
[455] | 747 | // Get data and convert mask to Bool
|
---|
[2] | 748 | Array<Float> arr;
|
---|
[441] | 749 | Array<Bool> mask;
|
---|
[439] | 750 | if (toStokes) {
|
---|
| 751 | stokesCol_.get(whichRow, arr);
|
---|
[455] | 752 |
|
---|
[441] | 753 | Array<Bool> tMask(farr.shape());
|
---|
| 754 | convertArray(tMask, farr);
|
---|
[462] | 755 | mask = SDPolUtil::stokesData (tMask, True);
|
---|
[439] | 756 | } else {
|
---|
| 757 | specCol_.get(whichRow, arr);
|
---|
[441] | 758 | mask.resize(farr.shape());
|
---|
| 759 | convertArray(mask, farr);
|
---|
[439] | 760 | }
|
---|
[455] | 761 |
|
---|
[447] | 762 | return MaskedArray<Float>(arr,!mask);
|
---|
[2] | 763 | }
|
---|
| 764 |
|
---|
[206] | 765 | Float SDMemTable::getTsys(Int whichRow) const
|
---|
| 766 | {
|
---|
[2] | 767 | Array<Float> arr;
|
---|
[322] | 768 | tsCol_.get(whichRow, arr);
|
---|
[2] | 769 | Float out;
|
---|
[455] | 770 |
|
---|
[2] | 771 | IPosition ip(arr.shape());
|
---|
[418] | 772 | ip(asap::BeamAxis) = beamSel_;
|
---|
| 773 | ip(asap::IFAxis) = IFSel_;
|
---|
| 774 | ip(asap::PolAxis) = polSel_;
|
---|
| 775 | ip(asap::ChanAxis)=0; // First channel only
|
---|
[455] | 776 |
|
---|
[2] | 777 | out = arr(ip);
|
---|
| 778 | return out;
|
---|
| 779 | }
|
---|
| 780 |
|
---|
[281] | 781 | MDirection SDMemTable::getDirection(Int whichRow, Bool refBeam) const
|
---|
[206] | 782 | {
|
---|
[212] | 783 | MDirection::Types mdr = getDirectionReference();
|
---|
[206] | 784 | Array<Double> posit;
|
---|
[322] | 785 | dirCol_.get(whichRow,posit);
|
---|
[206] | 786 | Vector<Double> wpos(2);
|
---|
[380] | 787 | Int rb;
|
---|
| 788 | rbeamCol_.get(whichRow,rb);
|
---|
[206] | 789 | wpos[0] = posit(IPosition(2,beamSel_,0));
|
---|
| 790 | wpos[1] = posit(IPosition(2,beamSel_,1));
|
---|
[380] | 791 | if (refBeam && rb > -1) { // use refBeam instead if it exists
|
---|
| 792 | wpos[0] = posit(IPosition(2,rb,0));
|
---|
| 793 | wpos[1] = posit(IPosition(2,rb,1));
|
---|
| 794 | }
|
---|
| 795 |
|
---|
[206] | 796 | Quantum<Double> lon(wpos[0],Unit(String("rad")));
|
---|
| 797 | Quantum<Double> lat(wpos[1],Unit(String("rad")));
|
---|
[286] | 798 | return MDirection(lon, lat, mdr);
|
---|
[206] | 799 | }
|
---|
[39] | 800 |
|
---|
[380] | 801 | MEpoch SDMemTable::getEpoch(Int whichRow) const
|
---|
[206] | 802 | {
|
---|
[286] | 803 | MEpoch::Types met = getTimeReference();
|
---|
[455] | 804 |
|
---|
[286] | 805 | Double obstime;
|
---|
[322] | 806 | timeCol_.get(whichRow,obstime);
|
---|
[286] | 807 | MVEpoch tm2(Quantum<Double>(obstime, Unit(String("d"))));
|
---|
| 808 | return MEpoch(tm2, met);
|
---|
| 809 | }
|
---|
| 810 |
|
---|
| 811 | MPosition SDMemTable::getAntennaPosition () const
|
---|
| 812 | {
|
---|
| 813 | Vector<Double> antpos;
|
---|
| 814 | table_.keywordSet().get("AntennaPosition", antpos);
|
---|
| 815 | MVPosition mvpos(antpos(0),antpos(1),antpos(2));
|
---|
| 816 | return MPosition(mvpos);
|
---|
| 817 | }
|
---|
| 818 |
|
---|
| 819 |
|
---|
[347] | 820 | SpectralCoordinate SDMemTable::getSpectralCoordinate(uInt freqID) const
|
---|
[286] | 821 | {
|
---|
[206] | 822 |
|
---|
[39] | 823 | Table t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
[347] | 824 | if (freqID> t.nrow() ) {
|
---|
| 825 | throw(AipsError("SDMemTable::getSpectralCoordinate - freqID out of range"));
|
---|
[39] | 826 | }
|
---|
[89] | 827 |
|
---|
[39] | 828 | Double rp,rv,inc;
|
---|
| 829 | String rf;
|
---|
| 830 | ROScalarColumn<Double> rpc(t, "REFPIX");
|
---|
| 831 | ROScalarColumn<Double> rvc(t, "REFVAL");
|
---|
| 832 | ROScalarColumn<Double> incc(t, "INCREMENT");
|
---|
[105] | 833 | t.keywordSet().get("BASEREFFRAME",rf);
|
---|
[89] | 834 |
|
---|
[455] | 835 | // Create SpectralCoordinate (units Hz)
|
---|
[39] | 836 | MFrequency::Types mft;
|
---|
| 837 | if (!MFrequency::getType(mft, rf)) {
|
---|
| 838 | cerr << "Frequency type unknown assuming TOPO" << endl;
|
---|
[89] | 839 | mft = MFrequency::TOPO;
|
---|
| 840 | }
|
---|
[347] | 841 | rpc.get(freqID, rp);
|
---|
| 842 | rvc.get(freqID, rv);
|
---|
| 843 | incc.get(freqID, inc);
|
---|
[455] | 844 |
|
---|
[39] | 845 | SpectralCoordinate spec(mft,rv,inc,rp);
|
---|
[286] | 846 | return spec;
|
---|
| 847 | }
|
---|
| 848 |
|
---|
| 849 |
|
---|
[455] | 850 | SpectralCoordinate SDMemTable::getSpectralCoordinate(uInt freqID,
|
---|
| 851 | uInt restFreqID,
|
---|
[386] | 852 | uInt whichRow) const
|
---|
[286] | 853 | {
|
---|
[455] | 854 |
|
---|
| 855 | // Create basic SC
|
---|
| 856 | SpectralCoordinate spec = getSpectralCoordinate (freqID);
|
---|
[385] | 857 |
|
---|
[286] | 858 | Table t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
| 859 |
|
---|
[455] | 860 | // Set rest frequency
|
---|
[386] | 861 | Vector<Double> restFreqIDs;
|
---|
| 862 | t.keywordSet().get("RESTFREQS",restFreqIDs);
|
---|
[455] | 863 | if (restFreqID < restFreqIDs.nelements()) { // Should always be true
|
---|
[386] | 864 | spec.setRestFrequency(restFreqIDs(restFreqID),True);
|
---|
[286] | 865 | }
|
---|
| 866 |
|
---|
[455] | 867 | // Set up frame conversion layer
|
---|
[286] | 868 | String frm;
|
---|
| 869 | t.keywordSet().get("REFFRAME",frm);
|
---|
| 870 | if (frm == "") frm = "TOPO";
|
---|
| 871 | MFrequency::Types mtype;
|
---|
| 872 | if (!MFrequency::getType(mtype, frm)) {
|
---|
[455] | 873 | // Should never happen
|
---|
| 874 | cerr << "Frequency type unknown assuming TOPO" << endl;
|
---|
[286] | 875 | mtype = MFrequency::TOPO;
|
---|
| 876 | }
|
---|
| 877 |
|
---|
[455] | 878 | // Set reference frame conversion (requires row)
|
---|
[401] | 879 | MDirection dir = getDirection(whichRow);
|
---|
[286] | 880 | MEpoch epoch = getEpoch(whichRow);
|
---|
| 881 | MPosition pos = getAntennaPosition();
|
---|
[455] | 882 |
|
---|
[401] | 883 | if (!spec.setReferenceConversion(mtype,epoch,pos,dir)) {
|
---|
[286] | 884 | throw(AipsError("Couldn't convert frequency frame."));
|
---|
| 885 | }
|
---|
| 886 |
|
---|
[455] | 887 | // Now velocity conversion if appropriate
|
---|
[286] | 888 | String unitStr;
|
---|
| 889 | t.keywordSet().get("UNIT",unitStr);
|
---|
[455] | 890 |
|
---|
[286] | 891 | String dpl;
|
---|
| 892 | t.keywordSet().get("DOPPLER",dpl);
|
---|
| 893 | MDoppler::Types dtype;
|
---|
| 894 | MDoppler::getType(dtype, dpl);
|
---|
| 895 |
|
---|
[455] | 896 | // Only set velocity unit if non-blank and non-Hz
|
---|
[286] | 897 | if (!unitStr.empty()) {
|
---|
| 898 | Unit unitU(unitStr);
|
---|
| 899 | if (unitU==Unit("Hz")) {
|
---|
| 900 | } else {
|
---|
| 901 | spec.setVelocity(unitStr, dtype);
|
---|
| 902 | }
|
---|
| 903 | }
|
---|
[455] | 904 |
|
---|
[39] | 905 | return spec;
|
---|
| 906 | }
|
---|
| 907 |
|
---|
[286] | 908 |
|
---|
[89] | 909 | Bool SDMemTable::setCoordinate(const SpectralCoordinate& speccord,
|
---|
[347] | 910 | uInt freqID) {
|
---|
[50] | 911 | Table t = table_.rwKeywordSet().asTable("FREQUENCIES");
|
---|
[347] | 912 | if (freqID > t.nrow() ) {
|
---|
[89] | 913 | throw(AipsError("SDMemTable::setCoordinate - coord no out of range"));
|
---|
[50] | 914 | }
|
---|
| 915 | ScalarColumn<Double> rpc(t, "REFPIX");
|
---|
| 916 | ScalarColumn<Double> rvc(t, "REFVAL");
|
---|
| 917 | ScalarColumn<Double> incc(t, "INCREMENT");
|
---|
[89] | 918 |
|
---|
[347] | 919 | rpc.put(freqID, speccord.referencePixel()[0]);
|
---|
| 920 | rvc.put(freqID, speccord.referenceValue()[0]);
|
---|
| 921 | incc.put(freqID, speccord.increment()[0]);
|
---|
[50] | 922 |
|
---|
| 923 | return True;
|
---|
| 924 | }
|
---|
| 925 |
|
---|
[89] | 926 | Int SDMemTable::nCoordinates() const
|
---|
| 927 | {
|
---|
| 928 | return table_.keywordSet().asTable("FREQUENCIES").nrow();
|
---|
| 929 | }
|
---|
[50] | 930 |
|
---|
[89] | 931 |
|
---|
[251] | 932 | std::vector<double> SDMemTable::getRestFreqs() const
|
---|
| 933 | {
|
---|
| 934 | Table t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
| 935 | Vector<Double> tvec;
|
---|
| 936 | t.keywordSet().get("RESTFREQS",tvec);
|
---|
| 937 | std::vector<double> stlout;
|
---|
| 938 | tvec.tovector(stlout);
|
---|
| 939 | return stlout;
|
---|
| 940 | }
|
---|
| 941 |
|
---|
[206] | 942 | bool SDMemTable::putSDFreqTable(const SDFrequencyTable& sdft)
|
---|
| 943 | {
|
---|
[39] | 944 | TableDesc td("", "1", TableDesc::Scratch);
|
---|
| 945 | td.addColumn(ScalarColumnDesc<Double>("REFPIX"));
|
---|
| 946 | td.addColumn(ScalarColumnDesc<Double>("REFVAL"));
|
---|
| 947 | td.addColumn(ScalarColumnDesc<Double>("INCREMENT"));
|
---|
| 948 | SetupNewTable aNewTab("freqs", td, Table::New);
|
---|
| 949 | Table aTable (aNewTab, Table::Memory, sdft.length());
|
---|
| 950 | ScalarColumn<Double> sc0(aTable, "REFPIX");
|
---|
| 951 | ScalarColumn<Double> sc1(aTable, "REFVAL");
|
---|
| 952 | ScalarColumn<Double> sc2(aTable, "INCREMENT");
|
---|
| 953 | for (uInt i=0; i < sdft.length(); ++i) {
|
---|
| 954 | sc0.put(i,sdft.referencePixel(i));
|
---|
| 955 | sc1.put(i,sdft.referenceValue(i));
|
---|
| 956 | sc2.put(i,sdft.increment(i));
|
---|
| 957 | }
|
---|
[105] | 958 | String rf = sdft.refFrame();
|
---|
| 959 | if (rf.contains("TOPO")) rf = "TOPO";
|
---|
| 960 |
|
---|
| 961 | aTable.rwKeywordSet().define("BASEREFFRAME", rf);
|
---|
| 962 | aTable.rwKeywordSet().define("REFFRAME", rf);
|
---|
[39] | 963 | aTable.rwKeywordSet().define("EQUINOX", sdft.equinox());
|
---|
[105] | 964 | aTable.rwKeywordSet().define("UNIT", String(""));
|
---|
| 965 | aTable.rwKeywordSet().define("DOPPLER", String("RADIO"));
|
---|
[89] | 966 | Vector<Double> rfvec;
|
---|
[206] | 967 | String rfunit;
|
---|
| 968 | sdft.restFrequencies(rfvec,rfunit);
|
---|
| 969 | Quantum<Vector<Double> > q(rfvec, rfunit);
|
---|
| 970 | rfvec.resize();
|
---|
| 971 | rfvec = q.getValue("Hz");
|
---|
[89] | 972 | aTable.rwKeywordSet().define("RESTFREQS", rfvec);
|
---|
[455] | 973 | table_.rwKeywordSet().defineTable("FREQUENCIES", aTable);
|
---|
| 974 | return true;
|
---|
[39] | 975 | }
|
---|
| 976 |
|
---|
[455] | 977 | bool SDMemTable::putSDFitTable(const SDFitTable& sdft)
|
---|
| 978 | {
|
---|
| 979 | TableDesc td("", "1", TableDesc::Scratch);
|
---|
| 980 | td.addColumn(ArrayColumnDesc<String>("FUNCTIONS"));
|
---|
| 981 | td.addColumn(ArrayColumnDesc<Int>("COMPONENTS"));
|
---|
| 982 | td.addColumn(ArrayColumnDesc<Double>("PARAMETERS"));
|
---|
| 983 | td.addColumn(ArrayColumnDesc<Bool>("PARMASK"));
|
---|
[465] | 984 | td.addColumn(ArrayColumnDesc<String>("FRAMEINFO"));
|
---|
[455] | 985 | SetupNewTable aNewTab("fits", td, Table::New);
|
---|
| 986 | Table aTable(aNewTab, Table::Memory);
|
---|
| 987 | ArrayColumn<String> sc0(aTable, "FUNCTIONS");
|
---|
| 988 | ArrayColumn<Int> sc1(aTable, "COMPONENTS");
|
---|
| 989 | ArrayColumn<Double> sc2(aTable, "PARAMETERS");
|
---|
| 990 | ArrayColumn<Bool> sc3(aTable, "PARMASK");
|
---|
[465] | 991 | ArrayColumn<String> sc4(aTable, "FRAMEINFO");
|
---|
[455] | 992 | for (uInt i; i<sdft.length(); ++i) {
|
---|
[465] | 993 | const Vector<Double>& parms = sdft.getParameters(i);
|
---|
| 994 | const Vector<Bool>& parmask = sdft.getParameterMask(i);
|
---|
| 995 | const Vector<String>& funcs = sdft.getFunctions(i);
|
---|
| 996 | const Vector<Int>& comps = sdft.getComponents(i);
|
---|
| 997 | const Vector<String>& finfo = sdft.getFrameInfo(i);
|
---|
[455] | 998 | sc0.put(i,funcs);
|
---|
| 999 | sc1.put(i,comps);
|
---|
| 1000 | sc3.put(i,parmask);
|
---|
| 1001 | sc2.put(i,parms);
|
---|
[465] | 1002 | sc4.put(i,finfo);
|
---|
[455] | 1003 | }
|
---|
| 1004 | table_.rwKeywordSet().defineTable("FITS", aTable);
|
---|
| 1005 | return true;
|
---|
| 1006 | }
|
---|
| 1007 |
|
---|
| 1008 | SDFitTable SDMemTable::getSDFitTable() const
|
---|
| 1009 | {
|
---|
| 1010 | const Table& t = table_.keywordSet().asTable("FITS");
|
---|
| 1011 | Vector<Double> parms;
|
---|
| 1012 | Vector<Bool> parmask;
|
---|
| 1013 | Vector<String> funcs;
|
---|
[465] | 1014 | Vector<String> finfo;
|
---|
[455] | 1015 | Vector<Int> comps;
|
---|
| 1016 | ROArrayColumn<Double> parmsCol(t, "PARAMETERS");
|
---|
| 1017 | ROArrayColumn<Bool> parmaskCol(t, "PARMASK");
|
---|
| 1018 | ROArrayColumn<Int> compsCol(t, "COMPONENTS");
|
---|
| 1019 | ROArrayColumn<String> funcsCol(t, "FUNCTIONS");
|
---|
[465] | 1020 | ROArrayColumn<String> finfoCol(t, "FRAMEINFO");
|
---|
[455] | 1021 | uInt n = t.nrow();
|
---|
[465] | 1022 | SDFitTable sdft;
|
---|
[455] | 1023 | for (uInt i=0; i<n; ++i) {
|
---|
| 1024 | parmaskCol.get(i, parmask);
|
---|
| 1025 | parmsCol.get(i, parms);
|
---|
| 1026 | funcsCol.get(i, funcs);
|
---|
| 1027 | compsCol.get(i, comps);
|
---|
[465] | 1028 | finfoCol.get(i, finfo);
|
---|
| 1029 | sdft.addFit(parms, parmask, funcs, comps, finfo);
|
---|
[455] | 1030 | }
|
---|
| 1031 | return sdft;
|
---|
| 1032 | }
|
---|
| 1033 |
|
---|
[465] | 1034 | SDFitTable SDMemTable::getSDFitTable(uInt whichRow) const {
|
---|
| 1035 | Array<Int> fitid;
|
---|
| 1036 | fitCol_.get(whichRow, fitid);
|
---|
| 1037 | if (fitid.nelements() == 0) return SDFitTable();
|
---|
[455] | 1038 |
|
---|
[465] | 1039 | IPosition shp = fitid.shape();
|
---|
| 1040 | IPosition start(4, beamSel_, IFSel_, polSel_,0);
|
---|
| 1041 | IPosition end(4, beamSel_, IFSel_, polSel_, shp[3]-1);
|
---|
| 1042 |
|
---|
| 1043 | // reform the output array slice to be of dim=1
|
---|
| 1044 | Vector<Int> tmp = (fitid(start, end)).reform(IPosition(1,shp[3]));
|
---|
| 1045 |
|
---|
| 1046 | const Table& t = table_.keywordSet().asTable("FITS");
|
---|
| 1047 | Vector<Double> parms;
|
---|
| 1048 | Vector<Bool> parmask;
|
---|
| 1049 | Vector<String> funcs;
|
---|
| 1050 | Vector<String> finfo;
|
---|
| 1051 | Vector<Int> comps;
|
---|
| 1052 | ROArrayColumn<Double> parmsCol(t, "PARAMETERS");
|
---|
| 1053 | ROArrayColumn<Bool> parmaskCol(t, "PARMASK");
|
---|
| 1054 | ROArrayColumn<Int> compsCol(t, "COMPONENTS");
|
---|
| 1055 | ROArrayColumn<String> funcsCol(t, "FUNCTIONS");
|
---|
| 1056 | ROArrayColumn<String> finfoCol(t, "FRAMEINFO");
|
---|
| 1057 | if (t.nrow() == 0) return SDFitTable();
|
---|
| 1058 | SDFitTable sdft;
|
---|
| 1059 | Int k=-1;
|
---|
| 1060 | for (uInt i=0; i< tmp.nelements(); ++i) {
|
---|
| 1061 | k = tmp[i];
|
---|
| 1062 | if ( k > -1 && k < t.nrow() ) {
|
---|
| 1063 | parms.resize();
|
---|
| 1064 | parmsCol.get(k, parms);
|
---|
| 1065 | parmask.resize();
|
---|
| 1066 | parmaskCol.get(k, parmask);
|
---|
| 1067 | funcs.resize();
|
---|
| 1068 | funcsCol.get(k, funcs);
|
---|
| 1069 | comps.resize();
|
---|
| 1070 | compsCol.get(k, comps);
|
---|
| 1071 | finfo.resize();
|
---|
| 1072 | finfoCol.get(k, finfo);
|
---|
| 1073 | sdft.addFit(parms, parmask, funcs, comps, finfo);
|
---|
| 1074 | }
|
---|
| 1075 | }
|
---|
| 1076 | return sdft;
|
---|
| 1077 | }
|
---|
| 1078 |
|
---|
[455] | 1079 | void SDMemTable::addFit(uInt whichRow,
|
---|
| 1080 | const Vector<Double>& p, const Vector<Bool>& m,
|
---|
| 1081 | const Vector<String>& f, const Vector<Int>& c)
|
---|
| 1082 | {
|
---|
| 1083 | if (whichRow >= nRow()) {
|
---|
| 1084 | throw(AipsError("Specified row out of range"));
|
---|
| 1085 | }
|
---|
| 1086 | Table t = table_.keywordSet().asTable("FITS");
|
---|
| 1087 | uInt nrow = t.nrow();
|
---|
| 1088 | t.addRow();
|
---|
| 1089 | ArrayColumn<Double> parmsCol(t, "PARAMETERS");
|
---|
| 1090 | ArrayColumn<Bool> parmaskCol(t, "PARMASK");
|
---|
| 1091 | ArrayColumn<Int> compsCol(t, "COMPONENTS");
|
---|
| 1092 | ArrayColumn<String> funcsCol(t, "FUNCTIONS");
|
---|
[465] | 1093 | ArrayColumn<String> finfoCol(t, "FRAMEINFO");
|
---|
[455] | 1094 | parmsCol.put(nrow, p);
|
---|
| 1095 | parmaskCol.put(nrow, m);
|
---|
| 1096 | compsCol.put(nrow, c);
|
---|
| 1097 | funcsCol.put(nrow, f);
|
---|
[465] | 1098 | Vector<String> fi = mathutil::toVectorString(getCoordInfo());
|
---|
| 1099 | finfoCol.put(nrow, fi);
|
---|
[455] | 1100 |
|
---|
| 1101 | Array<Int> fitarr;
|
---|
| 1102 | fitCol_.get(whichRow, fitarr);
|
---|
| 1103 |
|
---|
| 1104 | Array<Int> newarr; // The new Array containing the fitid
|
---|
| 1105 | Int pos =-1; // The fitid position in the array
|
---|
| 1106 | if ( fitarr.nelements() == 0 ) { // no fits at all in this row
|
---|
| 1107 | Array<Int> arr(IPosition(4,nBeam(),nIF(),nPol(),1));
|
---|
| 1108 | arr = -1;
|
---|
| 1109 | newarr.reference(arr);
|
---|
| 1110 | pos = 0;
|
---|
| 1111 | } else {
|
---|
| 1112 | IPosition shp = fitarr.shape();
|
---|
| 1113 | IPosition start(4, beamSel_, IFSel_, polSel_,0);
|
---|
| 1114 | IPosition end(4, beamSel_, IFSel_, polSel_, shp[3]-1);
|
---|
| 1115 | // reform the output array slice to be of dim=1
|
---|
| 1116 | Array<Int> tmp = (fitarr(start, end)).reform(IPosition(1,shp[3]));
|
---|
| 1117 | const Vector<Int>& fits = tmp;
|
---|
| 1118 | VectorSTLIterator<Int> it(fits);
|
---|
| 1119 | Int i = 0;
|
---|
| 1120 | while (it != fits.end()) {
|
---|
| 1121 | if (*it == -1) {
|
---|
| 1122 | pos = i;
|
---|
| 1123 | break;
|
---|
| 1124 | }
|
---|
| 1125 | ++i;
|
---|
| 1126 | ++it;
|
---|
| 1127 | };
|
---|
| 1128 | }
|
---|
| 1129 | if (pos == -1) {
|
---|
| 1130 | mathutil::extendLastArrayAxis(newarr,fitarr, -1);
|
---|
| 1131 | pos = fitarr.shape()[3]; // the new element position
|
---|
| 1132 | } else {
|
---|
| 1133 | if (fitarr.nelements() > 0)
|
---|
| 1134 | newarr = fitarr;
|
---|
| 1135 | }
|
---|
| 1136 | newarr(IPosition(4, beamSel_, IFSel_, polSel_, pos)) = Int(nrow);
|
---|
| 1137 | fitCol_.put(whichRow, newarr);
|
---|
| 1138 |
|
---|
| 1139 | }
|
---|
| 1140 |
|
---|
[206] | 1141 | SDFrequencyTable SDMemTable::getSDFreqTable() const
|
---|
| 1142 | {
|
---|
[251] | 1143 | const Table& t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
[39] | 1144 | SDFrequencyTable sdft;
|
---|
[306] | 1145 |
|
---|
[455] | 1146 | // Add refpix/refval/incr. What are the units ? Hz I suppose
|
---|
| 1147 | // but it's nowhere described...
|
---|
[306] | 1148 | Vector<Double> refPix, refVal, incr;
|
---|
| 1149 | ScalarColumn<Double> refPixCol(t, "REFPIX");
|
---|
| 1150 | ScalarColumn<Double> refValCol(t, "REFVAL");
|
---|
| 1151 | ScalarColumn<Double> incrCol(t, "INCREMENT");
|
---|
| 1152 | refPix = refPixCol.getColumn();
|
---|
| 1153 | refVal = refValCol.getColumn();
|
---|
| 1154 | incr = incrCol.getColumn();
|
---|
[455] | 1155 |
|
---|
[306] | 1156 | uInt n = refPix.nelements();
|
---|
| 1157 | for (uInt i=0; i<n; i++) {
|
---|
| 1158 | sdft.addFrequency(refPix[i], refVal[i], incr[i]);
|
---|
| 1159 | }
|
---|
| 1160 |
|
---|
[455] | 1161 | // Frequency reference frame. I don't know if this
|
---|
| 1162 | // is the correct frame. It might be 'REFFRAME'
|
---|
| 1163 | // rather than 'BASEREFFRAME' ?
|
---|
[306] | 1164 | String baseFrame;
|
---|
| 1165 | t.keywordSet().get("BASEREFFRAME",baseFrame);
|
---|
| 1166 | sdft.setRefFrame(baseFrame);
|
---|
| 1167 |
|
---|
[455] | 1168 | // Equinox
|
---|
[306] | 1169 | Float equinox;
|
---|
| 1170 | t.keywordSet().get("EQUINOX", equinox);
|
---|
| 1171 | sdft.setEquinox(equinox);
|
---|
| 1172 |
|
---|
[455] | 1173 | // Rest Frequency
|
---|
[306] | 1174 | Vector<Double> restFreqs;
|
---|
| 1175 | t.keywordSet().get("RESTFREQS", restFreqs);
|
---|
| 1176 | for (uInt i=0; i<restFreqs.nelements(); i++) {
|
---|
| 1177 | sdft.addRestFrequency(restFreqs[i]);
|
---|
| 1178 | }
|
---|
| 1179 | sdft.setRestFrequencyUnit(String("Hz"));
|
---|
[455] | 1180 |
|
---|
[39] | 1181 | return sdft;
|
---|
| 1182 | }
|
---|
| 1183 |
|
---|
[206] | 1184 | bool SDMemTable::putSDContainer(const SDContainer& sdc)
|
---|
| 1185 | {
|
---|
[2] | 1186 | uInt rno = table_.nrow();
|
---|
| 1187 | table_.addRow();
|
---|
[455] | 1188 |
|
---|
[322] | 1189 | timeCol_.put(rno, sdc.timestamp);
|
---|
| 1190 | srcnCol_.put(rno, sdc.sourcename);
|
---|
| 1191 | fldnCol_.put(rno, sdc.fieldname);
|
---|
| 1192 | specCol_.put(rno, sdc.getSpectrum());
|
---|
| 1193 | flagsCol_.put(rno, sdc.getFlags());
|
---|
| 1194 | tsCol_.put(rno, sdc.getTsys());
|
---|
| 1195 | scanCol_.put(rno, sdc.scanid);
|
---|
| 1196 | integrCol_.put(rno, sdc.interval);
|
---|
| 1197 | freqidCol_.put(rno, sdc.getFreqMap());
|
---|
[386] | 1198 | restfreqidCol_.put(rno, sdc.getRestFreqMap());
|
---|
[322] | 1199 | dirCol_.put(rno, sdc.getDirection());
|
---|
| 1200 | rbeamCol_.put(rno, sdc.refbeam);
|
---|
| 1201 | tcalCol_.put(rno, sdc.tcal);
|
---|
| 1202 | tcaltCol_.put(rno, sdc.tcaltime);
|
---|
| 1203 | azCol_.put(rno, sdc.azimuth);
|
---|
| 1204 | elCol_.put(rno, sdc.elevation);
|
---|
| 1205 | paraCol_.put(rno, sdc.parangle);
|
---|
[455] | 1206 | fitCol_.put(rno, sdc.getFitMap());
|
---|
[2] | 1207 | return true;
|
---|
| 1208 | }
|
---|
[18] | 1209 |
|
---|
[206] | 1210 | SDContainer SDMemTable::getSDContainer(uInt whichRow) const
|
---|
| 1211 | {
|
---|
[21] | 1212 | SDContainer sdc(nBeam(),nIF(),nPol(),nChan());
|
---|
[322] | 1213 | timeCol_.get(whichRow, sdc.timestamp);
|
---|
| 1214 | srcnCol_.get(whichRow, sdc.sourcename);
|
---|
| 1215 | integrCol_.get(whichRow, sdc.interval);
|
---|
| 1216 | scanCol_.get(whichRow, sdc.scanid);
|
---|
| 1217 | fldnCol_.get(whichRow, sdc.fieldname);
|
---|
| 1218 | rbeamCol_.get(whichRow, sdc.refbeam);
|
---|
| 1219 | azCol_.get(whichRow, sdc.azimuth);
|
---|
| 1220 | elCol_.get(whichRow, sdc.elevation);
|
---|
| 1221 | paraCol_.get(whichRow, sdc.parangle);
|
---|
[105] | 1222 | Vector<Float> tc;
|
---|
[322] | 1223 | tcalCol_.get(whichRow, tc);
|
---|
[105] | 1224 | sdc.tcal[0] = tc[0];sdc.tcal[1] = tc[1];
|
---|
[322] | 1225 | tcaltCol_.get(whichRow, sdc.tcaltime);
|
---|
[455] | 1226 |
|
---|
[21] | 1227 | Array<Float> spectrum;
|
---|
| 1228 | Array<Float> tsys;
|
---|
| 1229 | Array<uChar> flagtrum;
|
---|
[39] | 1230 | Vector<uInt> fmap;
|
---|
[78] | 1231 | Array<Double> direction;
|
---|
[455] | 1232 | Array<Int> fits;
|
---|
| 1233 |
|
---|
[322] | 1234 | specCol_.get(whichRow, spectrum);
|
---|
[21] | 1235 | sdc.putSpectrum(spectrum);
|
---|
[322] | 1236 | flagsCol_.get(whichRow, flagtrum);
|
---|
[21] | 1237 | sdc.putFlags(flagtrum);
|
---|
[322] | 1238 | tsCol_.get(whichRow, tsys);
|
---|
[21] | 1239 | sdc.putTsys(tsys);
|
---|
[322] | 1240 | freqidCol_.get(whichRow, fmap);
|
---|
[39] | 1241 | sdc.putFreqMap(fmap);
|
---|
[386] | 1242 | restfreqidCol_.get(whichRow, fmap);
|
---|
| 1243 | sdc.putRestFreqMap(fmap);
|
---|
[322] | 1244 | dirCol_.get(whichRow, direction);
|
---|
[78] | 1245 | sdc.putDirection(direction);
|
---|
[455] | 1246 | fitCol_.get(whichRow, fits);
|
---|
| 1247 | sdc.putFitMap(fits);
|
---|
[21] | 1248 | return sdc;
|
---|
| 1249 | }
|
---|
[78] | 1250 |
|
---|
[206] | 1251 | bool SDMemTable::putSDHeader(const SDHeader& sdh)
|
---|
| 1252 | {
|
---|
[18] | 1253 | table_.rwKeywordSet().define("nIF", sdh.nif);
|
---|
| 1254 | table_.rwKeywordSet().define("nBeam", sdh.nbeam);
|
---|
| 1255 | table_.rwKeywordSet().define("nPol", sdh.npol);
|
---|
| 1256 | table_.rwKeywordSet().define("nChan", sdh.nchan);
|
---|
| 1257 | table_.rwKeywordSet().define("Observer", sdh.observer);
|
---|
| 1258 | table_.rwKeywordSet().define("Project", sdh.project);
|
---|
| 1259 | table_.rwKeywordSet().define("Obstype", sdh.obstype);
|
---|
| 1260 | table_.rwKeywordSet().define("AntennaName", sdh.antennaname);
|
---|
| 1261 | table_.rwKeywordSet().define("AntennaPosition", sdh.antennaposition);
|
---|
| 1262 | table_.rwKeywordSet().define("Equinox", sdh.equinox);
|
---|
| 1263 | table_.rwKeywordSet().define("FreqRefFrame", sdh.freqref);
|
---|
| 1264 | table_.rwKeywordSet().define("FreqRefVal", sdh.reffreq);
|
---|
| 1265 | table_.rwKeywordSet().define("Bandwidth", sdh.bandwidth);
|
---|
| 1266 | table_.rwKeywordSet().define("UTC", sdh.utc);
|
---|
[206] | 1267 | table_.rwKeywordSet().define("FluxUnit", sdh.fluxunit);
|
---|
| 1268 | table_.rwKeywordSet().define("Epoch", sdh.epoch);
|
---|
[18] | 1269 | return true;
|
---|
[50] | 1270 | }
|
---|
[21] | 1271 |
|
---|
[206] | 1272 | SDHeader SDMemTable::getSDHeader() const
|
---|
| 1273 | {
|
---|
[21] | 1274 | SDHeader sdh;
|
---|
| 1275 | table_.keywordSet().get("nBeam",sdh.nbeam);
|
---|
| 1276 | table_.keywordSet().get("nIF",sdh.nif);
|
---|
| 1277 | table_.keywordSet().get("nPol",sdh.npol);
|
---|
| 1278 | table_.keywordSet().get("nChan",sdh.nchan);
|
---|
| 1279 | table_.keywordSet().get("Observer", sdh.observer);
|
---|
| 1280 | table_.keywordSet().get("Project", sdh.project);
|
---|
| 1281 | table_.keywordSet().get("Obstype", sdh.obstype);
|
---|
| 1282 | table_.keywordSet().get("AntennaName", sdh.antennaname);
|
---|
| 1283 | table_.keywordSet().get("AntennaPosition", sdh.antennaposition);
|
---|
| 1284 | table_.keywordSet().get("Equinox", sdh.equinox);
|
---|
| 1285 | table_.keywordSet().get("FreqRefFrame", sdh.freqref);
|
---|
| 1286 | table_.keywordSet().get("FreqRefVal", sdh.reffreq);
|
---|
| 1287 | table_.keywordSet().get("Bandwidth", sdh.bandwidth);
|
---|
| 1288 | table_.keywordSet().get("UTC", sdh.utc);
|
---|
[206] | 1289 | table_.keywordSet().get("FluxUnit", sdh.fluxunit);
|
---|
| 1290 | table_.keywordSet().get("Epoch", sdh.epoch);
|
---|
[21] | 1291 | return sdh;
|
---|
[18] | 1292 | }
|
---|
[206] | 1293 | void SDMemTable::makePersistent(const std::string& filename)
|
---|
[483] | 1294 | {
|
---|
[2] | 1295 | table_.deepCopy(filename,Table::New);
|
---|
[483] | 1296 |
|
---|
[2] | 1297 | }
|
---|
| 1298 |
|
---|
[89] | 1299 | Int SDMemTable::nScan() const {
|
---|
[50] | 1300 | Int n = 0;
|
---|
| 1301 | Int previous = -1;Int current=0;
|
---|
[322] | 1302 | for (uInt i=0; i< scanCol_.nrow();i++) {
|
---|
| 1303 | scanCol_.getScalar(i,current);
|
---|
[50] | 1304 | if (previous != current) {
|
---|
[89] | 1305 | previous = current;
|
---|
[50] | 1306 | n++;
|
---|
| 1307 | }
|
---|
| 1308 | }
|
---|
| 1309 | return n;
|
---|
| 1310 | }
|
---|
| 1311 |
|
---|
[260] | 1312 | String SDMemTable::formatSec(Double x) const
|
---|
[206] | 1313 | {
|
---|
[105] | 1314 | Double xcop = x;
|
---|
| 1315 | MVTime mvt(xcop/24./3600.); // make days
|
---|
[365] | 1316 |
|
---|
[105] | 1317 | if (x < 59.95)
|
---|
[281] | 1318 | return String(" ") + mvt.string(MVTime::TIME_CLEAN_NO_HM, 7)+"s";
|
---|
| 1319 | else if (x < 3599.95)
|
---|
| 1320 | return String(" ") + mvt.string(MVTime::TIME_CLEAN_NO_H,7)+" ";
|
---|
| 1321 | else {
|
---|
| 1322 | ostringstream oss;
|
---|
| 1323 | oss << setw(2) << std::right << setprecision(1) << mvt.hour();
|
---|
| 1324 | oss << ":" << mvt.string(MVTime::TIME_CLEAN_NO_H,7) << " ";
|
---|
| 1325 | return String(oss);
|
---|
| 1326 | }
|
---|
[105] | 1327 | };
|
---|
| 1328 |
|
---|
[281] | 1329 | String SDMemTable::formatDirection(const MDirection& md) const
|
---|
| 1330 | {
|
---|
| 1331 | Vector<Double> t = md.getAngle(Unit(String("rad"))).getValue();
|
---|
| 1332 | Int prec = 7;
|
---|
| 1333 |
|
---|
| 1334 | MVAngle mvLon(t[0]);
|
---|
| 1335 | String sLon = mvLon.string(MVAngle::TIME,prec);
|
---|
| 1336 | MVAngle mvLat(t[1]);
|
---|
| 1337 | String sLat = mvLat.string(MVAngle::ANGLE+MVAngle::DIG2,prec);
|
---|
[380] | 1338 | return sLon + String(" ") + sLat;
|
---|
[281] | 1339 | }
|
---|
| 1340 |
|
---|
| 1341 |
|
---|
[206] | 1342 | std::string SDMemTable::getFluxUnit() const
|
---|
| 1343 | {
|
---|
| 1344 | String tmp;
|
---|
| 1345 | table_.keywordSet().get("FluxUnit", tmp);
|
---|
| 1346 | return tmp;
|
---|
| 1347 | }
|
---|
| 1348 |
|
---|
[218] | 1349 | void SDMemTable::setFluxUnit(const std::string& unit)
|
---|
| 1350 | {
|
---|
| 1351 | String tmp(unit);
|
---|
| 1352 | Unit tU(tmp);
|
---|
| 1353 | if (tU==Unit("K") || tU==Unit("Jy")) {
|
---|
| 1354 | table_.rwKeywordSet().define(String("FluxUnit"), tmp);
|
---|
| 1355 | } else {
|
---|
| 1356 | throw AipsError("Illegal unit - must be compatible with Jy or K");
|
---|
| 1357 | }
|
---|
| 1358 | }
|
---|
| 1359 |
|
---|
[275] | 1360 |
|
---|
[236] | 1361 | void SDMemTable::setInstrument(const std::string& name)
|
---|
| 1362 | {
|
---|
| 1363 | Bool throwIt = True;
|
---|
[476] | 1364 | Instrument ins = SDAttr::convertInstrument(name, throwIt);
|
---|
[236] | 1365 | String nameU(name);
|
---|
| 1366 | nameU.upcase();
|
---|
| 1367 | table_.rwKeywordSet().define(String("AntennaName"), nameU);
|
---|
| 1368 | }
|
---|
| 1369 |
|
---|
[380] | 1370 | std::string SDMemTable::summary(bool verbose) const {
|
---|
[281] | 1371 |
|
---|
[455] | 1372 | // Format header info
|
---|
[89] | 1373 | ostringstream oss;
|
---|
| 1374 | oss << endl;
|
---|
[380] | 1375 | oss << "--------------------------------------------------------------------------------" << endl;
|
---|
[89] | 1376 | oss << " Scan Table Summary" << endl;
|
---|
[380] | 1377 | oss << "--------------------------------------------------------------------------------" << endl;
|
---|
[89] | 1378 | oss.flags(std::ios_base::left);
|
---|
| 1379 | oss << setw(15) << "Beams:" << setw(4) << nBeam() << endl
|
---|
| 1380 | << setw(15) << "IFs:" << setw(4) << nIF() << endl
|
---|
| 1381 | << setw(15) << "Polarisations:" << setw(4) << nPol() << endl
|
---|
| 1382 | << setw(15) << "Channels:" << setw(4) << nChan() << endl;
|
---|
| 1383 | oss << endl;
|
---|
| 1384 | String tmp;
|
---|
| 1385 | table_.keywordSet().get("Observer", tmp);
|
---|
| 1386 | oss << setw(15) << "Observer:" << tmp << endl;
|
---|
[281] | 1387 | oss << setw(15) << "Obs Date:" << getTime(-1,True) << endl;
|
---|
[89] | 1388 | table_.keywordSet().get("Project", tmp);
|
---|
| 1389 | oss << setw(15) << "Project:" << tmp << endl;
|
---|
| 1390 | table_.keywordSet().get("Obstype", tmp);
|
---|
| 1391 | oss << setw(15) << "Obs. Type:" << tmp << endl;
|
---|
| 1392 | table_.keywordSet().get("AntennaName", tmp);
|
---|
| 1393 | oss << setw(15) << "Antenna Name:" << tmp << endl;
|
---|
[206] | 1394 | table_.keywordSet().get("FluxUnit", tmp);
|
---|
| 1395 | oss << setw(15) << "Flux Unit:" << tmp << endl;
|
---|
[260] | 1396 | Table t = table_.keywordSet().asTable("FREQUENCIES");
|
---|
[105] | 1397 | Vector<Double> vec;
|
---|
| 1398 | t.keywordSet().get("RESTFREQS",vec);
|
---|
| 1399 | oss << setw(15) << "Rest Freqs:";
|
---|
| 1400 | if (vec.nelements() > 0) {
|
---|
| 1401 | oss << setprecision(0) << vec << " [Hz]" << endl;
|
---|
| 1402 | } else {
|
---|
| 1403 | oss << "None set" << endl;
|
---|
| 1404 | }
|
---|
[158] | 1405 | oss << setw(15) << "Abcissa:" << getAbcissaString() << endl;
|
---|
[105] | 1406 | oss << setw(15) << "Cursor:" << "Beam[" << getBeam() << "] "
|
---|
| 1407 | << "IF[" << getIF() << "] " << "Pol[" << getPol() << "]" << endl;
|
---|
[89] | 1408 | oss << endl;
|
---|
[455] | 1409 |
|
---|
[385] | 1410 | String dirtype ="Position ("+ MDirection::showType(getDirectionReference()) + ")";
|
---|
[380] | 1411 | oss << setw(5) << "Scan"
|
---|
[281] | 1412 | << setw(15) << "Source"
|
---|
[380] | 1413 | << setw(24) << dirtype
|
---|
[281] | 1414 | << setw(10) << "Time"
|
---|
[365] | 1415 | << setw(18) << "Integration"
|
---|
[380] | 1416 | << setw(7) << "FreqIDs" << endl;
|
---|
| 1417 | oss << "--------------------------------------------------------------------------------" << endl;
|
---|
[281] | 1418 |
|
---|
[455] | 1419 | // Generate list of scan start and end integrations
|
---|
[385] | 1420 | Vector<Int> scanIDs = scanCol_.getColumn();
|
---|
| 1421 | Vector<uInt> startInt, endInt;
|
---|
| 1422 | mathutil::scanBoundaries(startInt, endInt, scanIDs);
|
---|
[455] | 1423 |
|
---|
[385] | 1424 | const uInt nScans = startInt.nelements();
|
---|
[365] | 1425 | String name;
|
---|
| 1426 | Vector<uInt> freqIDs, listFQ;
|
---|
[385] | 1427 | uInt nInt;
|
---|
[455] | 1428 |
|
---|
[385] | 1429 | for (uInt i=0; i<nScans; i++) {
|
---|
[455] | 1430 | // Get things from first integration of scan
|
---|
| 1431 | String time = getTime(startInt(i),False);
|
---|
| 1432 | String tInt = formatSec(Double(getInterval(startInt(i))));
|
---|
| 1433 | String posit = formatDirection(getDirection(startInt(i),True));
|
---|
| 1434 | srcnCol_.getScalar(startInt(i),name);
|
---|
[367] | 1435 |
|
---|
[455] | 1436 | // Find all the FreqIDs in this scan
|
---|
| 1437 | listFQ.resize(0);
|
---|
| 1438 | for (uInt j=startInt(i); j<endInt(i)+1; j++) {
|
---|
| 1439 | freqidCol_.get(j, freqIDs);
|
---|
| 1440 | for (uInt k=0; k<freqIDs.nelements(); k++) {
|
---|
| 1441 | mathutil::addEntry(listFQ, freqIDs(k));
|
---|
| 1442 | }
|
---|
| 1443 | }
|
---|
[367] | 1444 |
|
---|
[455] | 1445 | nInt = endInt(i) - startInt(i) + 1;
|
---|
| 1446 | oss << setw(3) << std::right << i << std::left << setw(2) << " "
|
---|
| 1447 | << setw(15) << name
|
---|
| 1448 | << setw(24) << posit
|
---|
| 1449 | << setw(10) << time
|
---|
| 1450 | << setw(3) << std::right << nInt << setw(3) << " x " << std::left
|
---|
| 1451 | << setw(6) << tInt
|
---|
| 1452 | << " " << listFQ << endl;
|
---|
[2] | 1453 | }
|
---|
[89] | 1454 | oss << endl;
|
---|
[455] | 1455 | oss << "Table contains " << table_.nrow() << " integration(s) in "
|
---|
| 1456 | << nScans << " scan(s)." << endl;
|
---|
[321] | 1457 |
|
---|
[455] | 1458 | // Frequency Table
|
---|
[380] | 1459 | if (verbose) {
|
---|
| 1460 | std::vector<string> info = getCoordInfo();
|
---|
| 1461 | SDFrequencyTable sdft = getSDFreqTable();
|
---|
| 1462 | oss << endl << endl;
|
---|
| 1463 | oss << "FreqID Frame RefFreq(Hz) RefPix Increment(Hz)" << endl;
|
---|
| 1464 | oss << "--------------------------------------------------------------------------------" << endl;
|
---|
| 1465 | for (uInt i=0; i<sdft.length(); i++) {
|
---|
| 1466 | oss << setw(8) << i << setw(8)
|
---|
| 1467 | << info[3] << setw(16) << setprecision(8)
|
---|
| 1468 | << sdft.referenceValue(i) << setw(10)
|
---|
| 1469 | << sdft.referencePixel(i) << setw(12)
|
---|
| 1470 | << sdft.increment(i) << endl;
|
---|
| 1471 | }
|
---|
| 1472 | oss << "--------------------------------------------------------------------------------" << endl;
|
---|
[321] | 1473 | }
|
---|
[89] | 1474 | return String(oss);
|
---|
[2] | 1475 | }
|
---|
[483] | 1476 | /*
|
---|
| 1477 | std::string SDMemTable::scanSummary(const std::vector<int>& whichScans) {
|
---|
| 1478 | ostringstream oss;
|
---|
| 1479 | Vector<Int> scanIDs = scanCol_.getColumn();
|
---|
| 1480 | Vector<uInt> startInt, endInt;
|
---|
| 1481 | mathutil::scanBoundaries(startInt, endInt, scanIDs);
|
---|
| 1482 | const uInt nScans = startInt.nelements();
|
---|
| 1483 | std::vector<int>::const_iterator it(whichScans);
|
---|
| 1484 | return String(oss);
|
---|
| 1485 | }
|
---|
| 1486 | */
|
---|
[206] | 1487 | Int SDMemTable::nBeam() const
|
---|
| 1488 | {
|
---|
[18] | 1489 | Int n;
|
---|
| 1490 | table_.keywordSet().get("nBeam",n);
|
---|
| 1491 | return n;
|
---|
| 1492 | }
|
---|
[455] | 1493 |
|
---|
[18] | 1494 | Int SDMemTable::nIF() const {
|
---|
| 1495 | Int n;
|
---|
| 1496 | table_.keywordSet().get("nIF",n);
|
---|
| 1497 | return n;
|
---|
| 1498 | }
|
---|
[455] | 1499 |
|
---|
[18] | 1500 | Int SDMemTable::nPol() const {
|
---|
| 1501 | Int n;
|
---|
| 1502 | table_.keywordSet().get("nPol",n);
|
---|
| 1503 | return n;
|
---|
| 1504 | }
|
---|
[455] | 1505 |
|
---|
[18] | 1506 | Int SDMemTable::nChan() const {
|
---|
| 1507 | Int n;
|
---|
| 1508 | table_.keywordSet().get("nChan",n);
|
---|
| 1509 | return n;
|
---|
| 1510 | }
|
---|
[455] | 1511 |
|
---|
[488] | 1512 | Table SDMemTable::getHistoryTable() const
|
---|
| 1513 | {
|
---|
| 1514 | return table_.keywordSet().asTable("HISTORY");
|
---|
| 1515 | }
|
---|
| 1516 |
|
---|
| 1517 | void SDMemTable::appendToHistoryTable(const Table& otherHist)
|
---|
| 1518 | {
|
---|
| 1519 | Table t = table_.rwKeywordSet().asTable("HISTORY");
|
---|
| 1520 | const String sep = "--------------------------------------------------------------------------------";
|
---|
| 1521 | addHistory(sep);
|
---|
| 1522 | TableCopy::copyRows(t, otherHist, t.nrow(), 0, otherHist.nrow());
|
---|
| 1523 | addHistory(sep);
|
---|
| 1524 | }
|
---|
| 1525 |
|
---|
[483] | 1526 | void SDMemTable::addHistory(const std::string& hist)
|
---|
[206] | 1527 | {
|
---|
[483] | 1528 | Table t = table_.rwKeywordSet().asTable("HISTORY");
|
---|
| 1529 | uInt nrow = t.nrow();
|
---|
| 1530 | t.addRow();
|
---|
| 1531 | ScalarColumn<String> itemCol(t, "ITEM");
|
---|
| 1532 | itemCol.put(nrow, hist);
|
---|
[206] | 1533 | }
|
---|
| 1534 |
|
---|
[483] | 1535 | std::vector<std::string> SDMemTable::getHistory() const
|
---|
[206] | 1536 | {
|
---|
| 1537 | Vector<String> history;
|
---|
[483] | 1538 | const Table& t = table_.keywordSet().asTable("HISTORY");
|
---|
| 1539 | uInt nrow = t.nrow();
|
---|
| 1540 | ROScalarColumn<String> itemCol(t, "ITEM");
|
---|
| 1541 | std::vector<std::string> stlout;
|
---|
| 1542 | String hist;
|
---|
| 1543 | for (uInt i=0; i<nrow; ++i) {
|
---|
| 1544 | itemCol.get(i, hist);
|
---|
| 1545 | stlout.push_back(hist);
|
---|
| 1546 | }
|
---|
[206] | 1547 | return stlout;
|
---|
| 1548 | }
|
---|
[488] | 1549 |
|
---|
| 1550 |
|
---|
[16] | 1551 | /*
|
---|
[483] | 1552 | void SDMemTable::maskChannels(const std::vector<Int>& whichChans ) {
|
---|
[89] | 1553 |
|
---|
[16] | 1554 | std::vector<int>::iterator it;
|
---|
[206] | 1555 | ArrayAccessor<uChar, Axis<asap::PolAxis> > j(flags_);
|
---|
[16] | 1556 | for (it = whichChans.begin(); it != whichChans.end(); it++) {
|
---|
| 1557 | j.reset(j.begin(uInt(*it)));
|
---|
[206] | 1558 | for (ArrayAccessor<uChar, Axis<asap::BeamAxis> > i(j); i != i.end(); ++i) {
|
---|
| 1559 | for (ArrayAccessor<uChar, Axis<asap::IFAxis> > ii(i); ii != ii.end(); ++ii) {
|
---|
| 1560 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > iii(ii);
|
---|
[89] | 1561 | iii != iii.end(); ++iii) {
|
---|
| 1562 | (*iii) =
|
---|
| 1563 | }
|
---|
[16] | 1564 | }
|
---|
| 1565 | }
|
---|
| 1566 | }
|
---|
[89] | 1567 |
|
---|
[16] | 1568 | }
|
---|
| 1569 | */
|
---|
[206] | 1570 | void SDMemTable::flag(int whichRow)
|
---|
[483] | 1571 | {
|
---|
[89] | 1572 | Array<uChar> arr;
|
---|
[322] | 1573 | flagsCol_.get(whichRow, arr);
|
---|
[89] | 1574 |
|
---|
[206] | 1575 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > aa0(arr);
|
---|
[89] | 1576 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam
|
---|
[206] | 1577 | ArrayAccessor<uChar, Axis<asap::IFAxis> > aa1(aa0);
|
---|
[89] | 1578 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF
|
---|
[206] | 1579 | ArrayAccessor<uChar, Axis<asap::PolAxis> > aa2(aa1);
|
---|
[89] | 1580 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol
|
---|
| 1581 |
|
---|
[206] | 1582 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) {
|
---|
[89] | 1583 | (*i) = uChar(True);
|
---|
| 1584 | }
|
---|
| 1585 |
|
---|
[322] | 1586 | flagsCol_.put(whichRow, arr);
|
---|
[89] | 1587 | }
|
---|
[212] | 1588 |
|
---|
[281] | 1589 | MDirection::Types SDMemTable::getDirectionReference() const
|
---|
[212] | 1590 | {
|
---|
| 1591 | Float eq;
|
---|
| 1592 | table_.keywordSet().get("Equinox",eq);
|
---|
| 1593 | std::map<float,string> mp;
|
---|
| 1594 | mp[2000.0] = "J2000";
|
---|
| 1595 | mp[1950.0] = "B1950";
|
---|
| 1596 | MDirection::Types mdr;
|
---|
| 1597 | if (!MDirection::getType(mdr, mp[eq])) {
|
---|
| 1598 | mdr = MDirection::J2000;
|
---|
| 1599 | cerr << "Unknown equinox using J2000" << endl;
|
---|
| 1600 | }
|
---|
[455] | 1601 |
|
---|
[212] | 1602 | return mdr;
|
---|
| 1603 | }
|
---|
| 1604 |
|
---|
[380] | 1605 | MEpoch::Types SDMemTable::getTimeReference() const
|
---|
[212] | 1606 | {
|
---|
| 1607 | MEpoch::Types met;
|
---|
| 1608 | String ep;
|
---|
| 1609 | table_.keywordSet().get("Epoch",ep);
|
---|
| 1610 | if (!MEpoch::getType(met, ep)) {
|
---|
[387] | 1611 | cerr << "Epoch type unknown - using UTC" << endl;
|
---|
[212] | 1612 | met = MEpoch::UTC;
|
---|
| 1613 | }
|
---|
[455] | 1614 |
|
---|
[212] | 1615 | return met;
|
---|
| 1616 | }
|
---|
| 1617 |
|
---|
[236] | 1618 |
|
---|
[455] | 1619 | Bool SDMemTable::setRestFreqs(const Vector<Double>& restFreqsIn,
|
---|
| 1620 | const String& sUnit,
|
---|
| 1621 | const vector<string>& lines,
|
---|
| 1622 | const String& source,
|
---|
| 1623 | Int whichIF)
|
---|
[386] | 1624 | {
|
---|
| 1625 | const Int nIFs = nIF();
|
---|
| 1626 | if (whichIF>=nIFs) {
|
---|
| 1627 | throw(AipsError("Illegal IF index"));
|
---|
| 1628 | }
|
---|
| 1629 |
|
---|
[455] | 1630 | // Find vector of restfrequencies
|
---|
| 1631 | // Double takes precedence over String
|
---|
[401] | 1632 | Unit unit;
|
---|
| 1633 | Vector<Double> restFreqs;
|
---|
| 1634 | if (restFreqsIn.nelements()>0) {
|
---|
| 1635 | restFreqs.resize(restFreqsIn.nelements());
|
---|
| 1636 | restFreqs = restFreqsIn;
|
---|
| 1637 | unit = Unit(sUnit);
|
---|
| 1638 | } else if (lines.size()>0) {
|
---|
| 1639 | const uInt nLines = lines.size();
|
---|
| 1640 | unit = Unit("Hz");
|
---|
| 1641 | restFreqs.resize(nLines);
|
---|
| 1642 | MFrequency lineFreq;
|
---|
| 1643 | for (uInt i=0; i<nLines; i++) {
|
---|
| 1644 | String tS(lines[i]);
|
---|
| 1645 | tS.upcase();
|
---|
| 1646 | if (MeasTable::Line(lineFreq, tS)) {
|
---|
| 1647 | restFreqs[i] = lineFreq.getValue().getValue(); // Hz
|
---|
| 1648 | } else {
|
---|
[455] | 1649 | String s = String(lines[i]) +
|
---|
| 1650 | String(" is an unrecognized spectral line");
|
---|
[401] | 1651 | throw(AipsError(s));
|
---|
| 1652 | }
|
---|
| 1653 | }
|
---|
| 1654 | } else {
|
---|
| 1655 | throw(AipsError("You have not specified any rest frequencies or lines"));
|
---|
| 1656 | }
|
---|
| 1657 |
|
---|
[455] | 1658 | // If multiple restfreqs, must be length nIF. In this
|
---|
| 1659 | // case we will just replace the rest frequencies
|
---|
[392] | 1660 | const uInt nRestFreqs = restFreqs.nelements();
|
---|
| 1661 | Int idx = -1;
|
---|
[386] | 1662 | SDFrequencyTable sdft = getSDFreqTable();
|
---|
| 1663 |
|
---|
[392] | 1664 | if (nRestFreqs>1) {
|
---|
[455] | 1665 | // Replace restFreqs, one per IF
|
---|
[392] | 1666 | if (nRestFreqs != nIFs) {
|
---|
| 1667 | throw (AipsError("Number of rest frequencies must be equal to the number of IFs"));
|
---|
| 1668 | }
|
---|
[414] | 1669 | cout << "Replacing rest frequencies with given list, one per IF" << endl;
|
---|
[392] | 1670 | sdft.deleteRestFrequencies();
|
---|
| 1671 | for (uInt i=0; i<nRestFreqs; i++) {
|
---|
| 1672 | Quantum<Double> rf(restFreqs[i], unit);
|
---|
| 1673 | sdft.addRestFrequency(rf.getValue("Hz"));
|
---|
| 1674 | }
|
---|
| 1675 | } else {
|
---|
| 1676 |
|
---|
[455] | 1677 | // Add new rest freq
|
---|
[392] | 1678 | Quantum<Double> rf(restFreqs[0], unit);
|
---|
| 1679 | idx = sdft.addRestFrequency(rf.getValue("Hz"));
|
---|
[414] | 1680 | cout << "Selecting given rest frequency" << endl;
|
---|
[392] | 1681 | }
|
---|
[455] | 1682 |
|
---|
| 1683 | // Replace
|
---|
[386] | 1684 | Bool empty = source.empty();
|
---|
| 1685 | Bool ok = False;
|
---|
| 1686 | if (putSDFreqTable(sdft)) {
|
---|
| 1687 | const uInt nRow = table_.nrow();
|
---|
| 1688 | String srcName;
|
---|
| 1689 | Vector<uInt> restFreqIDs;
|
---|
| 1690 | for (uInt i=0; i<nRow; i++) {
|
---|
| 1691 | srcnCol_.get(i, srcName);
|
---|
| 1692 | restfreqidCol_.get(i,restFreqIDs);
|
---|
[455] | 1693 |
|
---|
[392] | 1694 | if (idx==-1) {
|
---|
[455] | 1695 | // Replace vector of restFreqs; one per IF.
|
---|
| 1696 | // No selection possible
|
---|
[392] | 1697 | for (uInt i=0; i<nIFs; i++) restFreqIDs[i] = i;
|
---|
| 1698 | } else {
|
---|
[455] | 1699 | // Set RestFreqID for selected data
|
---|
[392] | 1700 | if (empty || source==srcName) {
|
---|
| 1701 | if (whichIF<0) {
|
---|
| 1702 | restFreqIDs = idx;
|
---|
| 1703 | } else {
|
---|
| 1704 | restFreqIDs[whichIF] = idx;
|
---|
| 1705 | }
|
---|
[386] | 1706 | }
|
---|
| 1707 | }
|
---|
| 1708 | restfreqidCol_.put(i,restFreqIDs);
|
---|
| 1709 | }
|
---|
| 1710 | ok = True;
|
---|
| 1711 | } else {
|
---|
[455] | 1712 | ok = False;
|
---|
[386] | 1713 | }
|
---|
[455] | 1714 |
|
---|
[386] | 1715 | return ok;
|
---|
| 1716 | }
|
---|
| 1717 |
|
---|
[414] | 1718 | void SDMemTable::spectralLines() const
|
---|
[401] | 1719 | {
|
---|
| 1720 | Vector<String> lines = MeasTable::Lines();
|
---|
| 1721 | MFrequency lineFreq;
|
---|
| 1722 | Double freq;
|
---|
[455] | 1723 |
|
---|
[414] | 1724 | cout.flags(std::ios_base::left);
|
---|
| 1725 | cout << "Line Frequency (Hz)" << endl;
|
---|
| 1726 | cout << "-----------------------" << endl;
|
---|
[401] | 1727 | for (uInt i=0; i<lines.nelements(); i++) {
|
---|
| 1728 | MeasTable::Line(lineFreq, lines[i]);
|
---|
| 1729 | freq = lineFreq.getValue().getValue(); // Hz
|
---|
[414] | 1730 | cout << setw(11) << lines[i] << setprecision(10) << freq << endl;
|
---|
[401] | 1731 | }
|
---|
| 1732 | }
|
---|
[386] | 1733 |
|
---|
[380] | 1734 | void SDMemTable::renumber()
|
---|
| 1735 | {
|
---|
| 1736 | uInt nRow = scanCol_.nrow();
|
---|
| 1737 | Int newscanid = 0;
|
---|
| 1738 | Int cIdx;// the current scanid
|
---|
| 1739 | // get the first scanid
|
---|
| 1740 | scanCol_.getScalar(0,cIdx);
|
---|
| 1741 | Int pIdx = cIdx;// the scanid of the previous row
|
---|
| 1742 | for (uInt i=0; i<nRow;++i) {
|
---|
| 1743 | scanCol_.getScalar(i,cIdx);
|
---|
| 1744 | if (pIdx == cIdx) {
|
---|
| 1745 | // renumber
|
---|
| 1746 | scanCol_.put(i,newscanid);
|
---|
| 1747 | } else {
|
---|
| 1748 | ++newscanid;
|
---|
| 1749 | pIdx = cIdx; // store scanid
|
---|
| 1750 | --i; // don't increment next loop
|
---|
| 1751 | }
|
---|
| 1752 | }
|
---|
| 1753 | }
|
---|
[386] | 1754 |
|
---|
[418] | 1755 |
|
---|
[483] | 1756 | void SDMemTable::getCursorSlice(IPosition& start, IPosition& end,
|
---|
[455] | 1757 | const IPosition& shape) const
|
---|
[430] | 1758 | {
|
---|
[455] | 1759 | const uInt nDim = shape.nelements();
|
---|
| 1760 | start.resize(nDim);
|
---|
| 1761 | end.resize(nDim);
|
---|
| 1762 |
|
---|
| 1763 | start(asap::BeamAxis) = beamSel_;
|
---|
| 1764 | end(asap::BeamAxis) = beamSel_;
|
---|
| 1765 | start(asap::IFAxis) = IFSel_;
|
---|
| 1766 | end(asap::IFAxis) = IFSel_;
|
---|
[430] | 1767 |
|
---|
[455] | 1768 | start(asap::PolAxis) = polSel_;
|
---|
| 1769 | end(asap::PolAxis) = polSel_;
|
---|
[430] | 1770 |
|
---|
[455] | 1771 | start(asap::ChanAxis) = 0;
|
---|
| 1772 | end(asap::ChanAxis) = shape(asap::ChanAxis) - 1;
|
---|
[430] | 1773 | }
|
---|
| 1774 |
|
---|
[447] | 1775 |
|
---|
[455] | 1776 | std::vector<float> SDMemTable::getFloatSpectrum(const Array<Float>& arr) const
|
---|
| 1777 | // Get spectrum at cursor location
|
---|
[447] | 1778 | {
|
---|
| 1779 |
|
---|
[455] | 1780 | // Setup accessors
|
---|
[447] | 1781 | ArrayAccessor<Float, Axis<asap::BeamAxis> > aa0(arr);
|
---|
| 1782 | aa0.reset(aa0.begin(uInt(beamSel_))); // Beam selection
|
---|
| 1783 |
|
---|
| 1784 | ArrayAccessor<Float, Axis<asap::IFAxis> > aa1(aa0);
|
---|
| 1785 | aa1.reset(aa1.begin(uInt(IFSel_))); // IF selection
|
---|
| 1786 |
|
---|
| 1787 | ArrayAccessor<Float, Axis<asap::PolAxis> > aa2(aa1);
|
---|
| 1788 | aa2.reset(aa2.begin(uInt(polSel_))); // Pol selection
|
---|
[455] | 1789 |
|
---|
[447] | 1790 | std::vector<float> spectrum;
|
---|
| 1791 | for (ArrayAccessor<Float, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) {
|
---|
| 1792 | spectrum.push_back(*i);
|
---|
| 1793 | }
|
---|
| 1794 | return spectrum;
|
---|
| 1795 | }
|
---|
| 1796 |
|
---|