[2] | 1 | //#--------------------------------------------------------------------------- |
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| 2 | //# SDContainer.cc: A container class for single dish integrations |
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| 3 | //#--------------------------------------------------------------------------- |
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| 4 | //# Copyright (C) 2004 |
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[125] | 5 | //# ATNF |
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[2] | 6 | //# |
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| 7 | //# This program is free software; you can redistribute it and/or modify it |
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| 8 | //# under the terms of the GNU General Public License as published by the Free |
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| 9 | //# Software Foundation; either version 2 of the License, or (at your option) |
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| 10 | //# any later version. |
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| 11 | //# |
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| 12 | //# This program is distributed in the hope that it will be useful, but |
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| 13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General |
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| 15 | //# Public License for more details. |
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| 16 | //# |
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| 17 | //# You should have received a copy of the GNU General Public License along |
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| 18 | //# with this program; if not, write to the Free Software Foundation, Inc., |
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| 19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA. |
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| 20 | //# |
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| 21 | //# Correspondence concerning this software should be addressed as follows: |
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| 22 | //# Internet email: Malte.Marquarding@csiro.au |
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| 23 | //# Postal address: Malte Marquarding, |
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| 24 | //# Australia Telescope National Facility, |
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| 25 | //# P.O. Box 76, |
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| 26 | //# Epping, NSW, 2121, |
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| 27 | //# AUSTRALIA |
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| 28 | //# |
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| 29 | //# $Id: |
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| 30 | //#--------------------------------------------------------------------------- |
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[349] | 31 | |
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[125] | 32 | #include <casa/aips.h> |
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[327] | 33 | #include <casa/iostream.h> |
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| 34 | #include <casa/iomanip.h> |
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[104] | 35 | #include <casa/Exceptions.h> |
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[349] | 36 | #include <casa/Utilities/Assert.h> |
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[81] | 37 | #include <tables/Tables/Table.h> |
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| 38 | #include <casa/Arrays/IPosition.h> |
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[125] | 39 | #include <casa/Arrays/Matrix.h> |
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[349] | 40 | #include <casa/Arrays/VectorIter.h> |
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[81] | 41 | #include <casa/Arrays/ArrayAccessor.h> |
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[308] | 42 | #include <casa/BasicMath/Math.h> |
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[81] | 43 | #include <casa/Quanta/MVTime.h> |
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[2] | 44 | |
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[308] | 45 | |
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[349] | 46 | |
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[215] | 47 | #include "SDDefs.h" |
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[2] | 48 | #include "SDContainer.h" |
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| 49 | |
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[125] | 50 | using namespace casa; |
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[83] | 51 | using namespace asap; |
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[2] | 52 | |
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[18] | 53 | void SDHeader::print() const { |
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| 54 | MVTime mvt(this->utc); |
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[47] | 55 | mvt.setFormat(MVTime::YMD); |
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[18] | 56 | cout << "Observer: " << this->observer << endl |
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| 57 | << "Project: " << this->project << endl |
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| 58 | << "Obstype: " << this->obstype << endl |
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| 59 | << "Antenna: " << this->antennaname << endl |
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| 60 | << "Ant. Position: " << this->antennaposition << endl |
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| 61 | << "Equinox: " << this->equinox << endl |
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| 62 | << "Freq. ref.: " << this->freqref << endl |
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| 63 | << "Ref. frequency: " << this->reffreq << endl |
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| 64 | << "Bandwidth: " << this->bandwidth << endl |
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| 65 | << "Time (utc): " |
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[47] | 66 | << mvt |
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[18] | 67 | << endl; |
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| 68 | //setprecision(10) << this->utc << endl; |
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| 69 | } |
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| 70 | |
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| 71 | |
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[16] | 72 | SDContainer::SDContainer(uInt nBeam, uInt nIF, uInt nPol, uInt nChan) |
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[2] | 73 | : nBeam_(nBeam), |
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[16] | 74 | nIF_(nIF), |
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| 75 | nPol_(nPol), |
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| 76 | nChan_(nChan), |
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| 77 | spectrum_(IPosition(4,nBeam,nIF,nPol,nChan)), |
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| 78 | flags_(IPosition(4,nBeam,nIF,nPol,nChan)), |
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[34] | 79 | tsys_(IPosition(4,nBeam,nIF,nPol,nChan)), |
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[79] | 80 | freqidx_(nIF), |
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[388] | 81 | restfreqidx_(nIF), |
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[79] | 82 | direction_(IPosition(2,nBeam,2)) { |
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[2] | 83 | uChar x = 0; |
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| 84 | flags_ = ~x; |
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[104] | 85 | tcal.resize(2); |
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[2] | 86 | } |
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| 87 | |
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[16] | 88 | SDContainer::SDContainer(IPosition shp) |
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| 89 | : nBeam_(shp(0)), |
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| 90 | nIF_(shp(1)), |
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| 91 | nPol_(shp(2)), |
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| 92 | nChan_(shp(3)), |
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| 93 | spectrum_(shp), |
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| 94 | flags_(shp), |
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[34] | 95 | tsys_(shp), |
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[388] | 96 | freqidx_(shp(1)), |
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| 97 | restfreqidx_(shp(1)) { |
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[79] | 98 | IPosition ip(2,shp(0),2); |
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| 99 | direction_.resize(ip); |
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[16] | 100 | uChar x = 0; |
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| 101 | flags_ = ~x; |
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[104] | 102 | tcal.resize(2); |
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[16] | 103 | } |
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| 104 | |
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[2] | 105 | SDContainer::~SDContainer() { |
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| 106 | } |
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| 107 | |
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[47] | 108 | Bool SDContainer::resize(IPosition shp) { |
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| 109 | nBeam_ = shp(0); |
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| 110 | nIF_ = shp(1); |
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| 111 | nPol_ = shp(2); |
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| 112 | nChan_ = shp(3); |
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| 113 | spectrum_.resize(shp); |
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| 114 | flags_.resize(shp); |
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| 115 | tsys_.resize(shp); |
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| 116 | freqidx_.resize(shp(1)); |
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[388] | 117 | restfreqidx_.resize(shp(1)); |
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[79] | 118 | IPosition ip(2,shp(0),2); |
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| 119 | direction_.resize(ip); |
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[47] | 120 | } |
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| 121 | |
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[2] | 122 | Bool SDContainer::putSpectrum(const Array<Float>& spec) { |
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| 123 | spectrum_ = spec; |
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| 124 | } |
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[7] | 125 | Bool SDContainer::putFlags(const Array<uChar>& flag) { |
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| 126 | flags_ = flag; |
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[2] | 127 | } |
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[7] | 128 | Bool SDContainer::putTsys(const Array<Float>& tsys) { |
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| 129 | tsys_ = tsys; |
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[2] | 130 | } |
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| 131 | |
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| 132 | Bool SDContainer::setSpectrum(const Matrix<Float>& spec, |
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[349] | 133 | uInt whichBeam, uInt whichIF) |
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| 134 | // |
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| 135 | // spec is [nChan,nPol] |
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| 136 | // spectrum_ is [,,,nChan] |
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| 137 | // How annoying. |
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| 138 | // |
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| 139 | { |
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[2] | 140 | |
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[349] | 141 | // Get slice and check dim |
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| 142 | |
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| 143 | IPosition start, end; |
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| 144 | setSlice (start, end, spec.shape(), spectrum_.shape(), |
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| 145 | whichBeam, whichIF, False); |
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| 146 | |
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| 147 | // Get a reference to the Pol/Chan slice we are interested in |
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| 148 | |
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| 149 | Array<Float> subArr = spectrum_(start,end); |
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| 150 | |
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| 151 | // Iterate through it and fill |
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| 152 | |
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| 153 | ReadOnlyVectorIterator<Float> inIt(spec,0); |
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| 154 | VectorIterator<Float> outIt(subArr,asap::ChanAxis); |
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| 155 | while (!inIt.pastEnd()) { |
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| 156 | outIt.vector() = inIt.vector(); |
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| 157 | // |
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| 158 | inIt.next(); |
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| 159 | outIt.next(); |
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[14] | 160 | } |
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[349] | 161 | |
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[2] | 162 | // unset flags for this spectrum, they might be set again by the |
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| 163 | // setFlags method |
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[14] | 164 | |
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[2] | 165 | Array<uChar> arr(flags_(start,end)); |
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| 166 | arr = uChar(0); |
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[336] | 167 | // |
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| 168 | return True; |
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[2] | 169 | } |
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| 170 | |
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| 171 | |
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[349] | 172 | Bool SDContainer::setFlags (const Matrix<uChar>& flags, |
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| 173 | uInt whichBeam, uInt whichIF) |
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| 174 | // |
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| 175 | // flags is [nChan,nPol] |
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| 176 | // flags_ is [,,,nChan] |
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| 177 | // How annoying. |
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| 178 | // |
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| 179 | { |
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| 180 | // Get slice and check dim |
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[14] | 181 | |
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[349] | 182 | IPosition start, end; |
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| 183 | setSlice (start, end, flags.shape(), flags_.shape(), |
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| 184 | whichBeam, whichIF, False); |
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| 185 | |
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| 186 | // Get a reference to the Pol/Chan slice we are interested in |
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| 187 | |
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| 188 | Array<uChar> subArr = flags_(start,end); |
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| 189 | |
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| 190 | // Iterate through it and fill |
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| 191 | |
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| 192 | ReadOnlyVectorIterator<uChar> inIt(flags,0); |
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| 193 | VectorIterator<uChar> outIt(subArr,asap::ChanAxis); |
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| 194 | while (!inIt.pastEnd()) { |
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| 195 | outIt.vector() = inIt.vector(); |
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| 196 | // |
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| 197 | inIt.next(); |
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| 198 | outIt.next(); |
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[2] | 199 | } |
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[349] | 200 | // |
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[16] | 201 | return True; |
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[2] | 202 | } |
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| 203 | |
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[349] | 204 | |
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[2] | 205 | Bool SDContainer::setTsys(const Vector<Float>& tsys, |
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[349] | 206 | uInt whichBeam, uInt whichIF) |
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| 207 | // |
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| 208 | // Tsys does not depend upon channel but is replicated |
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| 209 | // for simplicity of use |
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| 210 | // |
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| 211 | { |
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| 212 | |
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| 213 | // Get slice and check dim |
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| 214 | |
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| 215 | IPosition start, end; |
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| 216 | setSlice (start, end, tsys.shape(), tsys_.shape(), |
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| 217 | whichBeam, whichIF, True); |
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| 218 | |
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| 219 | // Get a reference to the Pol/Chan slice we are interested in |
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| 220 | |
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| 221 | Array<Float> subArr = tsys_(start,end); |
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| 222 | |
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| 223 | // Iterate through it and fill |
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| 224 | |
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| 225 | VectorIterator<Float> outIt(subArr,asap::ChanAxis); |
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| 226 | uInt i=0; |
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| 227 | while (!outIt.pastEnd()) { |
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| 228 | outIt.vector() = tsys(i++); |
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| 229 | outIt.next(); |
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[7] | 230 | } |
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[2] | 231 | } |
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[27] | 232 | |
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[125] | 233 | Array<Float> SDContainer::getSpectrum(uInt whichBeam, uInt whichIF) const |
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| 234 | { |
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[27] | 235 | Matrix<Float> spectra(nChan_, nPol_); |
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| 236 | |
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| 237 | // Beam. |
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[204] | 238 | ArrayAccessor<Float, Axis<asap::BeamAxis> > i0(spectrum_); |
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[27] | 239 | i0.reset(i0.begin(whichBeam)); |
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| 240 | |
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| 241 | // IF. |
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[204] | 242 | ArrayAccessor<Float, Axis<asap::IFAxis> > i1(i0); |
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[27] | 243 | i1.reset(i1.begin(whichIF)); |
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| 244 | |
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| 245 | // Polarization. |
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[204] | 246 | ArrayAccessor<Float, Axis<asap::PolAxis> > i2(i1); |
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| 247 | ArrayAccessor<Float, Axis<asap::IFAxis> > o1(spectra); |
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[27] | 248 | |
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| 249 | while (i2 != i2.end()) { |
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| 250 | // Channel. |
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[204] | 251 | ArrayAccessor<Float, Axis<asap::ChanAxis> > i3(i2); |
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| 252 | ArrayAccessor<Float, Axis<asap::BeamAxis> > o0(o1); |
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[27] | 253 | |
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| 254 | while (i3 != i3.end()) { |
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| 255 | *o0 = *i3; |
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| 256 | |
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| 257 | i3++; |
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| 258 | o0++; |
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| 259 | } |
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| 260 | |
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| 261 | i2++; |
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| 262 | o1++; |
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| 263 | } |
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| 264 | |
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[67] | 265 | return spectra.copy(); |
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[27] | 266 | } |
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| 267 | |
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[125] | 268 | |
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[67] | 269 | Array<uChar> SDContainer::getFlags(uInt whichBeam, uInt whichIF) const |
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[27] | 270 | { |
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| 271 | Matrix<uChar> flagtra(nChan_, nPol_); |
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| 272 | |
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| 273 | // Beam. |
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[204] | 274 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > i0(flags_); |
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[27] | 275 | i0.reset(i0.begin(whichBeam)); |
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| 276 | |
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| 277 | // IF. |
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[204] | 278 | ArrayAccessor<uChar, Axis<asap::IFAxis> > i1(i0); |
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[27] | 279 | i1.reset(i1.begin(whichIF)); |
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| 280 | |
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| 281 | // Polarization. |
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[204] | 282 | ArrayAccessor<uChar, Axis<asap::PolAxis> > i2(i1); |
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| 283 | ArrayAccessor<uChar, Axis<asap::IFAxis> > o1(flagtra); |
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[27] | 284 | |
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| 285 | while (i2 != i2.end()) { |
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| 286 | // Channel. |
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[204] | 287 | ArrayAccessor<uChar, Axis<asap::ChanAxis> > i3(i2); |
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| 288 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > o0(o1); |
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[27] | 289 | |
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| 290 | while (i3 != i3.end()) { |
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| 291 | *o0 = *i3; |
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| 292 | |
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| 293 | i3++; |
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| 294 | o0++; |
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| 295 | } |
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| 296 | |
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| 297 | i2++; |
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| 298 | o1++; |
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| 299 | } |
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| 300 | |
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[67] | 301 | return flagtra.copy(); |
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[27] | 302 | } |
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| 303 | |
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[67] | 304 | Array<Float> SDContainer::getTsys(uInt whichBeam, uInt whichIF) const |
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[27] | 305 | { |
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| 306 | Vector<Float> tsys(nPol_); |
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| 307 | |
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| 308 | // Beam. |
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[204] | 309 | ArrayAccessor<Float, Axis<asap::BeamAxis> > i0(tsys_); |
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[27] | 310 | i0.reset(i0.begin(whichBeam)); |
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| 311 | |
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| 312 | // IF. |
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[204] | 313 | ArrayAccessor<Float, Axis<asap::IFAxis> > i1(i0); |
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[27] | 314 | i1.reset(i1.begin(whichIF)); |
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| 315 | |
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| 316 | // Channel. |
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[204] | 317 | ArrayAccessor<Float, Axis<asap::ChanAxis> > i3(i1); |
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[27] | 318 | |
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| 319 | // Polarization. |
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[204] | 320 | ArrayAccessor<Float, Axis<asap::PolAxis> > i2(i3); |
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| 321 | ArrayAccessor<Float, Axis<asap::BeamAxis> > o0(tsys); |
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[27] | 322 | |
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| 323 | while (i2 != i2.end()) { |
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| 324 | *o0 = *i2; |
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| 325 | |
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| 326 | i2++; |
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| 327 | o0++; |
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| 328 | } |
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[67] | 329 | return tsys.copy(); |
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[27] | 330 | } |
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[34] | 331 | |
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[79] | 332 | Array<Double> SDContainer::getDirection(uInt whichBeam) const { |
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| 333 | Vector<Double> direct(2); |
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[204] | 334 | ArrayAccessor<Double, Axis<asap::BeamAxis> > i0(direction_); |
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[79] | 335 | i0.reset(i0.begin(whichBeam)); |
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[204] | 336 | ArrayAccessor<Double, Axis<asap::BeamAxis> > o0(direct); |
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| 337 | ArrayAccessor<Double, Axis<asap::IFAxis> > i1(i0); |
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[79] | 338 | while (i1 != i1.end()) { |
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| 339 | *o0 = *i1; |
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| 340 | i1++; |
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| 341 | o0++; |
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| 342 | } |
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| 343 | return direct.copy(); |
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| 344 | } |
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| 345 | |
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| 346 | |
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[388] | 347 | Bool SDContainer::setFrequencyMap(uInt freqID, uInt whichIF) { |
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| 348 | freqidx_[whichIF] = freqID; |
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[34] | 349 | return True; |
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| 350 | } |
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| 351 | |
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| 352 | Bool SDContainer::putFreqMap(const Vector<uInt>& freqs) { |
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| 353 | freqidx_.resize(); |
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| 354 | freqidx_ = freqs; |
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| 355 | return True; |
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| 356 | } |
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| 357 | |
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[388] | 358 | Bool SDContainer::setRestFrequencyMap(uInt freqID, uInt whichIF) { |
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| 359 | restfreqidx_[whichIF] = freqID; |
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| 360 | return True; |
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| 361 | } |
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| 362 | |
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| 363 | Bool SDContainer::putRestFreqMap(const Vector<uInt>& freqs) { |
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| 364 | restfreqidx_.resize(); |
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| 365 | restfreqidx_ = freqs; |
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| 366 | return True; |
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| 367 | } |
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| 368 | |
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[79] | 369 | Bool SDContainer::setDirection(const Vector<Double>& point, uInt whichBeam) { |
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| 370 | if (point.nelements() != 2) return False; |
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[204] | 371 | ArrayAccessor<Double, Axis<asap::BeamAxis> > aa0(direction_); |
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[79] | 372 | aa0.reset(aa0.begin(whichBeam)); |
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[204] | 373 | ArrayAccessor<Double, Axis<asap::BeamAxis> > jj(point); |
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| 374 | for (ArrayAccessor<Double, Axis<asap::IFAxis> > i(aa0);i != i.end(); ++i) { |
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[79] | 375 | |
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| 376 | (*i) = (*jj); |
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| 377 | jj++; |
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| 378 | } |
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| 379 | return True; |
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| 380 | } |
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| 381 | |
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| 382 | Bool SDContainer::putDirection(const Array<Double>& dir) { |
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| 383 | direction_.resize(); |
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| 384 | direction_ = dir; |
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| 385 | return True; |
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| 386 | } |
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| 387 | |
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[204] | 388 | Bool SDContainer::appendHistory(const String& hist) |
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| 389 | { |
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| 390 | history_.resize(history_.nelements()+1,True); |
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| 391 | history_[history_.nelements()-1] = hist; |
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| 392 | return True; |
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| 393 | } |
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| 394 | Bool SDContainer::putHistory(const Vector<String>& hist) |
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| 395 | { |
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| 396 | history_.resize(); |
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| 397 | history_ = hist; |
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| 398 | return True; |
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| 399 | } |
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| 400 | |
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[349] | 401 | void SDContainer::setSlice (IPosition& start, IPosition& end, |
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| 402 | const IPosition& shpIn, const IPosition& shpOut, |
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| 403 | uInt whichBeam, uInt whichIF, Bool tSys) const |
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| 404 | // |
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| 405 | // tSYs |
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| 406 | // shpIn [nPol] |
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| 407 | // else |
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| 408 | // shpIn [nCHan,nPol] |
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| 409 | // |
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| 410 | { |
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| 411 | AlwaysAssert(asap::nAxes==4,AipsError); |
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| 412 | if (tSys) { |
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| 413 | AlwaysAssert(shpOut(asap::PolAxis)==shpIn(0),AipsError); // pol |
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| 414 | } else { |
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| 415 | AlwaysAssert(shpOut(asap::ChanAxis)==shpIn(0),AipsError); // chan |
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| 416 | AlwaysAssert(shpOut(asap::PolAxis)==shpIn(1),AipsError); // pol |
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| 417 | } |
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| 418 | // |
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| 419 | start.resize(asap::nAxes); |
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| 420 | start = 0; |
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| 421 | start(asap::BeamAxis) = whichBeam; |
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| 422 | start(asap::IFAxis) = whichIF; |
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| 423 | // |
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| 424 | end.resize(asap::nAxes); |
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| 425 | end = shpOut-1; |
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| 426 | end(asap::BeamAxis) = whichBeam; |
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| 427 | end(asap::IFAxis) = whichIF; |
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| 428 | } |
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| 429 | |
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| 430 | |
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[388] | 431 | uInt SDFrequencyTable::addFrequency(Double refPix, Double refVal, Double inc) |
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| 432 | { |
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[34] | 433 | if (length() > 0) { |
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[388] | 434 | for (uInt i=0; i< length();i++) { |
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| 435 | if (near(refVal,refVal_[i]) && |
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| 436 | near(refPix,refPix_[i]) && |
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| 437 | near(inc,increment_[i])) { |
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| 438 | return i; |
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[34] | 439 | } |
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| 440 | } |
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| 441 | } |
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[388] | 442 | |
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| 443 | // Not found - add it |
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| 444 | |
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[34] | 445 | nFreq_ += 1; |
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| 446 | refPix_.resize(nFreq_,True); |
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| 447 | refVal_.resize(nFreq_,True); |
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| 448 | increment_.resize(nFreq_,True); |
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| 449 | refPix_[nFreq_-1] = refPix; |
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| 450 | refVal_[nFreq_-1] = refVal; |
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| 451 | increment_[nFreq_-1] = inc; |
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[388] | 452 | return nFreq_-1; |
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[34] | 453 | } |
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| 454 | |
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[388] | 455 | uInt SDFrequencyTable::addRestFrequency(Double val) |
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[204] | 456 | { |
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[388] | 457 | uInt nFreq = restFreqs_.nelements(); |
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| 458 | if (nFreq>0) { |
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| 459 | for (uInt i=0; i<nFreq;i++) { |
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| 460 | if (near(restFreqs_[i],val)) { |
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| 461 | return i; |
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[204] | 462 | } |
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| 463 | } |
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| 464 | } |
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[388] | 465 | |
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| 466 | // Not found - add it |
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| 467 | |
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| 468 | nFreq += 1; |
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| 469 | restFreqs_.resize(nFreq,True); |
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| 470 | restFreqs_[nFreq-1] = val; |
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| 471 | return nFreq-1; |
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[204] | 472 | } |
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[388] | 473 | |
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| 474 | |
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[204] | 475 | void SDFrequencyTable::restFrequencies(Vector<Double>& rfs, |
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| 476 | String& rfunit ) const |
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| 477 | { |
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| 478 | rfs.resize(restFreqs_.nelements()); |
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| 479 | rfs = restFreqs_; |
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| 480 | rfunit = restFreqUnit_; |
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| 481 | } |
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[326] | 482 | |
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| 483 | |
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[349] | 484 | |
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| 485 | // SDDataDesc |
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| 486 | |
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[326] | 487 | uInt SDDataDesc::addEntry (const String& source, uInt freqID, const MDirection& dir) |
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| 488 | { |
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| 489 | |
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| 490 | // See if already exists |
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| 491 | |
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| 492 | if (n_ > 0) { |
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| 493 | for (uInt i=0; i<n_; i++) { |
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| 494 | if (source==source_[i] && freqID==freqID_[i]) { |
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| 495 | return i; |
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| 496 | } |
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| 497 | } |
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| 498 | } |
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| 499 | |
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| 500 | // Not found - add it |
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| 501 | |
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| 502 | n_ += 1; |
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| 503 | source_.resize(n_,True); |
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| 504 | freqID_.resize(n_,True); |
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| 505 | dir_.resize(n_,True,True); |
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| 506 | // |
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| 507 | source_[n_-1] = source; |
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| 508 | freqID_[n_-1] = freqID; |
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| 509 | dir_[n_-1] = dir; |
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| 510 | // |
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| 511 | return n_-1; |
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| 512 | } |
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| 513 | |
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| 514 | |
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| 515 | void SDDataDesc::summary() const |
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| 516 | { |
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| 517 | cerr << "Source FreqID" << endl; |
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| 518 | for (uInt i=0; i<n_; i++) { |
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[327] | 519 | cerr << setw(11) << source_(i) << freqID_(i) << endl; |
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[326] | 520 | } |
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| 521 | } |
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| 522 | |
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[349] | 523 | |
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